mRNA_M-pyrifera_M_contig119430.4009.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119430.4009.1
Unique NamemRNA_M-pyrifera_M_contig119430.4009.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: Q54TS3_DICDI (COBW domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54TS3_DICDI)

HSP 1 Score: 97.4 bits (241), Expect = 9.380e-22
Identity = 44/95 (46.32%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQ 285
            I TVC+T +  +DL +  RW+G L W   K   + R KG +S++G D+KY LQGV+ATFE+ PS + WS+ E+R +K+VLIG+SL++ +L+ +F+
Sbjct:  299 INTVCITEDGDIDLTEFNRWIGNLLWEEKKDC-IFRCKGLISVKGQDEKYILQGVYATFEVLPSGLLWSKDEKRHNKIVLIGESLNQNELEQSFK 392          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: Q9FUB1_ARATH (PRLI-interacting factor L (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9FUB1_ARATH)

HSP 1 Score: 87.8 bits (216), Expect = 5.360e-19
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            +G+V +  E  +DLEK   WLG L +  N+  D+ RMKG LS+Q  D+++  QGVH  FE SP ++ W + E R +K+V IGK+L+R +L+  F+ C
Sbjct:  150 VGSVSIVCEGDLDLEKANMWLGALLYQRNE--DIYRMKGILSVQDMDERFVFQGVHEIFEGSPDRL-WRKDETRTNKIVFIGKNLNREELEMGFRAC 243          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A565ARE2_9BRAS (CobW C-terminal domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565ARE2_9BRAS)

HSP 1 Score: 83.6 bits (205), Expect = 1.360e-16
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            + +V +  E  +DLEK   WLG L +  ++  D+ RMKG LS+Q  ++++  QGVH  FE SP ++ W + E+R +K+V IGKSL+R +L+  F+ C
Sbjct:  361 VSSVSIVCEGDLDLEKANMWLGALLYQRSE--DIYRMKGILSVQDMEERFVFQGVHEIFEGSPDRL-WRKDEKRINKIVFIGKSLNREELEMGFKAC 454          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: V4L658_EUTSA (CobW C-terminal domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4L658_EUTSA)

HSP 1 Score: 82.4 bits (202), Expect = 3.440e-16
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            + +V +  E  +DLEK   WLG L +  ++  D+ RMKG LS+Q  ++++  QGVH  FE SP ++ W + E R +K+V IGKSL+R +L+  F+ C
Sbjct:  354 VASVSIVCEGDLDLEKANMWLGALLYQRSE--DIYRMKGILSVQDMEERFVFQGVHEIFEGSPDRL-WRKDETRINKIVFIGKSLNREELEMGFRAC 447          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A068UTZ4_COFCA (CobW C-terminal domain-containing protein n=10 Tax=Coffea TaxID=13442 RepID=A0A068UTZ4_COFCA)

HSP 1 Score: 78.6 bits (192), Expect = 7.710e-15
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            + +V + SE T+DL++V  WL  L     K+ D+ RMKG LS+ G +++Y  QGVH+T +  P +  W  GE+R +KLV IG++L    L+  F+ C
Sbjct:  330 VSSVSIVSEGTLDLDEVDDWLERLL--EEKEDDLYRMKGVLSVTGSEERYVFQGVHSTLDGCPGKT-WGPGEKRVNKLVFIGRNLDETALRKGFKGC 423          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: D8RAB8_SELML (CobW C-terminal domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RAB8_SELML)

HSP 1 Score: 77.0 bits (188), Expect = 2.900e-14
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            + +V +  E  +DLEK+  WLG L   + +  D+ RMKG LSI+   +++  QGVHA +E +  +  W   E+R +KLV IGK+L+ A+L+  F +C
Sbjct:  375 VSSVSIMCEGNLDLEKIDTWLGDLL--DERSEDLYRMKGILSIEDCKERFVFQGVHAVYEGTMDR-EWGPNEKRQNKLVFIGKNLNEAELKQGFMDC 468          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A1Q9PPV8_ALKPS (Cobalamin biosynthesis protein CobW n=1 Tax=Alkalihalophilus pseudofirmus TaxID=79885 RepID=A0A1Q9PPV8_ALKPS)

HSP 1 Score: 76.3 bits (186), Expect = 3.320e-14
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            + ++  T E  +D+ KV RW+  L     K  D++R KG L+I+G  ++   QG+H  F   P +  WSEGE+R ++LV IG++L + +L+  F+EC
Sbjct:  232 VSSIAFTEERPLDMSKVDRWMSYLV--QEKGEDLLRYKGILNIEGMKERIVFQGLHMLFTGKPDK-KWSEGEKRKTELVFIGRNLDKIELENQFREC 325          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A7R9TNW9_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TNW9_9VIRI)

