mRNA_M-pyrifera_M_contig119828.4080.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119828.4080.1
Unique NamemRNA_M-pyrifera_M_contig119828.4080.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: UPI000A2C03B6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI000A2C03B6)

HSP 1 Score: 91.3 bits (225), Expect = 8.100e-22
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   43 NLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAAR---DFDASQVPPEWY 231
            N GVWGSL+++ + + +K GTLVGVD+ GNKYYENK Y Y R+RWVDY      D+D SQVPPEW+
Sbjct:   20 NGGVWGSLQKLYRTDELKMGTLVGVDKFGNKYYENKMYFYSRNRWVDYTEAVNLDYDGSQVPPEWH 85          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: UPI0006255959 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006255959)

HSP 1 Score: 88.6 bits (218), Expect = 9.060e-21
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   43 NLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAAR---DFDASQVPPEWYG 234
            N G+ GSLK + + + +K GTL+G+D+ GNKYYEN  Y YGR+RWV YA     D+DASQVPPEW+G
Sbjct:   20 NGGLLGSLKTLYREDDLKVGTLIGIDKYGNKYYENNYYFYGRNRWVSYAKEVGLDYDASQVPPEWFG 86          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: A0A6M2DG58_9NEOP (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Xenopsylla cheopis TaxID=163159 RepID=A0A6M2DG58_9NEOP)

HSP 1 Score: 87.0 bits (214), Expect = 3.940e-20
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 MAVKKVGQYLAEVR-NLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAAR---DFDASQVPPEWYG 234
            +A+ KV ++   +  + G+ GSLK++ + + +K G L+G D+ GNKYYENKEY YGR RWVDYA     ++DASQV PEW+G
Sbjct:    5 LALDKVAKFFRIIHAHGGIRGSLKRLLRTDDLKIGALIGEDKYGNKYYENKEYFYGRSRWVDYAPHVGLNYDASQVCPEWFG 86          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: A0A397TSQ9_9GLOM (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TSQ9_9GLOM)

HSP 1 Score: 85.9 bits (211), Expect = 1.440e-19
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   37 VRNLGVWGSLKQIRQMNLI---KPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAARDFDASQVPPEWY 231
            ++N  + G  + +RQ+  I   K GTLVG+D+ GNKYYENKE  YGRDRWVDYA    DASQ+PPEW+
Sbjct:   26 IKNFLIIGPREYLRQLLYISDTKAGTLVGIDQFGNKYYENKEEFYGRDRWVDYAQHYGDASQIPPEWH 93          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: UPI000E6E1F9A (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E1F9A)

HSP 1 Score: 85.5 bits (210), Expect = 1.590e-19
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   43 NLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAAR---DFDASQVPPEWYG 234
            N G+ GSL ++ + + +K GTLVG D+ GNKYYEN EY YGR+RWVDYA     ++DASQV PEW+G
Sbjct:   20 NGGIRGSLAKLARTDDLKLGTLVGEDKYGNKYYENNEYFYGRNRWVDYAPHVGLNYDASQVCPEWFG 86          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: A0A8K0KIY2_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KIY2_LADFU)

HSP 1 Score: 85.5 bits (210), Expect = 1.630e-19
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 MAVKKVGQYLAEV-RNLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYA---ARDFDASQVPPEWYG 234
            + + K+G+    +  N G+  SL ++ + + +K GTLVG D+ GNKYYENK Y YGR+RWV+YA   A D+D SQVP EWYG
Sbjct:    7 LGLDKLGRLFQIISHNGGIRASLYKLYRQDELKIGTLVGEDKFGNKYYENKMYFYGRNRWVEYADHIAMDYDGSQVPAEWYG 88          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: UPI0002657A0E (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002657A0E)

HSP 1 Score: 85.1 bits (209), Expect = 1.980e-19
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 MAVKKVGQYLAEVRNLGVW-GSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAAR---DFDASQVPPEWYG 234
            M + KV + L  ++  G W  SL ++ + + +K G LVG D  GN+YYENKEY  GRDRWV+YA +   D+D SQ+P EWYG
Sbjct:    1 MIIDKVHKTLRVIQENGGWLNSLLKLYRYDTLKSGRLVGTDDYGNRYYENKEYFMGRDRWVEYADKVRLDYDGSQIPAEWYG 82          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: A0A1B6FMS2_9HEMI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=3 Tax=Proconiini TaxID=565685 RepID=A0A1B6FMS2_9HEMI)

HSP 1 Score: 84.7 bits (208), Expect = 3.610e-19
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 MAVKKVGQYLAEVR-NLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAAR---DFDASQVPPEWYG 234
            +A+ K+G   + ++ N G+ GS  ++ +M  +K GTLVGVD+ GNKY+EN  Y YGR+RWV+YA     D+D SQVP EW+G
Sbjct:    7 LALDKLGTLFSIIKHNGGIVGSAVKLFRMEELKIGTLVGVDKYGNKYFENNYYFYGRNRWVEYADEVWLDYDGSQVPAEWFG 88          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: UPI001C9B7433 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B7433)

HSP 1 Score: 84.3 bits (207), Expect = 4.400e-19
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 MAVKKVGQYLAEVR-NLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYAAR---DFDASQVPPEWYG 234
            + + KV Q    +R N G++ SL+ I + + +K GTLVG D+ GNKYYEN EY YGR+RWV Y+ +   D+D SQV PEW+G
Sbjct:    5 LGLDKVAQLFRIIRANGGIFKSLRNIYRHDELKIGTLVGEDKFGNKYYENNEYFYGRNRWVIYSDQFGMDYDGSQVTPEWFG 86          
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Match: A0A6P7FCC9_DIAVI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FCC9_DIAVI)

