mRNA_M-pyrifera_M_contig1198.4070.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1198.4070.1
Unique NamemRNA_M-pyrifera_M_contig1198.4070.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1198.4070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1198contigM-pyrifera_M_contig1198:19104..20336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size951
Cds size951
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1198.4070.1prot_M-pyrifera_M_contig1198.4070.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1198 19104..20336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.1478534-CDS-M-pyrifera_M_contig1198:19103..192321622815717.1478534-CDS-M-pyrifera_M_contig1198:19103..19232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 19104..19232 -
1692277536.1766078-CDS-M-pyrifera_M_contig1198:19103..192321692277536.1766078-CDS-M-pyrifera_M_contig1198:19103..19232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 19104..19232 -
1622815717.1595905-CDS-M-pyrifera_M_contig1198:19351..198541622815717.1595905-CDS-M-pyrifera_M_contig1198:19351..19854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 19352..19854 -
1692277536.1852987-CDS-M-pyrifera_M_contig1198:19351..198541692277536.1852987-CDS-M-pyrifera_M_contig1198:19351..19854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 19352..19854 -
1622815717.1699936-CDS-M-pyrifera_M_contig1198:19996..201911622815717.1699936-CDS-M-pyrifera_M_contig1198:19996..20191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 19997..20191 -
1692277536.193259-CDS-M-pyrifera_M_contig1198:19996..201911692277536.193259-CDS-M-pyrifera_M_contig1198:19996..20191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 19997..20191 -
1622815717.1840682-CDS-M-pyrifera_M_contig1198:20212..203361622815717.1840682-CDS-M-pyrifera_M_contig1198:20212..20336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 20213..20336 -
1692277536.2011049-CDS-M-pyrifera_M_contig1198:20212..203361692277536.2011049-CDS-M-pyrifera_M_contig1198:20212..20336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1198 20213..20336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1198.4070.1

>prot_M-pyrifera_M_contig1198.4070.1 ID=prot_M-pyrifera_M_contig1198.4070.1|Name=mRNA_M-pyrifera_M_contig1198.4070.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=317bp
AAAAGGSLHIFQWAHANDCPRDGDTRSEAASSGHLDILEWAHSKTCVKAA
GGCYLAMIQWVRAHGCPWDGNPCSEAARAGGLDILQWARSENCPWDFRKC
SKAAEGGHLEVLQWARAQGCPWHSKAGVGTLRNGHLGTLEWMMMHGRYLS
PTSANHVAARNGHVRILELIRVSHPVWNNHDIFRAAAMGGHLGVLQWARA
KGCPWDGRTCGEAASRGQLEALKWARRNGCPWDEHTCSRAIAAGRLDILQ
WARERGFPWSGDTCTVADRKGNFQWARSQGCRWTYATYEAVKRHSHVKQW
TMLNGCPPKPTEEDVF*
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mRNA from alignment at M-pyrifera_M_contig1198:19104..20336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1198.4070.1 ID=mRNA_M-pyrifera_M_contig1198.4070.1|Name=mRNA_M-pyrifera_M_contig1198.4070.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1233bp|location=Sequence derived from alignment at M-pyrifera_M_contig1198:19104..20336- (Macrocystis pyrifera P11B4 male)
GCGGCTGCGGCTGGAGGTAGTCTGCACATTTTTCAATGGGCGCACGCTAA
CGACTGCCCCCGGGACGGAGATACTCGCAGCGAGGCGGCCAGTTCAGGCC
ATCTGGATATCCTTGAGTGGGCACGTTTGGAAAATTGCCCTTGAGATAGC
AAAACGTGCGTGAAGGCTGCTGGGGGATGTTATCTCGCCATGATTCAGTG
GGTCCGAGCTCATGGTTGCCCCTGGGATGGCAATCCTTGCAGCGAGGCCG
