mRNA_M-pyrifera_M_contig11975.4064.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11975.4064.1
Unique NamemRNA_M-pyrifera_M_contig11975.4064.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: D7G351_ECTSI (G-patch domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G351_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 6.390e-43
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKLRPRVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAG 276
            VQI ESNKGFQLL  MGWKLDEGLG+RKQGRVNPL+TTF++  TGLGAG KLRPRVTHFPSHVPSQALNAPDGKSDAVRA E LD  R  G
Sbjct:  141 VQIHESNKGFQLLAGMGWKLDEGLGSRKQGRVNPLQTTFKRDTTGLGAGGKLRPRVTHFPSHVPSQALNAPDGKSDAVRAHERLDRGRLGG 231          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: W2XPJ9_PHYPR (G-patch domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2XPJ9_PHYPR)

HSP 1 Score: 90.1 bits (222), Expect = 2.920e-20
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKLRP-RVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFSD 375
            V + E+N+G+QLL+SMGW+ + GLG    G+V P+ TTF+  + G+G     +  R+THFPSH   QA  A DG+S+A R Q+ L  +R+        +S+ +RK ++  E+R++R    EL+SD
Sbjct:   38 VWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPSHDEQQARMAVDGRSEAQRMQDRLTRKRKQTQQHPVGLSKAQRKLQKQREQRRDRAIGNELYSD 162          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: A0A2P4YPZ3_9STRA (G patch domain containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPZ3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.550e-20
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKLRP-RVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFSD 375
            V + E+N+G+Q+L+SMGW+   GLG    G+V P+ TTF+  + G+G     +  RVTHFP+H   QA  A DG+S+A R Q+ L  +R+A    G  +S+ +RK ++  E+R++R    EL+SD
Sbjct:   38 VWLPETNRGYQMLKSMGWQETGGLGPSGDGKVTPIATTFKTDRAGVGIQTTTKQTRVTHFPAHDEQQARMAADGRSEAQRMQDRLARKRKASQQVG--LSKAQRKLQKHREQRRDRAIGNELYSD 160          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: A0A662WGJ1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGJ1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.980e-19
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGA-GDKLRPRVTHFPSHVPSQALNAPDGKSDAVRAQESL 255
            V + E+N+GFQ+L+SMGW+ D GLG    GRV P+ TT +  + G+GA     + RVTHFP+H   QAL APDG+SDA R QE L
Sbjct: 3183 VWLPETNRGFQMLQSMGWRQDTGLGPAGDGRVTPVATTLKTDRAGIGAQATAKQTRVTHFPAHDEQQALAAPDGRSDAQRMQERL 3267          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: A0A6A3FNH0_9STRA (G-patch domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FNH0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.310e-19
Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKLRP-RVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFSD 375
            V + E+N+G+Q+L+SMGW+   GLG    G+V P+ TTF+  + G+G     +  RVTHFP+H   QA  A DG+S+A R Q+ L  +R+        +S+ +RK ++  E+R++R    EL+S+
Sbjct:   38 VWLPETNRGYQMLKSMGWRESGGLGPTGDGKVTPIATTFKTDRAGVGVQPTAKQTRVTHFPAHDEQQARLAADGRSEAQRIQDRLARKRKQAQQHPAGLSKVQRKLQKQMEQRRDRAIGNELYSE 162          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: A0A0W8DK07_PHYNI (G patch domain and ankyrin repeat-containing protein 1 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DK07_PHYNI)

HSP 1 Score: 89.0 bits (219), Expect = 4.000e-18
Identity = 49/125 (39.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKLRP-RVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFSD 375
            V + E+N+G+QLL+SMGW+ + GLG    G+V P+ TTF+  + G+G     +  R+THFP+H   QA  A DG+S+A R Q+ L  +R+        +S+ +RK ++  E+R++R    EL+SD
Sbjct:  487 VWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRLTRKRKQTQQHPVGLSKAQRKLQKQREQRRDRAIGNELYSD 611          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: D0NZX5_PHYIT (G-patch domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NZX5_PHYIT)

