mRNA_M-pyrifera_M_contig119441.4011.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119441.4011.1
Unique NamemRNA_M-pyrifera_M_contig119441.4011.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: A0A5C5WBX0_9BACT (MORN repeat variant n=1 Tax=Botrimarina hoheduenensis TaxID=2528000 RepID=A0A5C5WBX0_9BACT)

HSP 1 Score: 107 bits (266), Expect = 2.220e-25
Identity = 88/136 (64.71%), Postives = 105/136 (77.21%), Query Frame = 1
Query:    1 NGQVAKEVTYQGGKPNGKVKMLNEEGKLVAVREYSQGSRTGTWVSYDETGEQKLREENYVDGKADGIFRVWYSNGQLRQEITFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVLKQTYEEGKLV 408
            NGQ+AK VT+  G+P+GKV +L E+GK +A R          W  +DETGEQ LREE Y  GKADG ++ WY+NGQ+RQ  TF+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DGKV+++ Y+EGKLV
Sbjct:  157 NGQIAKRVTFVSGRPDGKVDLLREDGKRLATRXXXXXXXXXVWTYFDETGEQPLREERYTSGKADGEWKSWYTNGQMRQVTTFKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPDGKVIERLYDEGKLV 292          
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: A0A518DH16_9BACT (MORN repeat variant n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DH16_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 2.730e-18
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 NGQVAKEVTYQGGKPNGKVKMLNEEGKLVAVREYSQGSRTGTWVSY----DETGEQ-KLREENYVDGKADGIFRVWYSNGQLRQEITFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVLKQTYEEGKLV 408
            NG+VAK+VTY  GKP+G ++ L+ +G++++  EY+ G R G WV+Y    DE+ E  K+REE+Y DGK  G+++ W  +G   QE  F+                        XXXXXXXXXXX  DGKV++QT+++G+L 
Sbjct:  121 NGEVAKKVTYVDGKPDGVIETLDPQGRVLSHGEYAVGKRKGDWVTYAPSDDESAELVKVREEHYADGKPTGVWKTWRVDGSPAQETPFEDGVLNGVATEWDEAGDKRAEITFVXXXXXXXXXXXRADGKVVEQTFDDGRLT 261          
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: A0A5C6A7J7_9BACT (MORN repeat variant n=1 Tax=Botrimarina colliarenosi TaxID=2528001 RepID=A0A5C6A7J7_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-15
Identity = 77/137 (56.20%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 NGQVAKEVTYQGGKPNGKVKMLNEEGKLVAVREYSQGSRTGTWVSYDETGEQKLREENYVDGKADGIFRVWYSNGQLRQEITFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVLKQTYEEGKLVT 411
            NG VAKEVTY+ G+P+                            +Y + GEQKLREE Y +G A+G FR WY+NGQ+RQE  F XXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXX  DGKV++QTY+EG+LV+
Sbjct:  123 NGTVAKEVTYKQGRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYSDDGEQKLREETYEEGVANGPFRTWYTNGQIRQETNFVXXXXXXLATEXXXXXXXXXXXXXXXXXXXXXXXXXQTDGKVIEQTYDEGQLVS 259          
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: A0A1M4TJ67_9FLAO (Uncharacterized protein n=10 Tax=Arenibacter TaxID=178469 RepID=A0A1M4TJ67_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 1.630e-8
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 NGQVAKEVTYQGGKPNGKVKMLNEEGKLVAVREYSQGSRTGTWVSYDETGEQKLREENYVDGKADGIFRVWYSNGQL 231
            NG V++E  +  GK +G+ KM  E+GK +A+ EY++G +TG W  +D    +KL+E ++VD K   +   W S GQL
Sbjct:   40 NGVVSQEGHFLNGKLHGEWKMFGEDGKKIAMGEYTEGKKTGKWFFWDA---KKLKEVDFVDSKIANVTE-WNSMGQL 112          
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: UPI000CD44CBD (nicotinic acid mononucleotide adenyltransferase n=3 Tax=Arenibacter TaxID=178469 RepID=UPI000CD44CBD)

