mRNA_M-pyrifera_M_contig119462.4021.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119462.4021.1
Unique NamemRNA_M-pyrifera_M_contig119462.4021.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: D8QMX0_SELML (Pre-mRNA-processing factor 19 n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QMX0_SELML)

HSP 1 Score: 94.0 bits (232), Expect = 8.340e-20
Identity = 51/134 (38.06%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 VVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQS--TALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSLLM 399
            ++TGGND  A+VF+R + + +A+L GH+K VT   F     +VLTAS+D + K+W    +   +  +T+  HSA + A+ VHP +   +F+TAS+D TWAF+++ SG     V    V    ++A  HPD L++
Sbjct:  234 ILTGGNDGNAIVFDRSSGEIVASLVGHSKKVTSVKFVARDDLVLTASADKTVKIWQGGEEGAYSCKQTLKEHSAEIRAITVHPTNR--FFVTASDDKTWAFYDLNSGTCTTQVTDAAVQDGYTAASFHPDGLIL 365          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: A0A8H7U7D2_MORIS (Pre-mRNA-processing factor 19 n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7U7D2_MORIS)

HSP 1 Score: 93.2 bits (230), Expect = 1.520e-19
Identity = 52/139 (37.41%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    4 VVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSG------VVLTASSDGSAKVWNPSAQSTAL-RTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSLLM 399
            V+TGGND    V++R+ +K LA L+GH K +T   F+G +       + ++AS+D S +VW    +   L   I  H + V A+ VHP  +  YF++AS D TWAFH  E+G+ L  V  P+  +  ++AH HPD +++
Sbjct:  226 VLTGGNDKHVQVYSREKEKVLANLTGHTKKITSVKFRGDTDGSEEIDIAVSASADKSVRVWGTGEKGYGLLHNIHAHKSDVNAITVHPSKD--YFVSASSDSTWAFHEYETGSTLLTVSDPETDAGYTAAHFHPDGMIL 362          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: A0A6B2L2U6_9EUKA (Pre-mRNA-processing factor 19 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L2U6_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 7.140e-19
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    4 VVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQSTA----------LRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHV 336
            ++TGG D TA+VF+R   KKLATL GH+K VT ++F   S ++ TAS D + +VW+PS   +A          L TI+ H+A +T + +HP     + +TAS D TWA H+I +GA L  V
Sbjct:  217 LLTGGVDTTAIVFDRNLTKKLATLQGHSKNVTCTLFHPSSELLFTASEDATVRVWSPSEPQSAEDSHQVPYKTLHTISRHTAPITQISLHPTEE--FLVTASADQTWALHDINTGATLLRV 335          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: A0A2T7PH89_POMCA (Pre-mRNA-processing factor 19 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PH89_POMCA)

HSP 1 Score: 87.8 bits (216), Expect = 1.320e-17
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 QVVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVAS------------AISSAHLHPDSLL 396
            ++VTGGND TAVVFN+ T++ +A L GH K VT  ++     +V+TAS D S +VW   A +   + I  H A VT + +H  + G Y ++ S D  WAF +I +G  L  VR  K +             A++ A  HPD L+
Sbjct:  297 RIVTGGNDKTAVVFNKDTEQVMAILKGHTKKVTSVIYHPEEEIVITASPDTSIRVWGV-ANAQCGQMIRAHDAPVTGISLH--ATGDYLLSCSTDMYWAFSDIRTGRVLTKVRDQKWSDGWESMVLRNRVPALTCAQFHPDGLI 437          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: A0A1Y3B3V0_EURMA (Pre-mRNA-processing factor 19 n=3 Tax=Pyroglyphidae TaxID=6952 RepID=A0A1Y3B3V0_EURMA)

HSP 1 Score: 85.9 bits (211), Expect = 5.880e-17
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 QVVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSLL 396
            +++TGGNDH AV+++R +++ +  L GH K V   +F      V+TAS D   +VW+   +S  L+ I  H + VT++ +H  + G Y ++ S D  W+F +I +G  L  V       ++++A  HPD L+
Sbjct:  235 KMITGGNDHNAVIYDRNSEQIVTILKGHGKKVNNVIFHSNQSNVITASPDAQIRVWSVP-ESKTLQVIHAHESPVTSISLH--ATGDYLLSTSNDEKWSFSDINTGKVLIKVGDQTANHSLTTAKFHPDGLI 363          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: A0A7I8W1T3_9ANNE (Pre-mRNA-processing factor 19 n=3 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W1T3_9ANNE)

HSP 1 Score: 84.3 bits (207), Expect = 2.060e-16
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    1 QVVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSLL 396
            +++TGGND TAVV+N++T   +ATL GH+K VT  V+     +  TAS D + +VW    +S     I  H   VT + +H  + G Y ++ S D  WAF +I +G  L  V     +  ++ A  HPD L+
Sbjct:  237 KIITGGNDKTAVVYNKETDCLVATLKGHSKKVTHVVYHPEEELAFTASPDQTIRVWGVK-ESKCAHVIRAHEMPVTGISLH--ATGDYLLSCSLDGYWAFSDIRNGRVLTRVGDKNSSVPLTCAQFHPDGLI 365          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: A0A6P6Y8P7_DERPT (Pre-mRNA-processing factor 19 n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6Y8P7_DERPT)