HSP 1 Score: 84.3 bits (207), Expect = 4.510e-19
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   49 GVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENKEYLYGRDRWVDYA---ARDFDASQVPPEWYG 234
            G+  SL ++ +M+ ++PGTLVG D+ GNKYYEN  Y YGR+RW++YA     D+D SQVP EW+G
Sbjct:   22 GIRASLYKLYRMDNLRPGTLVGTDKYGNKYYENPHYFYGRNRWIEYAPYYGLDYDGSQVPAEWFG 86          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119828.4080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2C03B68.100e-2260.61NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI00062559599.060e-2158.21probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
A0A6M2DG58_9NEOP3.940e-2050.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A397TSQ9_9GLOM1.440e-1957.35NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI000E6E1F9A1.590e-1958.21NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A8K0KIY2_LADFU1.630e-1950.00Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI0002657A0E1.980e-1948.78probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
A0A1B6FMS2_9HEMI3.610e-1948.78NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
UPI001C9B74334.400e-1950.00probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
A0A6P7FCC9_DIAVI4.510e-1953.85NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119828contigM-pyrifera_M_contig119828:164..478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score84.7
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog136037.KDR12671
KEGG koko:K11352,ko:K18160
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050896,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone
EggNOG OGs3A5JT@33154,3BQTC@33208,3CXX0@33213,3SMI2@50557,41ZC0@6656,KOG3382@1,KOG3382@2759
COG Functional cat.C
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Exons2
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.7199252-CDS-M-pyrifera_M_contig119828:163..2971622815717.7199252-CDS-M-pyrifera_M_contig119828:163..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119828 164..297 +
1692277536.4463801-CDS-M-pyrifera_M_contig119828:163..2971692277536.4463801-CDS-M-pyrifera_M_contig119828:163..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119828 164..297 +
1622815717.7324746-CDS-M-pyrifera_M_contig119828:372..4781622815717.7324746-CDS-M-pyrifera_M_contig119828:372..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119828 373..478 +
1692277536.4577663-CDS-M-pyrifera_M_contig119828:372..4781692277536.4577663-CDS-M-pyrifera_M_contig119828:372..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119828 373..478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119828.4080.1prot_M-pyrifera_M_contig119828.4080.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119828 164..478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119828.4080.1

>prot_M-pyrifera_M_contig119828.4080.1 ID=prot_M-pyrifera_M_contig119828.4080.1|Name=mRNA_M-pyrifera_M_contig119828.4080.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MAVKKVGQYLAEVRNLGVWGSLKQIRQMNLIKPGTLVGVDRVGNKYYENK
EYLYGRDRWVDYAARDFDASQVPPEWYGVW
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mRNA from alignment at M-pyrifera_M_contig119828:164..478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119828.4080.1 ID=mRNA_M-pyrifera_M_contig119828.4080.1|Name=mRNA_M-pyrifera_M_contig119828.4080.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig119828:164..478+ (Macrocystis pyrifera P11B4 male)
ATGGCTGTGAAGAAAGTAGGACAGTATTTGGCGGAGGTCAGGAACCTGGG GGTGTGGGGCTCGCTCAAGCAGATCCGCCAGATGAACCTCATCAAGCCGG GCACCCTGGTCGGCGTTGACCGCGTTGGCAACAAGTGCGCACTCCCACCC TGCTTCTGCGCCGCTGGCGTGGCGGGGGATCGGATGCAGGCCAGTGCTGA CGTGTGCAGGTACTACGAAAACAAGGAGTACCTCTACGGCCGCGACAGGT GGGTGGACTACGCCGCGCGCGACTTCGACGCCTCGCAGGTGCCCCCCGAG TGGTACGGCGTCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119828:164..478+

>mRNA_M-pyrifera_M_contig119828.4080.1 ID=mRNA_M-pyrifera_M_contig119828.4080.1|Name=mRNA_M-pyrifera_M_contig119828.4080.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig119828:164..478+ (Macrocystis pyrifera P11B4 male)
ATGGCTGTGAAGAAAGTAGGACAGTATTTGGCGGAGGTCAGGAACCTGGG
GGTGTGGGGCTCGCTCAAGCAGATCCGCCAGATGAACCTCATCAAGCCGG
GCACCCTGGTCGGCGTTGACCGCGTTGGCAACAAATGGCTGTGAAGAAAG
TAGGACAGTATTTGGCGGAGGTCAGGAACCTGGGGGTGTGGGGCTCGCTC
AAGCAGATCCGCCAGATGAACCTCATCAAGCCGGGCACCCTGGTCGGCGT
TGACCGCGTTGGCAACAAGTACTACGAAAACAAGGAGTACCTCTACGGCC
GCGACAGGTGGGTGGACTACGCCGCGCGCGACTTCGACGCCTCGCAGGTG
CCCCCCGAGTGGTACGGCGTCTGGGTACTACGAAAACAAGGAGTACCTCT
ACGGCCGCGACAGGTGGGTGGACTACGCCGCGCGCGACTTCGACGCCTCG
CAGGTGCCCCCCGAGTGGTACGGCGTCTGG
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