HSP 1 Score: 57.4 bits (137), Expect = 6.510e-8
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 NGQVAKEVTYQGGKPNGKVKMLNEEGKLVAVREYSQGSRTGTWVSYDETGEQKLREENYVDGKADGIFRVWYSNGQL 231
            NG V++E  +  GK +G+ KM  E+GK +A+ EY+QG +TG W  +D    + L+E ++VDGK   + + W   G+L
Sbjct:   40 NGVVSQEGHFLNGKLHGEWKMFGEDGKKIAMGEYTQGKKTGKWFFWDT---KMLKEVDFVDGKIANVTQ-WNGVGEL 112          
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: A0A372H083_9FLAO (Nicotinic acid mononucleotide adenyltransferase n=1 Tax=Arenibacter sp. P308M17 TaxID=2303391 RepID=A0A372H083_9FLAO)

HSP 1 Score: 57.0 bits (136), Expect = 8.950e-8
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 NGQVAKEVTYQGGKPNGKVKMLNEEGKLVAVREYSQGSRTGTWVSYDETGEQKLREENYVDGKADGIFRVWYSNGQL 231
            NG V++E  +  GK +G+ KM +E+GK +A+ EY++G +TG W  +D    +KL+E ++VD K   +   W + GQL
Sbjct:   40 NGTVSQEGHFLKGKLHGEWKMYSEDGKKIAMGEYTEGKKTGKWFFWDA---KKLKEVDFVDSKIANVTE-WDNAGQL 112          
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: A0A661ZFI3_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661ZFI3_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-6
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  115 RTGTWVSYDETGEQKLREENYVDGKADGIFRVWYSNGQLRQEITFQ 252
            + G W+ +    E+K+ E NY+DGK +G+++ +YSNG L+ EITF+
Sbjct:   40 KQGYWIKHKPYSEEKITEGNYIDGKKEGLWKSYYSNGSLKSEITFR 85          
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Match: A0A1H5JYF5_9FLAO (Antitoxin component YwqK of the YwqJK toxin-antitoxin module n=2 Tax=unclassified Tenacibaculum TaxID=2635139 RepID=A0A1H5JYF5_9FLAO)

HSP 1 Score: 52.8 bits (125), Expect = 1.830e-5
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   55 VKMLNEEGKLVAVREYSQGSRTGTWVSYDETGEQKLREENYVDGKADGIFRVWYSNGQLRQ 237
            VK     GKL +  +    +R GTW+ Y   G++ + EENY +GK DG+ + +Y+NG+L +
Sbjct:   90 VKFYTITGKLKSKGKMKGKNREGTWLYYFPNGKKIISEENYANGKLDGVLKNYYTNGKLTE 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119441.4011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A5C5WBX0_9BACT2.220e-2564.71MORN repeat variant n=1 Tax=Botrimarina hoheduenen... [more]
A0A518DH16_9BACT2.730e-1841.13MORN repeat variant n=1 Tax=Pirellulimonas nuda Ta... [more]
A0A5C6A7J7_9BACT1.450e-1556.20MORN repeat variant n=1 Tax=Botrimarina colliareno... [more]
A0A1M4TJ67_9FLAO1.630e-840.26Uncharacterized protein n=10 Tax=Arenibacter TaxID... [more]
UPI000CD44CBD6.510e-838.96nicotinic acid mononucleotide adenyltransferase n=... [more]
A0A372H083_9FLAO8.950e-838.96Nicotinic acid mononucleotide adenyltransferase n=... [more]
A0A661ZFI3_9BACT2.640e-643.48Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A1H5JYF5_9FLAO1.830e-537.70Antitoxin component YwqK of the YwqJK toxin-antito... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119441contigM-pyrifera_M_contig119441:6..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.2375016-CDS-M-pyrifera_M_contig119441:5..4311622815714.2375016-CDS-M-pyrifera_M_contig119441:5..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119441 6..431 +
1692277534.976349-CDS-M-pyrifera_M_contig119441:5..4311692277534.976349-CDS-M-pyrifera_M_contig119441:5..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119441 6..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119441.4011.1prot_M-pyrifera_M_contig119441.4011.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119441 6..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119441.4011.1

