mRNA_M-pyrifera_M_contig119508.4033.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig119508.4033.1 vs. uniprot
Match: A0A6C7EJF1_ILUCY (Uncharacterized protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EJF1_ILUCY) HSP 1 Score: 215 bits (548), Expect = 2.480e-62 Identity = 106/180 (58.89%), Postives = 140/180 (77.78%), Query Frame = 1
Query: 1 LVAGSGPSSQPSLSGDGHLIAFVTRAPDLQLIEVPATGSGDDGDLLLAELHDGRLSRLTTEVDGIVPTVGVHAHPDLSDTGRVAVFDTGAAAALLNDESATDRRVVAHVSDPQLSLADADTGTTQVGLRSDEWYVAVINDGPSSFEPASVAVTDDRFTIDAASAQNTCSLAATVPPGGSC 540
LVAG+ PSSQPS+S DG L+AFV++A +LQLI+ P G GDDG++L+AEL G L+R+TT VDG+VPT GVHAHPDLSDTGR V+D+ AA LL D + R+++A S P LSLADA+ GTT VGL+SDEWYVAV+NDGP++F+PA V++ + +F + ++TC+L A+VP GGSC
Sbjct: 405 LVAGTAPSSQPSISADGQLVAFVSKATNLQLIQSPGIGGGDDGEILVAELDRGALTRITTGVDGVVPTPGVHAHPDLSDTGRTTVYDSSAATDLLGDAALGGRQIIAKSSPPSLSLADANLGTTIVGLKSDEWYVAVLNDGPATFQPAEVSIDNAQFEL--IPDKSTCTLGASVPAGGSC 582
BLAST of mRNA_M-pyrifera_M_contig119508.4033.1 vs. uniprot
Match: A0A7Y1ZWG8_9ACTN (Choice-of-anchor D domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZWG8_9ACTN) HSP 1 Score: 185 bits (469), Expect = 3.000e-51 Identity = 92/180 (51.11%), Postives = 125/180 (69.44%), Query Frame = 1
Query: 1 LVAGSGPSSQPSLSGDGHLIAFVTRAPDLQLIEVPATGSGDDGDLLLAELHDGRLSRLTTEVDGIVPTVGVHAHPDLSDTGRVAVFDTGAAAALLNDESATDRRVVAHVSDPQLSLADADTGTTQVGLRSDEWYVAVINDGPSSFEPASVAVTDDRFTIDAASAQNTCSLAATVPPGGSC 540
LVAG+G S QP+LS DG L+AF+++AP+LQLI+ P G DGD+L+A+ L R+T DG+ PT+G HA P LSDTGR+ VFDT AA+ LL++ +A R++V+ + PQLSLADAD GTT VG+ S W+V ++NDGPS F+PA V + D RF +D + +TC + VP G C
Sbjct: 387 LVAGTGASFQPALSADGQLLAFISKAPNLQLIQAPGGGEPTDGDVLVADTGRDGLRRITVSSDGVRPTIGAHARPQLSDTGRITVFDTLAASQLLDEGAAPGRQIVSLSTPPQLSLADADVGTTLVGVESAGWFVGLVNDGPSGFQPAHVTIDDARFVLD--TENSTCLIGTLVPSGSRC 564
BLAST of mRNA_M-pyrifera_M_contig119508.4033.1 vs. uniprot
Match: A0A524N5A8_9ACTN (Choice-of-anchor D domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524N5A8_9ACTN) HSP 1 Score: 169 bits (428), Expect = 4.290e-46 Identity = 89/180 (49.44%), Postives = 120/180 (66.67%), Query Frame = 1
Query: 1 LVAGSGPSSQPSLSGDGHLIAFVTRAPDLQLIEVPATGSGDDGDLLLAELHDGRLSRLTTEVDGIVPTVGVHAHPDLSDTGRVAVFDTGAAAALLNDESATDRRVVAHVSDPQLSLADADTGTTQVGLRSDEWYVAVINDGPSSFEPASVAVTDDRFTIDAASAQNTCSLAATVPPGGSC 540
+VAG+ PSSQP+LS +G L+AF+T+A +LQL++ G DDGDLL+A+ G L RL DG+ P V H+ P LSDTGR A FDT A L+ D R+VV + P L+LA+AD G+T VG SDEW+VAVIN+G ++F P+ V V+D RF ++ + +TC+L A VPPG C
Sbjct: 220 VVAGTAPSSQPALSAEGQLVAFITKAANLQLVKASGGGEPDDGDLLVADARQGTLRRLAMTSDGVRPAVAAHSRPQLSDTGRTAAFDTLAGPQLVAD-GLPGRQVVTITTLPTLALAEADLGSTLVGFTSDEWFVAVINNGTTTFTPSIVTVSDRRFAVNQDA--STCALGAPVPPGADC 396
BLAST of mRNA_M-pyrifera_M_contig119508.4033.1 vs. uniprot
Match: A0A2E3TTL7_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TTL7_9ACTN) HSP 1 Score: 135 bits (340), Expect = 4.030e-34 Identity = 65/129 (50.39%), Postives = 92/129 (71.32%), Query Frame = 1