HSP 1 Score: 82.8 bits (203), Expect = 7.160e-16
Identity = 42/132 (31.82%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 QVVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSLL 396
            +++TGGNDH AV+++R +++ +  L GH K V   ++      V+T+S D   +VW+   +S  L  I  H ++VT++ +H  + G Y ++ S D  W+F +I +G  L  V        +++A  HPD L+
Sbjct:  238 KMITGGNDHNAVIYDRNSEQIVTILKGHNKKVNNVIYHSNQSNVITSSPDSQIRVWSVP-ESRTLEVINAHESSVTSISLH--ATGDYLLSTSNDEKWSFSDINTGKVLIKVGDQTANHTLTTAKFHPDGLI 366          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: A0A7S4HKD7_9EUKA (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HKD7_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 4.140e-14
Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 QVVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSLLM 399
            ++VTGG D +AV+F+R  KKKLATL+GH+K VTQ  F   S  + T S D + +VWN    S A ++ ++                           W FH+IE    +A      V+S +S   +HPD LL+
Sbjct:   69 KIVTGGVDGSAVLFDRAAKKKLATLTGHSKAVTQVSFHPDSTAIATGSQDKTIRVWNAEQGSNAYKSHSISXXXXXXXXXXXXXXXXXXXXXXXXXXWGFHDIERATTVATSSKDSVSSPMSCGGVHPDGLLL 201          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: M2Y6E8_GALSU (Pre-mRNA-processing factor 19 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6E8_GALSU)

HSP 1 Score: 77.4 bits (189), Expect = 5.660e-14
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1
Query:   16 GNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWN----PSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSLLM 399
            G   T   F   T+K L + S H  P+T  V      +++T+S D +A VW+       +  A  T+ +H   VT + +HP    SYF TASED TWAFH++E+G  L+  R+ K  + I+S  +HPD L++
Sbjct:  245 GXXXTVKFFTLDTEKTLTSFSAHKAPLTDLVVHPNENILITSSMDKTAVVWHWEDGDKPKPKAFNTVNIHEGVVTQIFLHPCL--SYFGTASEDCTWAFHDLETGDCLS--RTTKGPTGIASIAIHPDGLIL 372          
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Match: E4XNL8_OIKDI (Pre-mRNA-processing factor 19 n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4XNL8_OIKDI)

HSP 1 Score: 73.6 bits (179), Expect = 1.250e-12
Identity = 45/131 (34.35%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    1 QVVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSDGSAKVWNPSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAFHNIESGAPLAHVRSPKVASAISSAHLHPDSL 393
            ++VTG +++  VV++      ++   GH   V++ V+     VV +AS D + +VW  S +  A  TI  H AAVT + +HP+  GSY +++S+DH+WAF ++ESG  L   ++ +  + + S+  HPD L
Sbjct:  232 KIVTG-SENNVVVYDINAAAVVSKFDGHKGAVSKVVYHTNKDVVFSASEDSTVRVW--SLEGGAGTTIKAHKAAVTGIALHPL--GSYILSSSKDHSWAFSDVESGNILT--KATESEAKLESSDFHPDGL 355          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119462.4021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8QMX0_SELML8.340e-2038.06Pre-mRNA-processing factor 19 n=3 Tax=Selaginella ... [more]
A0A8H7U7D2_MORIS1.520e-1937.41Pre-mRNA-processing factor 19 n=1 Tax=Mortierella ... [more]
A0A6B2L2U6_9EUKA7.140e-1942.98Pre-mRNA-processing factor 19 n=1 Tax=Arcella inte... [more]
A0A2T7PH89_POMCA1.320e-1737.50Pre-mRNA-processing factor 19 n=2 Tax=Pomacea cana... [more]
A0A1Y3B3V0_EURMA5.880e-1733.33Pre-mRNA-processing factor 19 n=3 Tax=Pyroglyphida... [more]
A0A7I8W1T3_9ANNE2.060e-1636.36Pre-mRNA-processing factor 19 n=3 Tax=Dimorphilus ... [more]
A0A6P6Y8P7_DERPT7.160e-1631.82Pre-mRNA-processing factor 19 n=1 Tax=Dermatophago... [more]
A0A7S4HKD7_9EUKA4.140e-1434.59Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=V... [more]
M2Y6E8_GALSU5.660e-1436.36Pre-mRNA-processing factor 19 n=1 Tax=Galdieria su... [more]
E4XNL8_OIKDI1.250e-1234.35Pre-mRNA-processing factor 19 n=2 Tax=Oikopleura d... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119462contigM-pyrifera_M_contig119462:8..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score101.3
Seed ortholog evalue3.6e-19
Seed eggNOG ortholog78898.MVEG_05720T0
KEGG koko:K10599
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022607,GO:0022613,GO:0022618,GO:0032446,GO:0032991,GO:0034622,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0061630,GO:0061659,GO:0065003,GO:0070534,GO:0070647,GO:0071006,GO:0071012,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
EggNOG free text desc.Prp19/Pso4-like
EggNOG OGs1GT8H@112252,38CRU@33154,3NV8G@4751,KOG0289@1,KOG0289@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400,ko04121
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.7439513-CDS-M-pyrifera_M_contig119462:7..4061622815714.7439513-CDS-M-pyrifera_M_contig119462:7..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119462 8..406 -
1692277535.1814272-CDS-M-pyrifera_M_contig119462:7..4061692277535.1814272-CDS-M-pyrifera_M_contig119462:7..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119462 8..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119462.4021.1prot_M-pyrifera_M_contig119462.4021.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119462 8..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119462.4021.1

