mRNA_M-pyrifera_M_contig119445.4013.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119445.4013.1
Unique NamemRNA_M-pyrifera_M_contig119445.4013.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A5B7C0Z2_DAVIN (Putative xylulose kinase n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7C0Z2_DAVIN)

HSP 1 Score: 99.4 bits (246), Expect = 1.210e-24
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLPHPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQR 240
            E+R L+EG FLS+R HAER G+P P+R++ATGGASA+  ++  +A +FGC V   + +DSASLGAA RA HGW C +R
Sbjct:   35 EVRALIEGQFLSMRAHAERCGMPSPKRIIATGGASANHSILSSIASIFGCDVYTVQRSDSASLGAALRAAHGWLCNKR 112          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A0A9GIK5_ARUDO (FGGY_C domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9GIK5_ARUDO)

HSP 1 Score: 94.7 bits (234), Expect = 5.360e-23
Identity = 43/79 (54.43%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLP-HPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQR 240
            E+R ++EG FLS+R HAER GLP  P+R++ATGGAS++  +++ +A +FGCPV  ++ +DSASLGAA RA HGW C ++
Sbjct:   14 EVRAIIEGQFLSMRGHAERCGLPVPPKRIIATGGASSNPLILKTMASIFGCPVYTSQRSDSASLGAALRAAHGWLCDRQ 92          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A453CCW5_AEGTS (FGGY_C domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CCW5_AEGTS)

HSP 1 Score: 95.5 bits (236), Expect = 8.660e-23
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLP-HPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQR 240
            E+R L+EG F+S+R HAER GLP  P+R++ATGGAS++  +++ LA VFGCPV   +  DSASLGAA RA HGW C+++
Sbjct:   62 EVRALIEGQFMSMRGHAERCGLPVPPKRIIATGGASSNQAILKTLASVFGCPVYTVQRPDSASLGAALRAAHGWLCKKQ 140          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A6P3ZFN9_ZIZJJ (xylulose kinase 2-like n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZFN9_ZIZJJ)

HSP 1 Score: 95.9 bits (237), Expect = 9.770e-23
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLPHPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQ 237
            E+R LVEG FLS+R HAER G+P P+R++ATGGAS +  ++  +A +FGC +   +  DSASLGAA RA HGW C +
Sbjct:   89 EVRALVEGQFLSMRAHAERFGMPSPKRIIATGGASTNQSILSSIASIFGCDIYTVQRPDSASLGAALRAAHGWLCNK 165          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A6I9QS67_ELAGV (Xylulose kinase n=5 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QS67_ELAGV)

HSP 1 Score: 99.8 bits (247), Expect = 1.070e-22
Identity = 42/77 (54.55%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLPHPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQ 237
            E+R ++EG FLS+R HAER+G+P P+R++ATGGAS++  +++V+A++FGCP+   +  DSASLGAA RA HGW C +
Sbjct:  421 EVRAIIEGQFLSMRGHAERIGMPTPKRIIATGGASSNACILKVIANIFGCPIYTVQRPDSASLGAALRAAHGWLCNK 497          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A5B7AQ29_DAVIN (Putative xylulose kinase (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AQ29_DAVIN)

HSP 1 Score: 94.0 bits (232), Expect = 1.500e-22
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLPHP-ERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQR 240
            E+R ++EG FLS+R HAER G+P P +R++ATGGASA+  ++  +A +FGC V   +  DSASLGAA RA HGW C +R
Sbjct:   33 EVRAVIEGQFLSMRAHAERFGMPSPPKRIIATGGASANNNILSSIASIFGCDVYTVQRPDSASLGAALRAAHGWLCHKR 111          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A5B7ASC5_DAVIN (Xylulose kinase n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7ASC5_DAVIN)