HSP 1 Score: 84.0 bits (206), Expect = 7.080e-18
Identity = 46/125 (36.80%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKLRP-RVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFSD 375
            V + E+N+G+Q+L+SMGW+ + GLG    G+V P+ T F+  + G+G     +  RVTHFP+H   QA  A DG+S+A R Q+ L  +R+        + + +RK ++  E+R++R    EL+S+
Sbjct:   38 VWLPETNRGYQMLKSMGWQENGGLGPTGDGKVTPIATIFKTDRAGVGVQSTAKQARVTHFPAHDEQQATMAADGRSEAQRTQDRLALKRKQAQQHPVGLPKAQRKLQKPNEQRRDRAIGNELYSE 162          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: A0A3F2RKQ8_9STRA (G-patch domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RKQ8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.850e-18
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKLR-PRVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFS 372
            V + ESN+G+Q+L +MGW+   GLG    G++ P+ T F+ G+ G+G     +  R+THFP H   QA  A DG+SDA R Q+ L  +R+        +S+ +RK ++  E++++R    EL+S
Sbjct:  124 VWLPESNRGYQMLRTMGWEETRGLGPTGDGKMTPIATIFKTGRAGIGVQSTAKHARITHFPRHDEEQAKMAADGRSDAQRMQDRLTRKRKQ-QHHPVMLSKAQRKVQKQVEQKRDRAIGNELYS 246          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: A0A8J5I8K8_9STRA (G-patch domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5I8K8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.370e-17
Identity = 48/125 (38.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAGDKL-RPRVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFSD 375
            V + E+N+G+Q+L+SMGW+ + GLGA   G+V P+ TTF+  + G+G      + RVTHFP+H   QA  A DG+S+A R Q+ L  +R+        +S+ +R  ++  E+R++R    EL+S+
Sbjct:  448 VWLPETNRGYQMLKSMGWQENGGLGATGDGKVTPIATTFKTDRAGVGVQSTADQARVTHFPAHDEQQARIAADGRSEAQRIQDRLARKRKQTQQHPVGLSKAQRMLQKQKEQRRDRAIGNELYSE 572          
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Match: H3H1A9_PHYRM (G-patch domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1A9_PHYRM)

HSP 1 Score: 84.3 bits (207), Expect = 1.660e-16
Identity = 48/125 (38.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    4 VQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGA-GDKLRPRVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMSRKERKAREDAEKRKERRTKLELFSD 375
            V + E+N+GFQ+L+SMGW+   GLG    GR+ P+ TTF+  + G+G      + RVTHFP H   QA  A DG+S+A R Q+ L  +R+  +     +S+ +RK ++  E+ ++R    EL+S+
Sbjct:  486 VWLPETNRGFQMLKSMGWQESGGLGPAGDGRMTPVATTFKTDRAGVGVQATGKQARVTHFPPHDEQQAAMAADGRSEAQRMQDRLARKRKPSAA----LSKAQRKLQKQREQTRDRAIGSELYSE 606          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11975.4064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G351_ECTSI6.390e-4382.42G-patch domain-containing protein n=2 Tax=Ectocarp... [more]
W2XPJ9_PHYPR2.920e-2040.00G-patch domain-containing protein n=1 Tax=Phytopht... [more]
A0A2P4YPZ3_9STRA5.550e-2040.80G patch domain containing protein n=1 Tax=Phytopht... [more]
A0A662WGJ1_9STRA1.980e-1952.94Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6A3FNH0_9STRA2.310e-1938.40G-patch domain-containing protein n=4 Tax=Phytopht... [more]
A0A0W8DK07_PHYNI4.000e-1839.20G patch domain and ankyrin repeat-containing prote... [more]
D0NZX5_PHYIT7.080e-1836.80G-patch domain-containing protein n=1 Tax=Phytopht... [more]
A0A3F2RKQ8_9STRA9.850e-1837.10G-patch domain-containing protein n=3 Tax=Phytopht... [more]
A0A8J5I8K8_9STRA1.370e-1738.40G-patch domain-containing protein n=1 Tax=Phytopht... [more]
H3H1A9_PHYRM1.660e-1638.40G-patch domain-containing protein n=1 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11975contigM-pyrifera_M_contig11975:1378..1962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D7G351
Preferred nameGPANK1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0097159,GO:1901363
EggNOG free text desc.glycine rich nucleic binding domain
EggNOG OGsKOG2384@1,KOG2384@2759
Ec32 ortholog descriptionG-patch domain
Ec32 orthologEc-24_002800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.859654-CDS-M-pyrifera_M_contig11975:1377..14841622815716.859654-CDS-M-pyrifera_M_contig11975:1377..1484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11975 1378..1484 -
1692277536.0753067-CDS-M-pyrifera_M_contig11975:1377..14841692277536.0753067-CDS-M-pyrifera_M_contig11975:1377..1484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11975 1378..1484 -
1622815716.8704429-CDS-M-pyrifera_M_contig11975:1694..19621622815716.8704429-CDS-M-pyrifera_M_contig11975:1694..1962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11975 1695..1962 -
1692277536.0867784-CDS-M-pyrifera_M_contig11975:1694..19621692277536.0867784-CDS-M-pyrifera_M_contig11975:1694..1962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11975 1695..1962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11975.4064.1prot_M-pyrifera_M_contig11975.4064.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11975 1378..1962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11975.4064.1

