Homology
BLAST of mRNA_M-pyrifera_M_contig101906.406.1 vs. uniprot
Match: A0A8J5RBF8_ZIZPA (Uncharacterized protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5RBF8_ZIZPA) HSP 1 Score: 48.5 bits (114), Expect = 7.000e-5 Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 1 Query: 28 EDKSPYTPPVFSELDIGLQASFHRFLIDLGVGDEFADAVRAVADQKEHFEYLRWLKKVHAAIS 216
EDK Y PVF LD LQ F R+L GV + A +VR QKEH +Y+ WLK + S
Sbjct: 159 EDK--YEGPVFRYLDPRLQLIFDRYLQARGVNSKLASSVRHHLIQKEHVQYVSWLKSLEEMFS 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 219 |
Cds size | 219 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815519.2705922-CDS-M-pyrifera_M_contig101906:326..545 | 1622815519.2705922-CDS-M-pyrifera_M_contig101906:326..545 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig101906 327..545 - |
1692277447.1029265-CDS-M-pyrifera_M_contig101906:326..545 | 1692277447.1029265-CDS-M-pyrifera_M_contig101906:326..545 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig101906 327..545 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101906.406.1 >prot_M-pyrifera_M_contig101906.406.1 ID=prot_M-pyrifera_M_contig101906.406.1|Name=mRNA_M-pyrifera_M_contig101906.406.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
PRGTDPRSIEDKSPYTPPVFSELDIGLQASFHRFLIDLGVGDEFADAVRA VADQKEHFEYLRWLKKVHAAIS* back to topmRNA from alignment at M-pyrifera_M_contig101906:327..545- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig101906.406.1 ID=mRNA_M-pyrifera_M_contig101906.406.1|Name=mRNA_M-pyrifera_M_contig101906.406.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig101906:327..545- (Macrocystis pyrifera P11B4 male) CCACGTGGCACTGACCCGCGCTCCATCGAAGACAAGTCCCCGTACACCCC
ACCAGTCTTCTCAGAACTCGACATCGGCCTCCAGGCGTCCTTCCACAGGT
TCCTCATCGACCTCGGCGTAGGAGACGAATTCGCCGATGCAGTCAGGGCA
GTCGCGGACCAGAAGGAACACTTTGAATACCTGCGCTGGCTCAAGAAAGT
GCACGCCGCAATCTCCTAA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig101906:327..545- >mRNA_M-pyrifera_M_contig101906.406.1 ID=mRNA_M-pyrifera_M_contig101906.406.1|Name=mRNA_M-pyrifera_M_contig101906.406.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig101906:327..545- (Macrocystis pyrifera P11B4 male) CCACGTGGCACTGACCCGCGCTCCATCGAAGACAAGTCCCCGTACACCCC ACCAGTCTTCTCAGAACTCGACATCGGCCTCCAGGCGTCCTTCCACAGGT TCCTCATCGACCTCGGCGTAGGAGACGAATTCGCCGATGCAGTCAGGGCA GTCGCGGACCAGAAGGAACACTTTGAATACCTGCGCTGGCTCAAGAAAGT GCACGCCGCAATCTCCTAACCACGTGGCACTGACCCGCGCTCCATCGAAG ACAAGTCCCCGTACACCCCACCAGTCTTCTCAGAACTCGACATCGGCCTC CAGGCGTCCTTCCACAGGTTCCTCATCGACCTCGGCGTAGGAGACGAATT CGCCGATGCAGTCAGGGCAGTCGCGGACCAGAAGGAACACTTTGAATACC TGCGCTGGCTCAAGAAAGTGCACGCCGCAATCTCCTAA back to top
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