>prot_M-pyrifera_M_contig119462.4021.1 ID=prot_M-pyrifera_M_contig119462.4021.1|Name=mRNA_M-pyrifera_M_contig119462.4021.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
QVVTGGNDHTAVVFNRQTKKKLATLSGHAKPVTQSVFQGGSGVVLTASSD
GSAKVWNPSAQSTALRTIAVHSAAVTALQVHPVSNGSYFMTASEDHTWAF
HNIESGAPLAHVRSPKVASAISSAHLHPDSLLM
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mRNA from alignment at M-pyrifera_M_contig119462:8..406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119462.4021.1 ID=mRNA_M-pyrifera_M_contig119462.4021.1|Name=mRNA_M-pyrifera_M_contig119462.4021.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig119462:8..406- (Macrocystis pyrifera P11B4 male)
CAGGTGGTGACGGGCGGCAACGACCACACTGCGGTAGTGTTCAACAGGCA GACGAAGAAGAAGCTTGCGACGCTCTCGGGCCACGCCAAGCCCGTGACGC AGAGCGTTTTCCAGGGCGGCTCAGGTGTCGTCCTCACGGCGTCGAGCGAT GGCAGTGCAAAGGTTTGGAACCCCAGCGCACAGTCTACGGCACTGCGCAC GATCGCAGTGCACTCGGCTGCGGTGACTGCGTTGCAGGTGCACCCGGTGA GCAATGGCTCCTACTTCATGACTGCCTCCGAGGATCACACCTGGGCATTC CACAACATCGAGAGCGGCGCACCCCTCGCGCACGTGAGGAGCCCCAAGGT GGCCTCTGCCATCTCTTCTGCCCACCTCCACCCTGACTCCCTCCTCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119462:8..406-

>mRNA_M-pyrifera_M_contig119462.4021.1 ID=mRNA_M-pyrifera_M_contig119462.4021.1|Name=mRNA_M-pyrifera_M_contig119462.4021.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig119462:8..406- (Macrocystis pyrifera P11B4 male)
CAGGTGGTGACGGGCGGCAACGACCACACTGCGGTAGTGTTCAACAGGCA
GACGAAGAAGAAGCTTGCGACGCTCTCGGGCCACGCCAAGCCCGTGACGC
AGAGCGTTTTCCAGGGCGGCTCAGGTGTCGTCCTCACGGCGTCGAGCGAT
GGCAGTGCAAAGGTTTGGAACCCCAGCGCACAGTCTACGGCACTGCGCAC
GATCGCAGTGCACTCGGCTGCGGTGACTGCGTTGCAGGTGCACCCGGTGA
GCAATGGCTCCTACTTCATGACTGCCTCCGAGGATCACACCTGGGCATTC
CACAACATCGAGAGCGGCGCACCCCTCGCGCACGTGAGGAGCCCCAAGGT
GGCCTCTGCCATCTCTTCTGCCCACCTCCACCCTGACTCCCTCCTCATGC
AGGTGGTGACGGGCGGCAACGACCACACTGCGGTAGTGTTCAACAGGCAG
ACGAAGAAGAAGCTTGCGACGCTCTCGGGCCACGCCAAGCCCGTGACGCA
GAGCGTTTTCCAGGGCGGCTCAGGTGTCGTCCTCACGGCGTCGAGCGATG
GCAGTGCAAAGGTTTGGAACCCCAGCGCACAGTCTACGGCACTGCGCACG
ATCGCAGTGCACTCGGCTGCGGTGACTGCGTTGCAGGTGCACCCGGTGAG
CAATGGCTCCTACTTCATGACTGCCTCCGAGGATCACACCTGGGCATTCC
ACAACATCGAGAGCGGCGCACCCCTCGCGCACGTGAGGAGCCCCAAGGTG
GCCTCTGCCATCTCTTCTGCCCACCTCCACCCTGACTCCCTCCTCATG
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