>prot_M-pyrifera_M_contig11975.4064.1 ID=prot_M-pyrifera_M_contig11975.4064.1|Name=mRNA_M-pyrifera_M_contig11975.4064.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
QVQIDESNKGFQLLESMGWKLDEGLGARKQGRVNPLRTTFRQGKTGLGAG
DKLRPRVTHFPSHVPSQALNAPDGKSDAVRAQESLDHRRRAGSGSGYFMS
RKERKAREDAEKRKERRTKLELFSD
back to top

mRNA from alignment at M-pyrifera_M_contig11975:1378..1962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11975.4064.1 ID=mRNA_M-pyrifera_M_contig11975.4064.1|Name=mRNA_M-pyrifera_M_contig11975.4064.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig11975:1378..1962- (Macrocystis pyrifera P11B4 male)
CAGGTGCAAATAGACGAGAGCAACAAAGGCTTCCAGTTGCTGGAATCGAT GGGCTGGAAGTTAGACGAAGGGCTCGGCGCTCGAAAGCAGGGCCGCGTCA ACCCCCTCCGGACCACGTTCAGGCAGGGAAAGACCGGCCTCGGGGCCGGC GACAAACTCCGCCCCCGCGTCACCCACTTCCCGTCCCACGTCCCGTCTCA GGCGCTGAACGCTCCCGATGGAAAGAGCGACGCTGTTAGAGCCCAGGAGA GCCTCGATCACCGGCGCCGTTGCGGCGCTCGAGGGTGGGGTGGTGGTGGT GGTGGTGGTGGCAGCGGTGGCGGTAGCAGTGGTGGTGGTGGTGGCGGCGG CGAAGCGCACGCCAGAGGTGACTTTTGCGGCCAGGGGGTACAGCGCCGCA GCCGTCGCTACCCCGAGGGACAGGGGCGTAGCACCGCGGCGGCTGCTGCT GCTGCTTCTAAAAAGCAGCAGCAGGCAGGGGCGGGGTCGGGATCGGGCTA CTTCATGAGTCGAAAGGAGCGAAAGGCCAGGGAAGACGCAGAAAAAAGGA AAGAGCGGAGGACGAAACTTGAGCTGTTTTCGGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11975:1378..1962-

>mRNA_M-pyrifera_M_contig11975.4064.1 ID=mRNA_M-pyrifera_M_contig11975.4064.1|Name=mRNA_M-pyrifera_M_contig11975.4064.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig11975:1378..1962- (Macrocystis pyrifera P11B4 male)
CAGGTGCAAATAGACGAGAGCAACAAAGGCTTCCAGTTGCTGGAATCGAT
GGGCTGGAAGTTAGACGAAGGGCTCGGCGCTCGAAAGCAGGGCCGCGTCA
ACCCCCTCCGGACCACGTTCAGGCAGGGAAAGACCGGCCTCGGGGCCGGC
GACAAACTCCGCCCCCGCGTCACCCACTTCCCGTCCCACGTCCCGTCTCA
GGCGCTGAACGCTCCCGATGGAAAGAGCGACGCTGTTAGAGCCCAGGAGA
GCCTCGATCACCGGCGCCCAGGTGCAAATAGACGAGAGCAACAAAGGCTT
CCAGTTGCTGGAATCGATGGGCTGGAAGTTAGACGAAGGGCTCGGCGCTC
GAAAGCAGGGCCGCGTCAACCCCCTCCGGACCACGTTCAGGCAGGGAAAG
ACCGGCCTCGGGGCCGGCGACAAACTCCGCCCCCGCGTCACCCACTTCCC
GTCCCACGTCCCGTCTCAGGCGCTGAACGCTCCCGATGGAAAGAGCGACG
CTGTTAGAGCCCAGGAGAGCCTCGATCACCGGCGCCGGGCGGGGTCGGGA
TCGGGCTACTTCATGAGTCGAAAGGAGCGAAAGGCCAGGGAAGACGCAGA
AAAAAGGAAAGAGCGGAGGACGAAACTTGAGCTGTTTTCGGACGGGCGGG
GTCGGGATCGGGCTACTTCATGAGTCGAAAGGAGCGAAAGGCCAGGGAAG
ACGCAGAAAAAAGGAAAGAGCGGAGGACGAAACTTGAGCTGTTTTCGGAC
back to top