mRNA_M-pyrifera_M_contig11973.4063.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11973.4063.1
Unique NamemRNA_M-pyrifera_M_contig11973.4063.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11973.4063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11973contigM-pyrifera_M_contig11973:2169..2616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001070.1
Exons2
Model size265
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.8102205-CDS-M-pyrifera_M_contig11973:2170..23141622815716.8102205-CDS-M-pyrifera_M_contig11973:2170..2314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11973 2171..2314 -
1692277536.049664-CDS-M-pyrifera_M_contig11973:2170..23141692277536.049664-CDS-M-pyrifera_M_contig11973:2170..2314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11973 2171..2314 -
1622815716.8241036-CDS-M-pyrifera_M_contig11973:2499..26161622815716.8241036-CDS-M-pyrifera_M_contig11973:2499..2616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11973 2500..2616 -
1692277536.0636518-CDS-M-pyrifera_M_contig11973:2499..26161692277536.0636518-CDS-M-pyrifera_M_contig11973:2499..2616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11973 2500..2616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11973.4063.1prot_M-pyrifera_M_contig11973.4063.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11973 2171..2616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11973.4063.1

>prot_M-pyrifera_M_contig11973.4063.1 ID=prot_M-pyrifera_M_contig11973.4063.1|Name=mRNA_M-pyrifera_M_contig11973.4063.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
STEASSGTLPQASHEYHGPEGVGVMSALEFLRQLGLIVEVRLQLLGVYRG
CFSAGHVHGVELRCDLSLYFAMQCRIWLSTRMSPTAA
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mRNA from alignment at M-pyrifera_M_contig11973:2169..2616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11973.4063.1 ID=mRNA_M-pyrifera_M_contig11973.4063.1|Name=mRNA_M-pyrifera_M_contig11973.4063.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=448bp|location=Sequence derived from alignment at M-pyrifera_M_contig11973:2169..2616- (Macrocystis pyrifera P11B4 male)
AGTACTGAGGCCAGCAGCGGAACCCTACCGCAAGCATCGCACGAGTATCA
TGGTCCAGAAGGCGTCGGAGTCATGTCTGCGTTGGAGTTTTTGCGTCAGC
TTGGTCTCATCGTTGAGGTACGTTTCGATACAACCCCACCGAATGTATCA
ATATGTGTTCGGCGTTTGCCAATATTTTTACTTTCGCTGCACTCGTCCCT
CACGACTCACAACTGTTTCTGCCTAGCGCTGTGAAAGCACAGAGGGCTGG
TCCTGCTATTTATCTCTCTCTCACGCCTTGTTCTATGTTTTTCAACAATT
AGGTTCGGTTACAGTTGCTCGGAGTCTACAGAGGGTGTTTTTCCGCAGGA
CATGTTCATGGTGTCGAATTGAGGTGCGACTTGTCTCTTTATTTTGCAAT
GCAGTGCCGAATTTGGTTGTCAACGCGGATGTCGCCAACAGCAGCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11973:2169..2616-

>mRNA_M-pyrifera_M_contig11973.4063.1 ID=mRNA_M-pyrifera_M_contig11973.4063.1|Name=mRNA_M-pyrifera_M_contig11973.4063.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig11973:2169..2616- (Macrocystis pyrifera P11B4 male)
AGTACTGAGGCCAGCAGCGGAACCCTACCGCAAGCATCGCACGAGTATCA
TGGTCCAGAAGGCGTCGGAGTCATGTCTGCGTTGGAGTTTTTGCGTCAGC
TTGGTCTCATCGTTGAGAGTACTGAGGCCAGCAGCGGAACCCTACCGCAA
GCATCGCACGAGTATCATGGTCCAGAAGGCGTCGGAGTCATGTCTGCGTT
GGAGTTTTTGCGTCAGCTTGGTCTCATCGTTGAGGTTCGGTTACAGTTGC
TCGGAGTCTACAGAGGGTGTTTTTCCGCAGGACATGTTCATGGTGTCGAA
TTGAGGTGCGACTTGTCTCTTTATTTTGCAATGCAGTGCCGAATTTGGTT
GTCAACGCGGATGTCGCCAACAGCAGCCGTTCGGTTACAGTTGCTCGGAG
TCTACAGAGGGTGTTTTTCCGCAGGACATGTTCATGGTGTCGAATTGAGG
TGCGACTTGTCTCTTTATTTTGCAATGCAGTGCCGAATTTGGTTGTCAAC
GCGGATGTCGCCAACAGCAGCC
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