mRNA_M-pyrifera_M_contig119807.4072.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119807.4072.1
Unique NamemRNA_M-pyrifera_M_contig119807.4072.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119807.4072.1 vs. uniprot
Match: L8GGF5_ACACA (TBC domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GGF5_ACACA)

HSP 1 Score: 65.1 bits (157), Expect = 3.860e-10
Identity = 28/91 (30.77%), Postives = 46/91 (50.55%), Query Frame = 1 
Query:   13 GIPDSRRAEIWKLILAVEEYQEAHPGRFEIDRRQIFGEVLPDSHFVTPLFGGNIHADNPCLLVGGKLVLQRLLCMVASTMATVDYCPALPE 285
            G+PDS+RA++W+  +   E++ A+P  +     ++FG  LP   +  P FGG +      L   G     RLL  +      +DY PA+P+
Sbjct:  284 GVPDSKRAQVWRTAVGCVEFERAYPNYYADVLERVFGNRLPTRFYQVPAFGGELRPGEHYLTTHGLTAAARLLWALTMEYPDIDYVPAIPD 374
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119807.4072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
L8GGF5_ACACA3.860e-1030.77TBC domain containing protein n=1 Tax=Acanthamoeba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119807contigM-pyrifera_M_contig119807:1..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.2592337-CDS-M-pyrifera_M_contig119807:0..3001622815717.2592337-CDS-M-pyrifera_M_contig119807:0..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119807 1..300 -
1692277536.2201457-CDS-M-pyrifera_M_contig119807:0..3001692277536.2201457-CDS-M-pyrifera_M_contig119807:0..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119807 1..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119807.4072.1prot_M-pyrifera_M_contig119807.4072.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119807 1..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119807.4072.1

>prot_M-pyrifera_M_contig119807.4072.1 ID=prot_M-pyrifera_M_contig119807.4072.1|Name=mRNA_M-pyrifera_M_contig119807.4072.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
LTTSGIPDSRRAEIWKLILAVEEYQEAHPGRFEIDRRQIFGEVLPDSHFV
TPLFGGNIHADNPCLLVGGKLVLQRLLCMVASTMATVDYCPALPEFRTLI
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mRNA from alignment at M-pyrifera_M_contig119807:1..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119807.4072.1 ID=mRNA_M-pyrifera_M_contig119807.4072.1|Name=mRNA_M-pyrifera_M_contig119807.4072.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig119807:1..300- (Macrocystis pyrifera P11B4 male)
CTAACGACATCAGGCATCCCAGACTCACGACGGGCGGAGATCTGGAAGCT
GATCCTGGCGGTGGAGGAGTACCAGGAGGCGCACCCCGGCCGCTTCGAGA
TCGACCGCAGGCAGATCTTTGGCGAGGTTCTGCCCGACTCCCACTTCGTT
ACGCCGCTCTTCGGCGGCAACATTCACGCCGACAACCCCTGCCTACTGGT
GGGAGGGAAGCTGGTGCTGCAGCGCCTCCTCTGCATGGTCGCCTCCACCA
TGGCCACCGTCGACTACTGCCCCGCTCTCCCTGAGTTTCGTACGCTAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119807:1..300-

>mRNA_M-pyrifera_M_contig119807.4072.1 ID=mRNA_M-pyrifera_M_contig119807.4072.1|Name=mRNA_M-pyrifera_M_contig119807.4072.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig119807:1..300- (Macrocystis pyrifera P11B4 male)
CTAACGACATCAGGCATCCCAGACTCACGACGGGCGGAGATCTGGAAGCT
GATCCTGGCGGTGGAGGAGTACCAGGAGGCGCACCCCGGCCGCTTCGAGA
TCGACCGCAGGCAGATCTTTGGCGAGGTTCTGCCCGACTCCCACTTCGTT
ACGCCGCTCTTCGGCGGCAACATTCACGCCGACAACCCCTGCCTACTGGT
GGGAGGGAAGCTGGTGCTGCAGCGCCTCCTCTGCATGGTCGCCTCCACCA
TGGCCACCGTCGACTACTGCCCCGCTCTCCCTGAGTTTCGTACGCTAATC
CTAACGACATCAGGCATCCCAGACTCACGACGGGCGGAGATCTGGAAGCT
GATCCTGGCGGTGGAGGAGTACCAGGAGGCGCACCCCGGCCGCTTCGAGA
TCGACCGCAGGCAGATCTTTGGCGAGGTTCTGCCCGACTCCCACTTCGTT
ACGCCGCTCTTCGGCGGCAACATTCACGCCGACAACCCCTGCCTACTGGT
GGGAGGGAAGCTGGTGCTGCAGCGCCTCCTCTGCATGGTCGCCTCCACCA
TGGCCACCGTCGACTACTGCCCCGCTCTCCCTGAGTTTCGTACGCTAATC
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