CCAGAGCCGGGGGTCTCGACATCCTACAGTGGGCACGTTCTGAAAACTGT
CCTTGGGACTTTCGAAAGTGCTCGAAGGCTGCTGAGGGCGGTCACCTCCG
CATCCTTCAGCGGGCTCGAGCTCACGGTTATGCTCGGAGCTGCTGAGGGC
GGTCACCTCGGCATCCTTGAGTGGGCCCGAGCTCACGGTTGTGCTTGAGA
CCATGCAACGTGCTCGGGTGCCGCCACCAGAGGGCACCTAGAGGTGCTTC
AGTGGGCGAGGGCGCAAGGGTGCCCATGGCACTCGAAGGCCGGCGTAGGT
ACCCTTCGAAACGGGCACCTAGGTACGCTGGAGTGGATGATGATGCACGG
CAGGTACCTCTCGCCCACGAGCGCCAACCACGTCGCGGCTCGTAACGGGC
ACGTCCGCATCCTGGAATTAATACGGGTTAGCCATCCCGTCTGGAACAAC
CATGATATATTCAGGGCGGCTGCCATGGGAGGGCATCTGGGCGTGCTCCA
ATGGGCCCGAGCTAAGGGGTGCCCATGGGACGGTAGAACATGTGGCGAGG
CAGCATCGAGAGGTCAACTCGAGGCGTTAAAATGGGCCCGACGCAACGGT
TGCCCCTGGGATGAACACACCTGCAGCCGCGCAATCGCGGCAGGGCGCCT
GGACATACTGCAGTGGGCGCGGGAACGAGGCTTCCCGTGGAGTGGTGACA
CGTGTACCGTAGCAGACAGGAAGGGTAACTTCCAGGTGCTGAGATGCGCG
CGGGGCAACGGCTGCCCTTGGGGCAACGGCTCATTCTGTGGTGATGGCAC
GGGCACGGATGCAGCCGCGACAGGGTGACTGCAATACATATATATATAAT
GCAGTGGGCGCGCTCACAAGGCTGCCGATGGACATACGCGACATATGAGG
CGGTTAAACGGCACAGCCATGTGAAGCAGTGGACAATGCTTAATGGCTGT
CCGCCAAAACCGACGGAGGAGGATGTATTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1198:19104..20336-

>mRNA_M-pyrifera_M_contig1198.4070.1 ID=mRNA_M-pyrifera_M_contig1198.4070.1|Name=mRNA_M-pyrifera_M_contig1198.4070.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1902bp|location=Sequence derived from alignment at M-pyrifera_M_contig1198:19104..20336- (Macrocystis pyrifera P11B4 male)
GCGGCTGCGGCTGGAGGTAGTCTGCACATTTTTCAATGGGCGCACGCTAA
CGACTGCCCCCGGGACGGAGATACTCGCAGCGAGGCGGCCAGTTCAGGCC
ATCTGGATATCCTTGAGTGGGCACGCGGCTGCGGCTGGAGGTAGTCTGCA
CATTTTTCAATGGGCGCACGCTAACGACTGCCCCCGGGACGGAGATACTC
GCAGCGAGGCGGCCAGTTCAGGCCATCTGGATATCCTTGAGTGGGCACAT
AGCAAAACGTGCGTGAAGGCTGCTGGGGGATGTTATCTCGCCATGATTCA
GTGGGTCCGAGCTCATGGTTGCCCCTGGGATGGCAATCCTTGCAGCGAGG
CCGCCAGAGCCGGGGGTCTCGACATCCTACAGTGGGCACGTTCTGAAAAC
TGTCCTTGGGACTTTCGAAAGTGCTCGAAGGCTGCTGAGGGCGATAGCAA
AACGTGCGTGAAGGCTGCTGGGGGATGTTATCTCGCCATGATTCAGTGGG
TCCGAGCTCATGGTTGCCCCTGGGATGGCAATCCTTGCAGCGAGGCCGCC
AGAGCCGGGGGTCTCGACATCCTACAGTGGGCACGTTCTGAAAACTGTCC
TTGGGACTTTCGAAAGTGCTCGAAGGCTGCTGAGGGCGGGCACCTAGAGG
TGCTTCAGTGGGCGAGGGCGCAAGGGTGCCCATGGCACTCGAAGGCCGGC
GTAGGTACCCTTCGAAACGGGCACCTAGGTACGCTGGAGTGGATGATGAT
GCACGGCAGGTACCTCTCGCCCACGAGCGCCAACCACGTCGCGGCTCGTA
ACGGGCACGTCCGCATCCTGGAATTAATACGGGTTAGCCATCCCGTCTGG
AACAACCATGATATATTCAGGGCGGCTGCCATGGGAGGGCATCTGGGCGT
GCTCCAATGGGCCCGAGCTAAGGGGTGCCCATGGGACGGTAGAACATGTG
GCGAGGCAGCATCGAGAGGTCAACTCGAGGCGTTAAAATGGGCCCGACGC
AACGGTTGCCCCTGGGATGAACACACCTGCAGCCGCGCAATCGCGGCAGG
GCGCCTGGACATACTGCAGTGGGCGCGGGAACGAGGCTTCCCGTGGAGTG
GTGACACGTGTACCGTAGCAGACAGGAAGGGTAACTTCCAGGGCACCTAG
AGGTGCTTCAGTGGGCGAGGGCGCAAGGGTGCCCATGGCACTCGAAGGCC
GGCGTAGGTACCCTTCGAAACGGGCACCTAGGTACGCTGGAGTGGATGAT
GATGCACGGCAGGTACCTCTCGCCCACGAGCGCCAACCACGTCGCGGCTC
GTAACGGGCACGTCCGCATCCTGGAATTAATACGGGTTAGCCATCCCGTC
TGGAACAACCATGATATATTCAGGGCGGCTGCCATGGGAGGGCATCTGGG
CGTGCTCCAATGGGCCCGAGCTAAGGGGTGCCCATGGGACGGTAGAACAT
GTGGCGAGGCAGCATCGAGAGGTCAACTCGAGGCGTTAAAATGGGCCCGA
CGCAACGGTTGCCCCTGGGATGAACACACCTGCAGCCGCGCAATCGCGGC
AGGGCGCCTGGACATACTGCAGTGGGCGCGGGAACGAGGCTTCCCGTGGA
GTGGTGACACGTGTACCGTAGCAGACAGGAAGGGTAACTTCCAGTGGGCG
CGCTCACAAGGCTGCCGATGGACATACGCGACATATGAGGCGGTTAAACG
GCACAGCCATGTGAAGCAGTGGACAATGCTTAATGGCTGTCCGCCAAAAC
CGACGGAGGAGGATGTATTTTGATGGGCGCGCTCACAAGGCTGCCGATGG
ACATACGCGACATATGAGGCGGTTAAACGGCACAGCCATGTGAAGCAGTG
GACAATGCTTAATGGCTGTCCGCCAAAACCGACGGAGGAGGATGTATTTT
GA
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