mRNA_M-pyrifera_M_contig119456.4019.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119456.4019.1
Unique NamemRNA_M-pyrifera_M_contig119456.4019.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A2G2Y213_CAPAN (Hydrolase_4 domain-containing protein n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G2Y213_CAPAN)

HSP 1 Score: 96.3 bits (238), Expect = 6.050e-21
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 IFRSNPDVHYRKELLLTPDGGTLALDWL-----------GSVPVGSQPRT-VVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
             F   P  +Y+++L  TPDGGT+ALDWL           GS  + S  +T +V++ PGLT  S SAY++  + +  K   G   VV NHRGLGG  +TS  LYN   T DIR   D + ++YP   + A+G
Sbjct:  103 FFERVPACNYQRQLFKTPDGGTIALDWLRNVDVKKPSSEGSDGIPSDDKTPIVVVIPGLTSDSSSAYVKHLAFKMAKS--GWNVVVSNHRGLGGVAITSDSLYNAGYTEDIRKIIDHLHTQYPQAPLFAVG 231          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: UPI0007EF1ECC (embryogenesis-associated protein EMB8-like isoform X3 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF1ECC)

HSP 1 Score: 94.7 bits (234), Expect = 2.090e-20
Identity = 50/123 (40.65%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   16 PDVHYRKELLLTPDGGTLALDWLGSVPVGSQ---------PRTVVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
            P + Y++EL +TPDGGT+ALDW  +   G Q            VV++ PGLT  S++AY++ F+ +  K+      VV NHRGLGG  +TS   YNG  T DIR     I  RYP   +  +G
Sbjct:  122 PSLRYKRELFITPDGGTIALDWAMNQDAGMQVNGEIHTDDTEPVVVMVPGLTSDSDAAYVKHFAFKIVKR--RWKVVVSNHRGLGGISITSDCFYNGGWTEDIRTVVKHIHQRYPEAPLFVVG 242          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A830D8G5_9LAMI (Embryogenesis-associated protein emb8 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D8G5_9LAMI)

HSP 1 Score: 94.4 bits (233), Expect = 2.490e-20
Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    4 FRSNPDVHYRKELLLTPDGGTLALDWLGSVPVGSQPRT-VVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
            F ++P V YR+++ +T DGGTLALDW+ +  V    +  ++II PGLT  S SAYI   +    K+  G   VV NHRGLGG P+TS   YN   T DIR   + +  +YP   +  +G
Sbjct:  108 FGNSPAVKYRRQIFMTSDGGTLALDWVTNAEVKQDDKNPLMIIVPGLTSDSNSAYINHLAFNMGKR--GWNVVVSNHRGLGGVPITSDCFYNAGWTDDIRKVIEHLHCQYPEAPLFVVG 224          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A5N6MYE3_9ASTR (Hydrolase_4 domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MYE3_9ASTR)

HSP 1 Score: 93.2 bits (230), Expect = 5.730e-20
Identity = 55/132 (41.67%), Postives = 68/132 (51.52%), Query Frame = 1
Query:    1 IFRSNPDVHYRKELLLTPDGGTLALDWLGSVPVGSQPR-------------TVVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
             F   P  +YR+E+L+T DGGT+ALDWL    V  +                +VI+ PGLT   +S YI+  +    K+  G   VV NHRGLGG P+TS   YNG  T DIR     IRSR P   V  IG
Sbjct:   34 FFGRPPVFNYRREILITSDGGTVALDWLARSDVMEKKEGTGNDEADEDANTPIVIVIPGLTSDCDSVYIKHVAFYMAKR--GWNVVVSNHRGLGGVPLTSDFFYNGGWTEDIREVVQHIRSRSPDVPVFVIG 163          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A022QHB9_ERYGU (Hydrolase_4 domain-containing protein (Fragment) n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QHB9_ERYGU)

