mRNA_M-pyrifera_M_contig119809.4074.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119809.4074.1
Unique NamemRNA_M-pyrifera_M_contig119809.4074.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A3S1BS29_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BS29_ELYCH)

HSP 1 Score: 126 bits (316), Expect = 9.940e-34
Identity = 58/98 (59.18%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    4 DRLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAEDAGKGNLKSAL 297
            +RL+R++++AP +L MKGDP+ PRCGFS ++ Q+L  +GV +S+FDIL DD+VRQG+K FS++PT+PQLY NGEL GGLDIV+E  E    G LK AL
Sbjct:   70 ERLKRLINSAPVMLFMKGDPATPRCGFSRQITQILNEQGVKYSTFDILKDDDVRQGLKAFSNWPTYPQLYSNGELLGGLDIVKEMVES---GELKEAL 164          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A7S2AWV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWV1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.100e-33
Identity = 60/99 (60.61%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    7 RLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAEDAGKGNLKSALGL 303
            RL +++SAAP +L MKG PS PRCGFS   V+LL S G+ F SFDIL DD+VRQG+K FS++PT+PQLYV GEL GGLDI++E  E+  +G+L   LGL
Sbjct:  136 RLVKLISAAPTMLFMKGSPSEPRCGFSRTFVELLSSNGIEFGSFDILQDDDVRQGLKVFSNWPTYPQLYVKGELVGGLDILKEMLEE--EGSLAEQLGL 232          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A7S2IT19_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IT19_9DINO)

HSP 1 Score: 120 bits (302), Expect = 2.760e-33
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 EDRLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAEDAGKGNLKSALGL 303
            EDRL+ ++S AP  L MKG P  PRCGFS ++V +LQ   V F  FDIL+DDEVRQG+K +S++PT+PQLY  G+L GGLDIV+E AE+   G+L   LGL
Sbjct:   26 EDRLKGLISKAPVTLFMKGSPEQPRCGFSGKIVGILQENNVDFGHFDILSDDEVRQGLKTYSNWPTYPQLYAGGKLVGGLDIVKELAEE---GSLMEELGL 123          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A0L0P7U9_CANAR (Thioredoxin domain-containing protein n=3 Tax=Candida auris TaxID=498019 RepID=A0A0L0P7U9_CANAR)

HSP 1 Score: 124 bits (311), Expect = 2.910e-33
Identity = 57/89 (64.04%), Postives = 70/89 (78.65%), Query Frame = 1
Query:    1 EDRLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAED 267
            E+RL+++ SAAP +L MKG PS P+CGFS +MV +L+   V F  FDIL DD VRQG+K FSD+PTFPQLYVNGE QGGLDI++E  ED
Sbjct:  142 EERLKKLTSAAPVMLFMKGSPSSPQCGFSRQMVAILREHQVRFGFFDILKDDTVRQGLKTFSDWPTFPQLYVNGEFQGGLDIIKESLED 230          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A674GID8_TAEGU (Thioredoxin domain-containing protein n=2 Tax=Taeniopygia guttata TaxID=59729 RepID=A0A674GID8_TAEGU)

HSP 1 Score: 123 bits (309), Expect = 3.510e-33
Identity = 56/86 (65.12%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    7 RLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAE 264
            RL R+V+AAP +L MKG P  PRCGFS +MVQLLQ  GV+FS+FD+ +D+EVRQG+K FS++PT+PQLYV GEL GGLD+V+E  E
Sbjct:  124 RLSRLVNAAPCMLFMKGSPKEPRCGFSRQMVQLLQQHGVAFSTFDVFSDEEVRQGLKAFSNWPTYPQLYVRGELVGGLDVVKELKE 209          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A4D9CZQ9_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZQ9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.770e-33
Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    7 RLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAEDAGKGNLKSALGL 303
            RL+ +++ AP VL MKG  S PRCGFS  MV+LL++E ++F+SFDIL D+EVRQG+K++SD+ T+PQLYVNGEL GGLDIV+E   +   G LK ALG+
Sbjct:  152 RLKALITQAPVVLFMKGSSSNPRCGFSRSMVELLKTEKIAFASFDILQDEEVRQGLKEYSDWNTYPQLYVNGELVGGLDIVKEMVVEGASGRLKEALGI 250          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A7S3L5Z3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5Z3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.990e-33
Identity = 60/99 (60.61%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 EDRLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAEDAGKGNLKSAL 297
            EDRL+ +++    +L MKG PS PRCGFS +MVQLL+ EG+S+ SFDILTD+ VR+G+K +SD+PT+PQLYVNGEL GGLDIV+E  +++G  +LK AL
Sbjct:  245 EDRLKALINQNRVMLFMKGLPSGPRCGFSRQMVQLLEDEGISYGSFDILTDNAVREGLKTYSDWPTYPQLYVNGELIGGLDIVKEMKDESG--SLKEAL 341          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: UPI000359C985 (glutaredoxin-3 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359C985)

