mRNA_M-pyrifera_M_contig119446.4014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119446.4014.1
Unique NamemRNA_M-pyrifera_M_contig119446.4014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119446.4014.1 vs. uniprot
Match: A0A7C3SVI7_9BACT (Type II secretion system protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3SVI7_9BACT)

HSP 1 Score: 127 bits (320), Expect = 4.970e-33
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 1 
Query:    1 YVLTPYTLTIGIHEDESCRQLPLFATSYDANRNGKLDLMEYHPIGRKDPATGQYTFSTTRYNGKNQPMSDTMDEVQAQLQDGQRRPYVYVPYNRRQLNCVRKYWEENNDEFGANFDGTDPLLAGHLTFPPKLYDCFVLIGNGPGGDTGGLVADP 462
            ++L PYT  + +H D   + L  F+  +D NR+G++ LME+ P+G K  ATG YTF    Y G N P  +       +L D + RP+VY P N+RQ    R+YW EN   +  ++D T P+++  LTFP  +YD +VLI  GPGG T G+V +P
Sbjct:   89 FMLRPYTALLKVHGDR--KYLDEFSEGFDTNRDGRIGLMEFLPMGIKSQATGVYTFPDELYRGNNNPGGEL-----TRLMDMENRPFVYAPVNKRQFQKARRYWIENGFFYAESWDPTHPMISD-LTFPASVYDAYVLISVGPGGSTAGVVPEP 234
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BLAST of mRNA_M-pyrifera_M_contig119446.4014.1 vs. uniprot
Match: A0A7C1GUJ3_9BACT (Type II secretion system protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1GUJ3_9BACT)

HSP 1 Score: 116 bits (290), Expect = 1.940e-28
Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 1 
Query:    1 YVLTPYTLTIGIHEDESCRQLPLFATSYDANRNGKLDLMEYHPIGRKDPATGQYTFSTT--RYNGKNQPMSDTM-DEVQAQLQDGQRRPYVYVPYNRRQLNCVRKYWEENNDEFGANFDGTDPLLAGHLTFPPKLYDCFVLIGNGPGGDTGGLVADP 462
            Y L PY   +  H +E       F+TSYD + +G++ L+E+ P+G K P  G Y   +T  RY G+   ++D   +E+  QL    RRP++Y+P N+ Q +  +KYW +N  E+   +D +DP+L+  LTFPP+ YD FVLIG GP G+T G+V +P
Sbjct:  105 YNLMPYMARLRYHGNEE--MYDEFSTSYDTDNDGQIGLLEFSPVGFKKP-DGTYELDSTLPRYTGQ---VTDVFGEEINRQL-SATRRPFIYIPVNKLQFSKAQKYWLDNGSEYADIWDSSDPVLS-RLTFPPRTYDAFVLIGVGPSGNTFGVVPEP 253
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BLAST of mRNA_M-pyrifera_M_contig119446.4014.1 vs. uniprot
Match: A0A1V5YWY2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YWY2_9BACT)

HSP 1 Score: 113 bits (283), Expect = 1.490e-27
Identity = 63/155 (40.65%), Postives = 92/155 (59.35%), Query Frame = 1 
Query:    1 YVLTPYTLTIGIHEDESCRQLPLFATSYDANRNGKLDLMEYHPIGRKDP-ATGQYTFSTTRYNGKNQPMSDTMDEVQAQLQDGQRRPYVYVPYNRRQLNCVRKYWEENNDEFGANFDGTDPLLAGHLTFPPKLYDCFVLIGNGPGGDTGGLVADP 462
            Y L PY   +  H +E       F++SYD +++G+L L+EY P+G + P  T Q  FS  RY G   P  +   EV+ QLQ   RRP++Y+P N +Q + V++YW  + D F + ++ +DP     L+FPPK YD FVLI  GP G++ GL+ DP
Sbjct:   92 YNLQPYMFRMKYHGNEELSDE--FSSSYDTDKDGRLSLLEYSPLGVRQPNGTYQMDFSLPRYTGAVTP--EFYPEVERQLQ-ATRRPFIYIPVNLQQFSRVQRYWLNHADAFASRWNPSDPDFP-QLSFPPKHYDAFVLISLGPAGNSFGLLPDP 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119446.4014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7C3SVI7_9BACT4.970e-3340.91Type II secretion system protein n=1 Tax=Candidatu... [more]
A0A7C1GUJ3_9BACT1.940e-2840.13Type II secretion system protein n=1 Tax=Candidatu... [more]
A0A1V5YWY2_9BACT1.490e-2740.65Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119446contigM-pyrifera_M_contig119446:31..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.3580537-CDS-M-pyrifera_M_contig119446:30..4921622815714.3580537-CDS-M-pyrifera_M_contig119446:30..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119446 31..492 -
1692277535.0140028-CDS-M-pyrifera_M_contig119446:30..4921692277535.0140028-CDS-M-pyrifera_M_contig119446:30..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119446 31..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119446.4014.1prot_M-pyrifera_M_contig119446.4014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119446 31..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119446.4014.1