HSP 1 Score: 92.0 bits (227), Expect = 6.220e-20
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 IFRSNPDVHYRKELLLTPDGGTLALDWLGSVPVGSQP------------RTVVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
             F ++P V+YR+++ +T DGGTLALDW+ +  V  Q               ++II PGLT  S + Y++  +     +  G   VV NHRGLGG  +TS   YNG  T D+R   D +  ++P   +LA+G
Sbjct:  107 FFGNSPVVNYRRQIFMTSDGGTLALDWVENAKVKKQAFQTNDALQRDDKNPIIIIIPGLTSESNTPYVKHLAFNMANR--GWNVVVSNHRGLGGVSITSDCFYNGGWTEDVRKVIDHLHCQFPQAPLLAVG 235          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: UPI000C053395 (phospholipase ABHD3-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C053395)

HSP 1 Score: 91.7 bits (226), Expect = 7.050e-20
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 IFRSNPDVHYRKELLLTPDGGTLALDWL----GSVPVGSQPRTVVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
            + RS P V +R+E L+TPDGG + LDW      ++   +  R  V++ PGLTG SE++Y R   L   K   G   +V NHRG G + + +PR +  A+T D++F    I   YP + +LA+G
Sbjct:   81 LIRSRPSVPFRRETLVTPDGGIVCLDWFDNDDSTIYKDAASRPTVLVLPGLTGGSETSYCRHLVLLGEKL--GVRTIVANHRGFGASQLKTPRTFCAANTEDLKFVLSHIHGIYPESPILAMG 201          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A8H8IM04_9AGAM (Alpha/beta hydrolase family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8IM04_9AGAM)

HSP 1 Score: 93.2 bits (230), Expect = 8.630e-20
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    4 FRSNPDVHYRKELLLTPDGGTLALDWLGSVPVGSQPRTVVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
            F +   + Y ++L+  PD GTLALD+  S P  ++   + +I  GLTG S   YIR      T    G  AVV+N RG  GAPVTSPRLY+G  T D+R     IR+R+P++ ++ +G
Sbjct:  119 FENVDRIQYERKLIRVPDNGTLALDFAAS-PNATENSPIAVILHGLTGGSHEHYIRALLTDLTSPTVGFRAVVVNARGCAGAPVTSPRLYHGGTTDDLRCALIYIRARFPSSTLVGVG 235          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A5A7RED8_STRAF (Alpha/beta hydrolase domain containing protein 1 n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7RED8_STRAF)

HSP 1 Score: 92.8 bits (229), Expect = 1.380e-19
Identity = 50/130 (38.46%), Postives = 68/130 (52.31%), Query Frame = 1
Query:    4 FRSNPDVHYRKELLLTPDGGTLALDWLGSVPVGSQPRTV------------VIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
            F ++P V+YR+++ +T DGGTLALDW+ +     Q   V            +I+ PGLT  S S YI   +    K   G   VV NHRGLGG P+TS   YNG  T D+R   D +  +YP   +  +G
Sbjct:  102 FGNSPVVNYRRQIFMTSDGGTLALDWVKNANAKKQDYHVNDAVQQDDKNPLIIVVPGLTSDSNSPYINHLAFNMAKH--GWNVVVSNHRGLGGVPITSDNFYNGGWTEDVRKVIDHLHRQYPEAPLFVVG 229          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A2R6RGI4_ACTCC (Embryogenesis-associated protein n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RGI4_ACTCC)

