mRNA_M-pyrifera_M_contig119530.4036.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119530.4036.1
Unique NamemRNA_M-pyrifera_M_contig119530.4036.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: A0A024UQM3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQM3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.910e-9
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    4 EAMVAEDRDNDIMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVLNSVGDRSK 246
            E  +AE R   I+ +WF  +DADGSG +  DEL+++L+ +GL+F+  +  ++++ ID D SG +D EEF Q L     R+K
Sbjct:   93 EFTIAEKR---ILREWFDLMDADGSGTVSTDELQEVLLTLGLAFTTDESMKIIQSIDVDGSGCVDFEEFVQALTPQQGRAK 170
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BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: C5KPT0_PERM5 (Centrin 3, putative n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KPT0_PERM5)

HSP 1 Score: 58.5 bits (140), Expect = 5.590e-9
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   19 EDRDNDIMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVLNSV 231
            +D++  ++  +F  +D DGSG +DV ELE+++V +GL+   +DVE+++  +DED SG I   EFH+ L+ V
Sbjct:    5 DDQERKMLRTYFDALDDDGSGSIDVSELEEVMVALGLAEKSSDVEKMVANVDEDGSGEI---EFHEFLSIV 72
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BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: A0A418BAG5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BAG5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.650e-9
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    4 EAMVAEDRDNDIMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVLNSVGDRSK 246
            E  +AE R   I+ +WF  +DADGSG +  DEL+++L+ +GL+F+  +  ++++ ID D SG +D EEF Q L     R+K
Sbjct:  764 EFTIAEKR---ILREWFDLMDADGSGTVSTDELQEVLLTLGLAFTTDESMKIIQSIDVDGSGCVDFEEFVQALTPQQGRAK 841
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BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: C5KPT1_PERM5 (Centrin 3, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KPT1_PERM5)

HSP 1 Score: 58.2 bits (139), Expect = 6.810e-9
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   19 EDRDNDIMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVLNSV 231
            +D++  ++  +F  +D DGSG +DV ELE+++V +GL+   +DVE+++  +DED SG I   EFH+ L  V
Sbjct:    5 DDQERKMLRTYFDALDDDGSGSIDVSELEEVMVALGLAEKSSDVEKMVANVDEDGSGEI---EFHEFLRIV 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: C5KPT2_PERM5 (Troponin C, skeletal muscle, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KPT2_PERM5)

HSP 1 Score: 57.8 bits (138), Expect = 1.530e-8
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   19 EDRDNDIMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVLNSV 231
            +D++  ++  +F  +D DGSG +DV ELE+++V +GL+   +DVE+++  +DED SG I   EFH+ L  V
Sbjct:    5 DDQERKMLRTYFDALDDDGSGSIDVTELEEVMVALGLAEKSSDVEKMVANVDEDGSGEI---EFHEFLRIV 72
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BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: A0A7S2A3B6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A3B6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.140e-8
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   25 RDNDIMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVL 222
            R+   +  WF  IDADGSGE+DV+EL   L+  GL+ +  DV EL++ +DED SG I   EF  ++
Sbjct:   29 REKRSLKAWFNRIDADGSGEIDVEELADPLLSSGLAQTMDDVRELVRGVDEDGSGAIGFSEFLNIM 94
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BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: G4YY28_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY28_PHYSP)

HSP 1 Score: 56.6 bits (135), Expect = 9.590e-8
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   37 IMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVL 222
            +M +WF  +DADGSGE+ +DELE  LV +GL+ SR DV+ L++E+D + +G +  + F  +L
Sbjct:   33 LMRRWFDSLDADGSGEVGLDELEDPLVSVGLACSRDDVQHLIEEVDLNGTGGVTFDAFLNLL 94
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BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: A0A0W8BWL7_PHYNI (Putative calcium-binding protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BWL7_PHYNI)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-7
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   37 IMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEF 210
            +M +WF  +DADGSGE+ +DELE  LV +GL+ SR DV+ L++E+D + +G +  + F
Sbjct:   33 LMRRWFDSLDADGSGEIGLDELEDPLVSVGLASSRDDVQHLIEEVDVNGTGSVTFDAF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: D0N7S9_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N7S9_PHYIT)