HSP 1 Score: 99.4 bits (246), Expect = 1.520e-22
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLPHPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQR 240
            E+R L+EG FLS+R HAER G+P P+R++ATGGASA+  ++  +A +FGC V   + +DSASLGAA RA HGW C +R
Sbjct:  444 EVRALIEGQFLSMRAHAERCGMPSPKRIIATGGASANHSILSSIASIFGCDVYTVQRSDSASLGAALRAAHGWLCNKR 521          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A349H3M6_9BACT (FGGY_C domain-containing protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A349H3M6_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 2.010e-22
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 AQELRVLVEGHFLSLRLHAERLGLPHPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQR 240
            AQ+ R + EG FLS+RLH + +GL  P+R++ATGGAS    L++V+ DVFG PV  AE +DSASLGAA+RALHGW C ++
Sbjct:   40 AQDCRAVYEGQFLSMRLHGQHVGLV-PQRILATGGASVDMSLIRVMCDVFGTPVYVAEKSDSASLGAAYRALHGWLCARQ 118          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A5J9WLG1_9POAL (Xylulose kinase n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WLG1_9POAL)

HSP 1 Score: 98.6 bits (244), Expect = 2.800e-22
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLP-HPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQR 240
            E+R ++EG FLS+R HAER GLP  P+R++ATGGAS++T +++ +A +FGCPV  ++ +DSASLGAA RA HGW C Q+
Sbjct:  424 EVRAIIEGQFLSMRGHAERCGLPVPPKRIIATGGASSNTLILKTMASIFGCPVYTSQRSDSASLGAALRAAHGWLCNQQ 502          
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Match: A0A8K0HU66_COCNU (Xylulose kinase 2 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0HU66_COCNU)

HSP 1 Score: 97.8 bits (242), Expect = 5.370e-22
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    7 ELRVLVEGHFLSLRLHAERLGLPHPERLVATGGASASTQLMQVLADVFGCPVARAEHTDSASLGAAFRALHGWTCQQ 237
            E+R ++EG FLS+R HA R+G+P P+R++ATGGAS++  +++V+A++FGCPV   +  DSASLGAA RA HGW C +
Sbjct:  447 EVRAIIEGQFLSMRGHATRIGMPTPKRIIATGGASSNACILKVIANIFGCPVYTVQRPDSASLGAALRAAHGWLCDK 523          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119445.4013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B7C0Z2_DAVIN1.210e-2456.41Putative xylulose kinase n=1 Tax=Davidia involucra... [more]
A0A0A9GIK5_ARUDO5.360e-2354.43FGGY_C domain-containing protein n=1 Tax=Arundo do... [more]
A0A453CCW5_AEGTS8.660e-2356.96FGGY_C domain-containing protein n=2 Tax=Aegilops ... [more]
A0A6P3ZFN9_ZIZJJ9.770e-2354.55xylulose kinase 2-like n=2 Tax=Ziziphus jujuba Tax... [more]
A0A6I9QS67_ELAGV1.070e-2254.55Xylulose kinase n=5 Tax=Arecaceae TaxID=4710 RepID... [more]
A0A5B7AQ29_DAVIN1.500e-2254.43Putative xylulose kinase (Fragment) n=1 Tax=Davidi... [more]
A0A5B7ASC5_DAVIN1.520e-2256.41Xylulose kinase n=1 Tax=Davidia involucrata TaxID=... [more]
A0A349H3M6_9BACT2.010e-2257.50FGGY_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A5J9WLG1_9POAL2.800e-2256.96Xylulose kinase n=1 Tax=Eragrostis curvula TaxID=3... [more]
A0A8K0HU66_COCNU5.370e-2254.55Xylulose kinase 2 n=1 Tax=Cocos nucifera TaxID=138... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119445contigM-pyrifera_M_contig119445:148..444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.4
Seed ortholog evalue8.2e-19
Seed eggNOG ortholog42345.XP_008805751.1
KEGG rclassRC00002,RC00538
KEGG koko:K00854
KEGG ReactionR01639
KEGG Pathwayko00040,ko01100,map00040,map01100
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046835,GO:0071704
EggNOG free text desc.FGGY family of carbohydrate kinases, N-terminal domain
EggNOG OGs37HTY@33090,3G8H2@35493,3KT9E@4447,COG1070@1,KOG2531@2759
EC2.7.1.17
COG Functional cat.G
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.3084035-CDS-M-pyrifera_M_contig119445:147..2091622815714.3084035-CDS-M-pyrifera_M_contig119445:147..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119445 148..209 +
1692277534.9948416-CDS-M-pyrifera_M_contig119445:147..2091692277534.9948416-CDS-M-pyrifera_M_contig119445:147..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119445 148..209 +
1622815714.3210652-CDS-M-pyrifera_M_contig119445:266..4441622815714.3210652-CDS-M-pyrifera_M_contig119445:266..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119445 267..444 +
1692277535.0054157-CDS-M-pyrifera_M_contig119445:266..4441692277535.0054157-CDS-M-pyrifera_M_contig119445:266..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119445 267..444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119445.4013.1prot_M-pyrifera_M_contig119445.4013.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119445 148..444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119445.4013.1