HSP 1 Score: 125 bits (314), Expect = 7.650e-33
Identity = 54/87 (62.07%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    4 DRLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAE 264
            +RL+R++++AP +L MKGDP+ PRCGFS +M+Q+L  + V +S+FDIL DD+VRQG+K FS++PTFPQLYV GEL GGLDIV+E  E
Sbjct:  133 ERLKRLINSAPVILFMKGDPNTPRCGFSRQMIQILNEQNVKYSTFDILEDDDVRQGLKAFSNWPTFPQLYVKGELMGGLDIVKEMVE 219          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: C4Y9F1_CLAL4 (Thioredoxin domain-containing protein n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4Y9F1_CLAL4)

HSP 1 Score: 122 bits (307), Expect = 1.080e-32
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    4 DRLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAED 267
            +RLQ++ SAAP +L MKG PS P+CGFS ++V +L+   V F  FDIL DD VRQG+K FSD+PTFPQLY+NGE QGGLDI++E  ED
Sbjct:  140 ERLQKLTSAAPVMLFMKGSPSAPQCGFSRQLVAILREHQVRFGFFDILKDDSVRQGLKTFSDWPTFPQLYINGEFQGGLDIIKESLED 227          
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Match: A0A1Z5JJC6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJC6_FISSO)

HSP 1 Score: 125 bits (313), Expect = 1.120e-32
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 1
Query:    1 EDRLQRMVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQGMKKFSDFPTFPQLYVNGELQGGLDIVQEEAEDAGKGNLKSALGL 303
            ++RL  +V     +L MKG PS PRCGFS ++VQLL  E +S+ SFDIL DD+VR+G+KKFSD+PT+PQLYV+GEL GGLDIV E  E++G G+LK ALG+
Sbjct:  234 QERLAALVKRHRVMLFMKGLPSAPRCGFSRQIVQLLDEEHISYDSFDILQDDQVREGLKKFSDWPTYPQLYVDGELVGGLDIVTELKEESG-GSLKEALGI 333          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119809.4074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S1BS29_ELYCH9.940e-3459.18Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A7S2AWV1_9STRA2.100e-3360.61Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2IT19_9DINO2.760e-3357.43Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A0L0P7U9_CANAR2.910e-3364.04Thioredoxin domain-containing protein n=3 Tax=Cand... [more]
A0A674GID8_TAEGU3.510e-3365.12Thioredoxin domain-containing protein n=2 Tax=Taen... [more]
A0A4D9CZQ9_9STRA3.770e-3359.60Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
A0A7S3L5Z3_9STRA6.990e-3360.61Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
UPI000359C9857.650e-3362.07glutaredoxin-3 n=1 Tax=Aplysia californica TaxID=6... [more]
C4Y9F1_CLAL41.080e-3262.50Thioredoxin domain-containing protein n=2 Tax=Clav... [more]
A0A1Z5JJC6_FISSO1.120e-3260.40Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119809contigM-pyrifera_M_contig119809:1..306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score118.2
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog6500.XP_005097386.1
Preferred nameGLRX3
KEGG koko:K15216
Hectar predicted targeting categoryother localisation
GOsGO:0002026,GO:0003674,GO:0005080,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006790,GO:0006807,GO:0008016,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010611,GO:0010614,GO:0014741,GO:0014743,GO:0016043,GO:0016226,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0020027,GO:0022607,GO:0030016,GO:0030017,GO:0030018,GO:0030425,GO:0031163,GO:0031674,GO:0036477,GO:0042592,GO:0042802,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043502,GO:0044057,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044463,GO:0044464,GO:0044571,GO:0048519,GO:0048583,GO:0048878,GO:0050789,GO:0050801,GO:0051186,GO:0051239,GO:0051241,GO:0051604,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0090257,GO:0097428,GO:0097447,GO:0097458,GO:0098771,GO:0099080,GO:0099081,GO:0099512,GO:0120025,GO:0120038,GO:1901564,GO:1903522
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGs38BF9@33154,3BC2Q@33208,3CSGU@33213,COG0278@1,KOG0911@2759
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size306
Cds size288
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.338551-UTR-M-pyrifera_M_contig119809:0..181622815717.338551-UTR-M-pyrifera_M_contig119809:0..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119809 1..18 +
1692277536.2463582-UTR-M-pyrifera_M_contig119809:0..181692277536.2463582-UTR-M-pyrifera_M_contig119809:0..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119809 1..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.3512788-CDS-M-pyrifera_M_contig119809:18..3061622815717.3512788-CDS-M-pyrifera_M_contig119809:18..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119809 19..306 +
1692277536.2585466-CDS-M-pyrifera_M_contig119809:18..3061692277536.2585466-CDS-M-pyrifera_M_contig119809:18..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119809 19..306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119809.4074.1prot_M-pyrifera_M_contig119809.4074.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119809 19..306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119809.4074.1