HSP 1 Score: 92.8 bits (229), Expect = 1.400e-19
Identity = 54/131 (41.22%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 IFRSNPDVHYRKELLLTPDGGTLALDWL--GSVPVGS----------QPRTVVIIYPGLTGSSESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
             F   P  HY+++L  TPDGGT+ALDWL    VP  S            + +VI+ PGLT  S SAYI+ F+    K   G   VV NHRGLGG  +TS   YN   T DIR   D +  +YP   +  +G
Sbjct:  105 FFGRPPAFHYKRQLFHTPDGGTMALDWLVNSDVPDTSFQLKDAITKHDKKPIVIVIPGLTSDSSSAYIKHFAFNVAKC--GWNVVVTNHRGLGGISITSDCFYNAGWTEDIRKVIDHLHYQYPEAPLFVVG 233          
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Match: A0A6L5B7A9_APIGR (AB hydrolase-1 domain-containing protein n=1 Tax=Apium graveolens TaxID=4045 RepID=A0A6L5B7A9_APIGR)

HSP 1 Score: 92.8 bits (229), Expect = 1.420e-19
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   16 PDVHYRKELLLTPDGGTLALDWL---GSVPVGSQPRT-----VVIIYPGLTGSSESAYIRTFSLQCTKKIPGAC--AVVLNHRGLGGAPVTSPRLYNGADTRDIRFTADTIRSRYPTTHVLAIG 357
            P + Y++EL +TPDGGT+ALDW      + V  +  T     VV++ PGLT  S++AY++  + +  K+    C   VV NHRGLGG  +TS   YNG  T DIR   + I  RYP   +  +G
Sbjct:  110 PSLRYKRELFITPDGGTIALDWAVNSDGMKVNGEVHTDDKEPVVVVVPGLTSDSDAAYVKHLAFKIVKR----CWKVVVSNHRGLGGISITSDCFYNGGWTEDIRKVVEHIHQRYPEAPLFVVG 229          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119456.4019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G2Y213_CAPAN6.050e-2140.46Hydrolase_4 domain-containing protein n=4 Tax=Caps... [more]
UPI0007EF1ECC2.090e-2040.65embryogenesis-associated protein EMB8-like isoform... [more]
A0A830D8G5_9LAMI2.490e-2042.02Embryogenesis-associated protein emb8 n=1 Tax=Phth... [more]
A0A5N6MYE3_9ASTR5.730e-2041.67Hydrolase_4 domain-containing protein n=1 Tax=Mika... [more]
A0A022QHB9_ERYGU6.220e-2036.64Hydrolase_4 domain-containing protein (Fragment) n... [more]
UPI000C0533957.050e-2038.21phospholipase ABHD3-like n=1 Tax=Stylophora pistil... [more]
A0A8H8IM04_9AGAM8.630e-2041.53Alpha/beta hydrolase family protein n=2 Tax=Cerato... [more]
A0A5A7RED8_STRAF1.380e-1938.46Alpha/beta hydrolase domain containing protein 1 n... [more]
A0A2R6RGI4_ACTCC1.400e-1941.22Embryogenesis-associated protein n=2 Tax=Actinidia... [more]
A0A6L5B7A9_APIGR1.420e-1940.32AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119456contigM-pyrifera_M_contig119456:3..478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score98.2
Seed ortholog evalue2.7e-18
Seed eggNOG ortholog4155.Migut.B00783.1.p
KEGG koko:K07019,ko:K13696
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs37M39@33090,3GCBH@35493,44S7M@71274,COG0429@1,KOG1838@2759
COG Functional cat.S
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.5690641-CDS-M-pyrifera_M_contig119456:2..2601622815714.5690641-CDS-M-pyrifera_M_contig119456:2..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119456 3..260 +
1692277535.1077638-CDS-M-pyrifera_M_contig119456:2..2601692277535.1077638-CDS-M-pyrifera_M_contig119456:2..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119456 3..260 +
1622815714.5802593-CDS-M-pyrifera_M_contig119456:379..4781622815714.5802593-CDS-M-pyrifera_M_contig119456:379..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119456 380..478 +
1692277535.1224816-CDS-M-pyrifera_M_contig119456:379..4781692277535.1224816-CDS-M-pyrifera_M_contig119456:379..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119456 380..478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119456.4019.1prot_M-pyrifera_M_contig119456.4019.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119456 3..478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119456.4019.1