>prot_M-pyrifera_M_contig119441.4011.1 ID=prot_M-pyrifera_M_contig119441.4011.1|Name=mRNA_M-pyrifera_M_contig119441.4011.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
NGQVAKEVTYQGGKPNGKVKMLNEEGKLVAVREYSQGSRTGTWVSYDETG
EQKLREENYVDGKADGIFRVWYSNGQLRQEITFQGGKRDGLATEWSRVGD
KRAEITFKDNLKDGPTTVWQRDGKVLKQTYEEGKLVTTNDG*
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mRNA from alignment at M-pyrifera_M_contig119441:6..431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119441.4011.1 ID=mRNA_M-pyrifera_M_contig119441.4011.1|Name=mRNA_M-pyrifera_M_contig119441.4011.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig119441:6..431+ (Macrocystis pyrifera P11B4 male)
AATGGGCAGGTCGCCAAAGAAGTGACCTATCAAGGCGGCAAGCCGAACGG CAAAGTCAAGATGCTGAACGAGGAAGGCAAGCTCGTCGCGGTCCGCGAGT ACTCCCAGGGAAGCCGCACCGGCACGTGGGTGAGCTACGACGAGACCGGC GAGCAGAAGCTCCGCGAGGAGAACTACGTTGATGGCAAAGCCGACGGGAT CTTCCGTGTCTGGTACTCCAACGGCCAGCTCCGCCAGGAGATCACCTTCC AGGGCGGAAAGCGGGACGGCTTGGCGACCGAGTGGAGCCGCGTCGGCGAC AAGCGGGCCGAGATCACGTTCAAGGACAATCTGAAAGACGGGCCCACAAC CGTCTGGCAGCGCGACGGCAAAGTCCTGAAGCAGACTTACGAGGAAGGCA AGCTCGTTACGACCAACGACGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119441:6..431+

>mRNA_M-pyrifera_M_contig119441.4011.1 ID=mRNA_M-pyrifera_M_contig119441.4011.1|Name=mRNA_M-pyrifera_M_contig119441.4011.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig119441:6..431+ (Macrocystis pyrifera P11B4 male)
AATGGGCAGGTCGCCAAAGAAGTGACCTATCAAGGCGGCAAGCCGAACGG
CAAAGTCAAGATGCTGAACGAGGAAGGCAAGCTCGTCGCGGTCCGCGAGT
ACTCCCAGGGAAGCCGCACCGGCACGTGGGTGAGCTACGACGAGACCGGC
GAGCAGAAGCTCCGCGAGGAGAACTACGTTGATGGCAAAGCCGACGGGAT
CTTCCGTGTCTGGTACTCCAACGGCCAGCTCCGCCAGGAGATCACCTTCC
AGGGCGGAAAGCGGGACGGCTTGGCGACCGAGTGGAGCCGCGTCGGCGAC
AAGCGGGCCGAGATCACGTTCAAGGACAATCTGAAAGACGGGCCCACAAC
CGTCTGGCAGCGCGACGGCAAAGTCCTGAAGCAGACTTACGAGGAAGGCA
AGCTCGTTACGACCAACGACGGGTAGAATGGGCAGGTCGCCAAAGAAGTG
ACCTATCAAGGCGGCAAGCCGAACGGCAAAGTCAAGATGCTGAACGAGGA
AGGCAAGCTCGTCGCGGTCCGCGAGTACTCCCAGGGAAGCCGCACCGGCA
CGTGGGTGAGCTACGACGAGACCGGCGAGCAGAAGCTCCGCGAGGAGAAC
TACGTTGATGGCAAAGCCGACGGGATCTTCCGTGTCTGGTACTCCAACGG
CCAGCTCCGCCAGGAGATCACCTTCCAGGGCGGAAAGCGGGACGGCTTGG
CGACCGAGTGGAGCCGCGTCGGCGACAAGCGGGCCGAGATCACGTTCAAG
GACAATCTGAAAGACGGGCCCACAACCGTCTGGCAGCGCGACGGCAAAGT
CCTGAAGCAGACTTACGAGGAAGGCAAGCTCGTTACGACCAACGACGGGT
AG
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