HSP 1 Score: 56.2 bits (134), Expect = 1.310e-7
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   37 IMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEF 210
            +M +WF  +DADGSGE+ +DELE  LV +GL+ SR DV+ L++E+D + +G +  + F
Sbjct:   33 LMRRWFDSLDADGSGEVGLDELEDPLVSVGLAASRDDVQRLIEEVDVNGTGSVTFDAF 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Match: A0A6A3FI43_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FI43_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.630e-7
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   37 IMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEELLKEIDEDKSGLIDREEFHQVL 222
            +M +WF  +DADGSGE+ +DELE  LV +GL+ SR DV+ L++E+D + +G +  + F  +L
Sbjct:  177 LMRRWFESLDADGSGEVGLDELEDPLVSVGLACSRDDVQHLIEEVDLNGTGGVTFDAFLNLL 238
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119530.4036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024UQM3_9STRA4.910e-940.74Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
C5KPT0_PERM55.590e-940.85Centrin 3, putative n=2 Tax=Perkinsus marinus (str... [more]
A0A418BAG5_9STRA5.650e-940.74Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
C5KPT1_PERM56.810e-940.85Centrin 3, putative n=1 Tax=Perkinsus marinus (str... [more]
C5KPT2_PERM51.530e-840.85Troponin C, skeletal muscle, putative n=1 Tax=Perk... [more]
A0A7S2A3B6_9STRA3.140e-845.45Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
G4YY28_PHYSP9.590e-845.16Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A0W8BWL7_PHYNI1.140e-746.55Putative calcium-binding protein n=1 Tax=Phytophth... [more]
D0N7S9_PHYIT1.310e-746.55Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A6A3FI43_9STRA1.630e-745.16Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119530contigM-pyrifera_M_contig119530:114..377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue5.9e-07
Seed eggNOG ortholog157072.XP_008862270.1
KEGG koko:K10840,ko:K16465
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400
Exons1
Model size264
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.4646184-CDS-M-pyrifera_M_contig119530:113..3681622815715.4646184-CDS-M-pyrifera_M_contig119530:113..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119530 114..368 -
1692277535.4639506-CDS-M-pyrifera_M_contig119530:113..3681692277535.4639506-CDS-M-pyrifera_M_contig119530:113..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119530 114..368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.477675-UTR-M-pyrifera_M_contig119530:368..3771622815715.477675-UTR-M-pyrifera_M_contig119530:368..377Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119530 369..377 -
1692277535.4786665-UTR-M-pyrifera_M_contig119530:368..3771692277535.4786665-UTR-M-pyrifera_M_contig119530:368..377Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119530 369..377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119530.4036.1prot_M-pyrifera_M_contig119530.4036.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119530 114..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119530.4036.1

>prot_M-pyrifera_M_contig119530.4036.1 ID=prot_M-pyrifera_M_contig119530.4036.1|Name=mRNA_M-pyrifera_M_contig119530.4036.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MVAEDRDNDIMDKWFAFIDADGSGELDVDELEKLLVGMGLSFSRADVEEL
LKEIDEDKSGLIDREEFHQVLNSVGDRSKGAKKWT
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mRNA from alignment at M-pyrifera_M_contig119530:114..377-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119530.4036.1 ID=mRNA_M-pyrifera_M_contig119530.4036.1|Name=mRNA_M-pyrifera_M_contig119530.4036.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig119530:114..377- (Macrocystis pyrifera P11B4 male)
GCAGAGGCTATGGTGGCTGAGGATCGTGATAACGACATTATGGACAAGTG
GTTCGCGTTTATTGACGCAGATGGCAGCGGAGAGCTGGATGTGGACGAGT
TGGAGAAGTTGTTGGTGGGCATGGGGTTGAGTTTCTCACGCGCAGACGTG
GAGGAGCTGTTGAAAGAGATTGATGAAGACAAATCGGGGCTCATTGACAG
GGAGGAGTTTCACCAAGTGCTTAACTCTGTTGGAGATCGGTCAAAAGGCG
CAAAGAAATGGACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119530:114..377-

>mRNA_M-pyrifera_M_contig119530.4036.1 ID=mRNA_M-pyrifera_M_contig119530.4036.1|Name=mRNA_M-pyrifera_M_contig119530.4036.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig119530:114..377- (Macrocystis pyrifera P11B4 male)
ATGGTGGCTGAGGATCGTGATAACGACATTATGGACAAGTGGTTCGCGTT
TATTGACGCAGATGGCAGCGGAGAGCTGGATGTGGACGAGTTGGAGAAGT
TGTTGGTGGGCATGGGGTTGAGTTTCTCACGCGCAGACGTGGAGGAGCTG
TTGAAAGAGATTGATGAAGACAAATCGGGGCTCATTGACAGGGAGGAGTT
TCACCAAGTGCTTAACTCTGTTGGAGATCGGTCAAAAGGCGCAAAGAAAT
GGACCATGGTGGCTGAGGATCGTGATAACGACATTATGGACAAGTGGTTC
GCGTTTATTGACGCAGATGGCAGCGGAGAGCTGGATGTGGACGAGTTGGA
GAAGTTGTTGGTGGGCATGGGGTTGAGTTTCTCACGCGCAGACGTGGAGG
AGCTGTTGAAAGAGATTGATGAAGACAAATCGGGGCTCATTGACAGGGAG
GAGTTTCACCAAGTGCTTAACTCTGTTGGAGATCGGTCAAAAGGCGCAAA
GAAATGGACC
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