>prot_M-pyrifera_M_contig119809.4074.1 ID=prot_M-pyrifera_M_contig119809.4074.1|Name=mRNA_M-pyrifera_M_contig119809.4074.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MVSAAPAVLLMKGDPSWPRCGFSIRMVQLLQSEGVSFSSFDILTDDEVRQ
GMKKFSDFPTFPQLYVNGELQGGLDIVQEEAEDAGKGNLKSALGL*
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mRNA from alignment at M-pyrifera_M_contig119809:1..306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119809.4074.1 ID=mRNA_M-pyrifera_M_contig119809.4074.1|Name=mRNA_M-pyrifera_M_contig119809.4074.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig119809:1..306+ (Macrocystis pyrifera P11B4 male)
GAGGACAGGCTGCAGCGCATGGTGTCTGCTGCGCCTGCGGTGCTGTTGAT GAAGGGAGATCCGTCTTGGCCCCGGTGTGGTTTCAGCATCCGCATGGTAC AGCTGCTGCAGAGCGAGGGTGTGAGCTTCTCCTCGTTCGACATCCTGACG GACGACGAGGTGCGGCAGGGGATGAAGAAGTTTTCCGACTTCCCCACCTT CCCGCAGCTCTACGTGAACGGCGAGCTGCAGGGCGGGCTGGACATTGTGC AGGAGGAGGCGGAGGACGCAGGAAAGGGCAACCTGAAGTCGGCGCTGGGG CTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119809:1..306+

>mRNA_M-pyrifera_M_contig119809.4074.1 ID=mRNA_M-pyrifera_M_contig119809.4074.1|Name=mRNA_M-pyrifera_M_contig119809.4074.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig119809:1..306+ (Macrocystis pyrifera P11B4 male)
ATGGTGTCTGCTGCGCCTGCGGTGCTGTTGATGAAGGGAGATCCGTCTTG
GCCCCGGTGTGGTTTCAGCATCCGCATGGTACAGCTGCTGCAGAGCGAGG
GTGTGAGCTTCTCCTCGTTCGACATCCTGACGGACGACGAGGTGCGGCAG
GGGATGAAGAAGTTTTCCGACTTCCCCACCTTCCCGCAGCTCTACGTGAA
CGGCGAGCTGCAGGGCGGGCTGGACATTGTGCAGGAGGAGGCGGAGGACG
CAGGAAAGGGCAACCTGAAGTCGGCGCTGGGGCTGTGAATGGTGTCTGCT
GCGCCTGCGGTGCTGTTGATGAAGGGAGATCCGTCTTGGCCCCGGTGTGG
TTTCAGCATCCGCATGGTACAGCTGCTGCAGAGCGAGGGTGTGAGCTTCT
CCTCGTTCGACATCCTGACGGACGACGAGGTGCGGCAGGGGATGAAGAAG
TTTTCCGACTTCCCCACCTTCCCGCAGCTCTACGTGAACGGCGAGCTGCA
GGGCGGGCTGGACATTGTGCAGGAGGAGGCGGAGGACGCAGGAAAGGGCA
ACCTGAAGTCGGCGCTGGGGCTGTGA
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