>prot_M-pyrifera_M_contig119446.4014.1 ID=prot_M-pyrifera_M_contig119446.4014.1|Name=mRNA_M-pyrifera_M_contig119446.4014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
YVLTPYTLTIGIHEDESCRQLPLFATSYDANRNGKLDLMEYHPIGRKDPA
TGQYTFSTTRYNGKNQPMSDTMDEVQAQLQDGQRRPYVYVPYNRRQLNCV
RKYWEENNDEFGANFDGTDPLLAGHLTFPPKLYDCFVLIGNGPGGDTGGL
VADP
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mRNA from alignment at M-pyrifera_M_contig119446:31..492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119446.4014.1 ID=mRNA_M-pyrifera_M_contig119446.4014.1|Name=mRNA_M-pyrifera_M_contig119446.4014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig119446:31..492- (Macrocystis pyrifera P11B4 male)
TACGTTTTGACGCCCTATACCCTAACCATCGGTATCCACGAGGACGAGTC
CTGCCGACAGCTGCCGCTCTTCGCGACATCCTACGACGCAAACCGCAACG
GCAAATTGGACCTCATGGAATACCATCCCATCGGCCGGAAAGACCCCGCC
ACTGGGCAATACACCTTTTCAACCACCCGCTACAACGGCAAAAACCAGCC
TATGTCTGACACGATGGACGAGGTCCAGGCCCAACTTCAAGACGGGCAAC
GACGCCCCTACGTGTATGTCCCCTACAACCGGCGGCAGTTGAACTGCGTC
CGCAAGTACTGGGAGGAAAACAACGACGAGTTTGGCGCCAACTTCGACGG
AACCGATCCCCTCCTTGCGGGGCATCTGACTTTCCCACCGAAACTTTATG
ACTGCTTCGTTCTCATCGGCAATGGCCCCGGGGGTGACACAGGGGGCCTT
GTCGCGGACCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119446:31..492-

>mRNA_M-pyrifera_M_contig119446.4014.1 ID=mRNA_M-pyrifera_M_contig119446.4014.1|Name=mRNA_M-pyrifera_M_contig119446.4014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig119446:31..492- (Macrocystis pyrifera P11B4 male)
TACGTTTTGACGCCCTATACCCTAACCATCGGTATCCACGAGGACGAGTC
CTGCCGACAGCTGCCGCTCTTCGCGACATCCTACGACGCAAACCGCAACG
GCAAATTGGACCTCATGGAATACCATCCCATCGGCCGGAAAGACCCCGCC
ACTGGGCAATACACCTTTTCAACCACCCGCTACAACGGCAAAAACCAGCC
TATGTCTGACACGATGGACGAGGTCCAGGCCCAACTTCAAGACGGGCAAC
GACGCCCCTACGTGTATGTCCCCTACAACCGGCGGCAGTTGAACTGCGTC
CGCAAGTACTGGGAGGAAAACAACGACGAGTTTGGCGCCAACTTCGACGG
AACCGATCCCCTCCTTGCGGGGCATCTGACTTTCCCACCGAAACTTTATG
ACTGCTTCGTTCTCATCGGCAATGGCCCCGGGGGTGACACAGGGGGCCTT
GTCGCGGACCCGTACGTTTTGACGCCCTATACCCTAACCATCGGTATCCA
CGAGGACGAGTCCTGCCGACAGCTGCCGCTCTTCGCGACATCCTACGACG
CAAACCGCAACGGCAAATTGGACCTCATGGAATACCATCCCATCGGCCGG
AAAGACCCCGCCACTGGGCAATACACCTTTTCAACCACCCGCTACAACGG
CAAAAACCAGCCTATGTCTGACACGATGGACGAGGTCCAGGCCCAACTTC
AAGACGGGCAACGACGCCCCTACGTGTATGTCCCCTACAACCGGCGGCAG
TTGAACTGCGTCCGCAAGTACTGGGAGGAAAACAACGACGAGTTTGGCGC
CAACTTCGACGGAACCGATCCCCTCCTTGCGGGGCATCTGACTTTCCCAC
CGAAACTTTATGACTGCTTCGTTCTCATCGGCAATGGCCCCGGGGGTGAC
ACAGGGGGCCTTGTCGCGGACCCG
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