HSP 1 Score: 76.6 bits (187), Expect = 3.770e-14
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   34 MDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            +DL+ +  WL  +    N+  D+ RMKG LSIQ  D+K+  QGVH  FE  P++  W EGE R S+LV IGK L  A+L A F+ C
Sbjct:  348 LDLDAINAWLERMLTERNE--DIFRMKGILSIQDVDEKFVFQGVHQLFEGLPAE-EWGEGEERVSRLVFIGKELDEAELTAEFESC 430          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A7S0YDA2_9CHLO (Hypothetical protein n=2 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YDA2_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 7.490e-14
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            + +V +  +  MD+EK+   LG L     +  D+ RMKG LSIQG ++++  QGVH  FE  P +  W++ E+R  K+V IGK L+R D + AF+ C
Sbjct:  373 VSSVSLVFDGNMDMEKLNYSLGYLL--TERSEDIFRMKGILSIQGREERFVYQGVHQIFEGLPDRY-WNKDEKRQCKMVFIGKYLNREDFEEAFRNC 466          
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Match: A0A485KIV0_9STRA (Aste57867_7876 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KIV0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.320e-13
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKYALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQEC 291
            + + C+T  E ++++ V  WLG L W       + R+KG LS+ GDD+K+ LQGV   F+++PS+  W++ E R +K+V IG  L    LQ+  Q C
Sbjct:  233 VTSTCITCTEILNVKAVEYWLGSLLWEETTMC-IYRIKGILSVSGDDRKHILQGVQDLFDITPSE-KWADEEPRLTKIVFIGIGLDSPALQSGIQGC 327          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119430.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q54TS3_DICDI9.380e-2246.32COBW domain-containing protein n=1 Tax=Dictyosteli... [more]
Q9FUB1_ARATH5.360e-1943.30PRLI-interacting factor L (Fragment) n=1 Tax=Arabi... [more]
A0A565ARE2_9BRAS1.360e-1641.24CobW C-terminal domain-containing protein n=1 Tax=... [more]
V4L658_EUTSA3.440e-1641.24CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A068UTZ4_COFCA7.710e-1540.21CobW C-terminal domain-containing protein n=10 Tax... [more]
D8RAB8_SELML2.900e-1439.18CobW C-terminal domain-containing protein n=4 Tax=... [more]
A0A1Q9PPV8_ALKPS3.320e-1437.11Cobalamin biosynthesis protein CobW n=1 Tax=Alkali... [more]
A0A7R9TNW9_9VIRI3.770e-1446.51Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S0YDA2_9CHLO7.490e-1440.21Hypothetical protein n=2 Tax=Polytomella parva Tax... [more]
A0A485KIV0_9STRA2.320e-1338.14Aste57867_7876 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119430contigM-pyrifera_M_contig119430:6..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog5786.XP_003293752.1
Preferred nameCBWD1
KEGG koko:K12605
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Cobalamin synthesis protein cobW C-terminal domain
EggNOG OGs3XF85@554915,COG0523@1,KOG2743@2759
COG Functional cat.H
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.1585011-CDS-M-pyrifera_M_contig119430:5..3231622815714.1585011-CDS-M-pyrifera_M_contig119430:5..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119430 6..323 +
1692277534.9534981-CDS-M-pyrifera_M_contig119430:5..3231692277534.9534981-CDS-M-pyrifera_M_contig119430:5..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119430 6..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119430.4009.1prot_M-pyrifera_M_contig119430.4009.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119430 6..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119430.4009.1

>prot_M-pyrifera_M_contig119430.4009.1 ID=prot_M-pyrifera_M_contig119430.4009.1|Name=mRNA_M-pyrifera_M_contig119430.4009.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
IGTVCVTSEETMDLEKVTRWLGVLAWGNNKQFDMMRMKGYLSIQGDDKKY
ALQGVHATFELSPSQIAWSEGERRDSKLVLIGKSLHRADLQAAFQECAWV
AAAGE*
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mRNA from alignment at M-pyrifera_M_contig119430:6..323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119430.4009.1 ID=mRNA_M-pyrifera_M_contig119430.4009.1|Name=mRNA_M-pyrifera_M_contig119430.4009.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig119430:6..323+ (Macrocystis pyrifera P11B4 male)
ATTGGAACTGTGTGCGTTACCAGCGAGGAGACCATGGACCTGGAGAAGGT AACCAGGTGGCTGGGAGTGCTCGCATGGGGCAACAACAAGCAGTTCGACA TGATGCGTATGAAGGGCTACCTCAGCATCCAGGGCGACGACAAGAAGTAT GCCCTGCAGGGCGTGCACGCTACCTTCGAGTTGTCTCCCTCTCAGATTGC GTGGAGTGAGGGCGAGCGTAGGGACAGCAAGCTCGTGCTCATTGGCAAGA GTCTGCACCGAGCTGACTTGCAGGCTGCCTTCCAAGAGTGTGCGTGGGTG GCTGCCGCTGGAGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119430:6..323+

>mRNA_M-pyrifera_M_contig119430.4009.1 ID=mRNA_M-pyrifera_M_contig119430.4009.1|Name=mRNA_M-pyrifera_M_contig119430.4009.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig119430:6..323+ (Macrocystis pyrifera P11B4 male)
ATTGGAACTGTGTGCGTTACCAGCGAGGAGACCATGGACCTGGAGAAGGT
AACCAGGTGGCTGGGAGTGCTCGCATGGGGCAACAACAAGCAGTTCGACA
TGATGCGTATGAAGGGCTACCTCAGCATCCAGGGCGACGACAAGAAGTAT
GCCCTGCAGGGCGTGCACGCTACCTTCGAGTTGTCTCCCTCTCAGATTGC
GTGGAGTGAGGGCGAGCGTAGGGACAGCAAGCTCGTGCTCATTGGCAAGA
GTCTGCACCGAGCTGACTTGCAGGCTGCCTTCCAAGAGTGTGCGTGGGTG
GCTGCCGCTGGAGAATGAATTGGAACTGTGTGCGTTACCAGCGAGGAGAC
CATGGACCTGGAGAAGGTAACCAGGTGGCTGGGAGTGCTCGCATGGGGCA
ACAACAAGCAGTTCGACATGATGCGTATGAAGGGCTACCTCAGCATCCAG
GGCGACGACAAGAAGTATGCCCTGCAGGGCGTGCACGCTACCTTCGAGTT
GTCTCCCTCTCAGATTGCGTGGAGTGAGGGCGAGCGTAGGGACAGCAAGC
TCGTGCTCATTGGCAAGAGTCTGCACCGAGCTGACTTGCAGGCTGCCTTC
CAAGAGTGTGCGTGGGTGGCTGCCGCTGGAGAATGA
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