>prot_M-pyrifera_M_contig119456.4019.1 ID=prot_M-pyrifera_M_contig119456.4019.1|Name=mRNA_M-pyrifera_M_contig119456.4019.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
IFRSNPDVHYRKELLLTPDGGTLALDWLGSVPVGSQPRTVVIIYPGLTGS
SESAYIRTFSLQCTKKIPGACAVVLNHRGLGGAPVTSPRLYNGADTRDIR
FTADTIRSRYPTTHVLAIG
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mRNA from alignment at M-pyrifera_M_contig119456:3..478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119456.4019.1 ID=mRNA_M-pyrifera_M_contig119456.4019.1|Name=mRNA_M-pyrifera_M_contig119456.4019.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=476bp|location=Sequence derived from alignment at M-pyrifera_M_contig119456:3..478+ (Macrocystis pyrifera P11B4 male)
ATCTTCCGCTCCAACCCGGACGTACACTACAGGAAGGAGCTCCTCCTCAC GCCAGACGGAGGGACGCTCGCACTGGACTGGCTTGGTTCCGTGCCCGTGG GCAGCCAGCCGCGCACGGTGGTCATCATCTACCCAGGCCTCACTGGCTCC AGCGAGTCGGCATACATCCGCACGTTTTCACTGCAGTGCACAAAGAAGAT CCCAGGCGCATGCGCTGTGGTGCTCAACCACAGAGGCCTCGGAGGAGCTC CTGTCACAGTAAGTTCCCGTTCCCCTAGGCCCCCCACACTCTCTCTCCGC CAAGATCCTGGCAGGCCAAGTAGCCCAGTGGGCGAAGAAGGAGGGAGCGA CTGGCCATGCGACTGACGCTGAAACAGTCTCCTCGCCTCTACAATGGGGC TGACACCCGTGACATTCGCTTCACGGCGGATACAATCCGAAGCAGATACC CGACTACACATGTCCTGGCTATTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119456:3..478+

>mRNA_M-pyrifera_M_contig119456.4019.1 ID=mRNA_M-pyrifera_M_contig119456.4019.1|Name=mRNA_M-pyrifera_M_contig119456.4019.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig119456:3..478+ (Macrocystis pyrifera P11B4 male)
ATCTTCCGCTCCAACCCGGACGTACACTACAGGAAGGAGCTCCTCCTCAC
GCCAGACGGAGGGACGCTCGCACTGGACTGGCTTGGTTCCGTGCCCGTGG
GCAGCCAGCCGCGCACGGTGGTCATCATCTACCCAGGCCTCACTGGCTCC
AGCGAGTCGGCATACATCCGCACGTTTTCACTGCAGTGCACAAAGAAGAT
CCCAGGCGCATGCGCTGTGGTGCTCAACCACAGAGGCCTCGGAGGAGCTC
CTGTCACAATCTTCCGCTCCAACCCGGACGTACACTACAGGAAGGAGCTC
CTCCTCACGCCAGACGGAGGGACGCTCGCACTGGACTGGCTTGGTTCCGT
GCCCGTGGGCAGCCAGCCGCGCACGGTGGTCATCATCTACCCAGGCCTCA
CTGGCTCCAGCGAGTCGGCATACATCCGCACGTTTTCACTGCAGTGCACA
AAGAAGATCCCAGGCGCATGCGCTGTGGTGCTCAACCACAGAGGCCTCGG
AGGAGCTCCTGTCACATCTCCTCGCCTCTACAATGGGGCTGACACCCGTG
ACATTCGCTTCACGGCGGATACAATCCGAAGCAGATACCCGACTACACAT
GTCCTGGCTATTGGTTCTCCTCGCCTCTACAATGGGGCTGACACCCGTGA
CATTCGCTTCACGGCGGATACAATCCGAAGCAGATACCCGACTACACATG
TCCTGGCTATTGGT
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