Query: 4 VAGSGPSSQPSLSGDGHLIAFVTRAPDLQLIEVPATGSGDDGDLLLAELHDGRLSRLTTEVDGIVPTVGVHAHPDLSDTGRVAVFDTGAAAALLNDESATDRRVVAHVSDPQLSLADADTGTTQVGLRS 390
V G+ S+QP+LS DGH++AFVT+AP+LQL+E P +G+ DGD+L ++ L R++ DG+ PT GVH+ P LSD+GR+ VFDT A LL++ ++ R++VA S P+LSL DAD GTT +GL S
Sbjct: 396 VVGTSASTQPALSADGHVLAFVTKAPNLQLLEAPGSGAVSDGDILASDKGRSDLRRISVSADGVRPTAGVHSRPQLSDSGRITVFDTLGATDLLSEGASVGRQIVALSSPPRLSLPDADVGTTIIGLES 524
BLAST of mRNA_M-pyrifera_M_contig119508.4033.1 vs. uniprot
Match: A0A539E460_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E460_9ACTN) HSP 1 Score: 110 bits (276), Expect = 5.890e-25 Identity = 71/181 (39.23%), Postives = 101/181 (55.80%), Query Frame = 1
Query: 1 LVAGSGPSSQPSLSGDGHLIAFVTRAPDLQLIEVPATGSGDDGDLLLAELHDGRLSRLTTEVDGIVPTVGVHAHPDLSDTGRVAVFDTGAAAALLNDESATDRRVVAHVSDPQLSLADA-DTGTTQVGLRSDEWYVAVINDGPSSFEPASVAVTDDRFTIDAASAQNTCSLAATVPPGGSC 540
VA ++QP++S DG + FVTR+ +L E A DGD+++A + G + R +T DGI P G +AHP LS +G V VFDT +A L+ E++ R VA ++ P A A D GT V WY+A+ N+GPS+F PA+V ++ F I TC+L VPPG +C
Sbjct: 356 FVAADSGATQPAISDDGSQVGFVTRSHNLFATESAAGVEPTDGDIVVASVDLGLVRRASTLADGISPGPGSNAHPALSASGHVVVFDTLSANLLVGYEASG--RQVATIARPARVTAPALDVGTVGVLFPGPTWYIAIRNEGPSTFLPATVESSNPDFAITG----GTCALGLPVPPGQAC 530
BLAST of mRNA_M-pyrifera_M_contig119508.4033.1 vs. uniprot
Match: A0A2U2ZZ67_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. Act143 TaxID=2200760 RepID=A0A2U2ZZ67_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 3.790e-5 Identity = 53/155 (34.19%), Postives = 72/155 (46.45%), Query Frame = 1
Query: 13 SGPSSQPSLSGDGHLIAFVTRAPDLQLIEVPATGSGDDG-DLLLAELHDGRLSRLTTEVDGIVPTVGVHAHPDLSDTGRVAVFDT--GAAAALLNDESATDRRVVAHVSDPQLSLADADTGTTQVGLRSDEWYVAVINDGPSSFEPASVAVTDDR 468
+GPS QP++S DGH++AFV+RA +L VP G DDG DL + +L G L R+ + D P LS GR + T GA +A+ + T R A V L +G L +D VA G S ++V V D R
Sbjct: 57 NGPSGQPAVSADGHVVAFVSRATNL----VP--GDPDDGADLFVRDLRTGTLRRVAADGDIYFPV--------LSADGRYVAYGTQNGAESAVHVRDLRTGRTERADVG-----LDPGHSGGQTPALSADGRTVAFAAYGVESENASAVYVRDLR 192 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119508.4033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig119508.4033.1 >prot_M-pyrifera_M_contig119508.4033.1 ID=prot_M-pyrifera_M_contig119508.4033.1|Name=mRNA_M-pyrifera_M_contig119508.4033.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp LVAGSGPSSQPSLSGDGHLIAFVTRAPDLQLIEVPATGSGDDGDLLLAELback to top mRNA from alignment at M-pyrifera_M_contig119508:3..542- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig119508.4033.1 ID=mRNA_M-pyrifera_M_contig119508.4033.1|Name=mRNA_M-pyrifera_M_contig119508.4033.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig119508:3..542- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig119508:3..542- >mRNA_M-pyrifera_M_contig119508.4033.1 ID=mRNA_M-pyrifera_M_contig119508.4033.1|Name=mRNA_M-pyrifera_M_contig119508.4033.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig119508:3..542- (Macrocystis pyrifera P11B4 male)back to top |