>prot_M-pyrifera_M_contig119445.4013.1 ID=prot_M-pyrifera_M_contig119445.4013.1|Name=mRNA_M-pyrifera_M_contig119445.4013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
AQELRVLVEGHFLSLRLHAERLGLPHPERLVATGGASASTQLMQVLADVF
GCPVARAEHTDSASLGAAFRALHGWTCQQR
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mRNA from alignment at M-pyrifera_M_contig119445:148..444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119445.4013.1 ID=mRNA_M-pyrifera_M_contig119445.4013.1|Name=mRNA_M-pyrifera_M_contig119445.4013.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig119445:148..444+ (Macrocystis pyrifera P11B4 male)
GCGCAAGAGCTGCGAGTGCTGGTGGAGGGCCACTTCTTGTCCTTGCGTCT CCACGCTGAGAGGTGGGTGCCGTGGCCAGCTGTCCCACTAGTGTGCACAT GCTCATGTACCGCTTGCAGACTGGGACTGCCGCACCCGGAGCGTCTGGTG GCAACGGGCGGTGCATCTGCGAGCACGCAGCTGATGCAGGTCCTGGCTGA CGTGTTTGGCTGTCCCGTTGCCAGGGCTGAGCACACTGACTCTGCATCTC TGGGCGCGGCGTTCCGAGCCTTGCATGGCTGGACTTGCCAGCAGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119445:148..444+

>mRNA_M-pyrifera_M_contig119445.4013.1 ID=mRNA_M-pyrifera_M_contig119445.4013.1|Name=mRNA_M-pyrifera_M_contig119445.4013.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig119445:148..444+ (Macrocystis pyrifera P11B4 male)
GCGCAAGAGCTGCGAGTGCTGGTGGAGGGCCACTTCTTGTCCTTGCGTCT
CCACGCTGAGAGGCGCAAGAGCTGCGAGTGCTGGTGGAGGGCCACTTCTT
GTCCTTGCGTCTCCACGCTGAGAGACTGGGACTGCCGCACCCGGAGCGTC
TGGTGGCAACGGGCGGTGCATCTGCGAGCACGCAGCTGATGCAGGTCCTG
GCTGACGTGTTTGGCTGTCCCGTTGCCAGGGCTGAGCACACTGACTCTGC
ATCTCTGGGCGCGGCGTTCCGAGCCTTGCATGGCTGGACTTGCCAGCAGC
GAACTGGGACTGCCGCACCCGGAGCGTCTGGTGGCAACGGGCGGTGCATC
TGCGAGCACGCAGCTGATGCAGGTCCTGGCTGACGTGTTTGGCTGTCCCG
TTGCCAGGGCTGAGCACACTGACTCTGCATCTCTGGGCGCGGCGTTCCGA
GCCTTGCATGGCTGGACTTGCCAGCAGCGA
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