mRNA_M-pyrifera_M_contig119428.4005.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A507BUD7_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BUD7_9FUNG) HSP 1 Score: 55.1 bits (131), Expect = 2.780e-6 Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 4 ASFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFH-LRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
A+F +HFEVV++D SGR+N+A+++S+ L + EA ++ L ++ FEA+FL+ V L+ D L +++ P + LD+ + +S L L + LG R++ + V
Sbjct: 500 ATFEQHFEVVIVDPSGRLNLAAQVSKHGLLQLHHEAKLAIMLFNNSTEDKFEALFLRNVEEGMLKFDMLATITTPATQLPIPRLDDGTDVHSQH----DYLISRLPEVLSQALGSRLQLVTV 617
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A077WVM2_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WVM2_9FUNG) HSP 1 Score: 54.7 bits (130), Expect = 3.790e-6 Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKV-PFHLRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
+F H++VV++D +G VN+A+ +S+++L + EA +M L T FEA+FL+ V LR D ++L P P + D+ + +S+ H+ + L KGL R+ +AV
Sbjct: 446 NFTSHYQVVIVDPTGTVNMAAHMSKSSLDQLQHEAKLAMSYLNDTVD-RFEALFLRNVNEAGLRFDNFVTL--PTPSTTIPSYDDHTKSEYP--IYSEYLAQHIGSVLKKGLTNRVDLVAV 561
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A8H7SG57_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SG57_9FUNG) HSP 1 Score: 54.3 bits (129), Expect = 5.160e-6 Identity = 38/121 (31.40%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLL-ESTDGGSFEAVFLQKV-PFHLRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
F +H+EVVV+D SG +N+A+ ++ + L + EA +M+ +STD FEA+FL+KV + D ++ + PFP + DE + + F++H+ L +GL R+ +A+
Sbjct: 430 FLDHYEVVVVDPSGTLNLAANMTASGLSQLQHEAKLAMQYFNDSTD--QFEALFLKKVNDVKSKFDNVVRI--PFPETKIESFDESAKADYHS--YLPFFINHMSYVLNRGLTNRVDLVAI 544
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A1Y2GZR0_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GZR0_9FUNG) HSP 1 Score: 54.3 bits (129), Expect = 5.180e-6 Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFHL-RHDALISLSPPFPLG 237
F +FEVV++D SG++N+A +S+AAL E EA +M+ FEA+FL++V L R D ++ + P LG
Sbjct: 471 FVSNFEVVIVDPSGKINLAGHISKAALDELQHEARLAMKFFTEPSDDKFEALFLKRVDNPLLRFDNVVKIHAPKNLG 547
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A058Z3H3_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z3H3_FONAL) HSP 1 Score: 53.5 bits (127), Expect = 9.640e-6 Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFHLRHDALISLS 219
F HFE+V+LD+SGR+N+ SR S A + E A EA+ S+++L S+ F ++FL ++ LR+D + L+
Sbjct: 512 FRSHFELVLLDRSGRLNILSRTSLATMLEVAHEAAISLKMLNSSVN-QFASLFLTRLDASLRYDNMFRLA 580
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A0L0HNC0_SPIPD (U3 small nucleolar RNA-associated protein 22 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HNC0_SPIPD) HSP 1 Score: 53.1 bits (126), Expect = 1.310e-5 Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPF-HLRHD 201
SF ++EVV++D SG++N+A+ +SRA L E EA S+ L F A+FL+KV HLR+D
Sbjct: 459 SFTRNYEVVIVDPSGKINLAAAISRATLDEVQYEARRSISLFSDLRDDHFAALFLKKVDLLHLRYD 524
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A4P9W631_9FUNG (U3 small nucleolar RNA-associated protein 22 (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W631_9FUNG) HSP 1 Score: 52.0 bits (123), Expect = 3.250e-5 Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVP-FHLRHDALISLSPP 225
+F +EVV++D +GRVN+A+ LS+AA+ E EA + + D F+A+FL+KV HL+ D + + P
Sbjct: 299 AFKSAYEVVIVDPTGRVNLAAFLSKAAMDELQYEAKVTAQYFSDADADRFDALFLKKVDDVHLKFDNIARIPAP 372
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A197JH38_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JH38_9FUNG) HSP 1 Score: 51.6 bits (122), Expect = 4.510e-5 Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 7 SFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVPFH-LRHDALISLSPP 225
+F +F+VV++D SG++N+A +S+AAL E EA +M+ + FEA+FL++V LR D ++ + P
Sbjct: 368 AFVSNFDVVIVDPSGKINLAGHVSKAALDELQHEARLAMKFFTESSDDKFEALFLKRVDSPILRFDNVVKIHVP 441
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A507EI11_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EI11_9FUNG) HSP 1 Score: 51.6 bits (122), Expect = 4.530e-5 Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKVP-FHLRHD 201
F +EVV++D SG++N+AS LS++++ E EA S L FEA+FL+KV HLR+D
Sbjct: 474 FVAAYEVVIVDPSGKINLASSLSKSSMDELQFEAKRSTELFNDVANDHFEALFLRKVNVLHLRYD 538
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Match: A0A1C7NGT2_9FUNG (U3 small nucleolar RNA-associated protein 22 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NGT2_9FUNG) HSP 1 Score: 50.8 bits (120), Expect = 8.390e-5 Identity = 34/120 (28.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query: 10 FAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGSFEAVFLQKV-PFHLRHDALISLSPPFPLGVLSELDEEVQERLRDRCWSQVFLSHLRTTLIKGLGKRIRSLAV 366
F +H++VVV+D SG +N+ + ++ + L + EA +M ++ F+A+FL+KV F ++D ++++ P L+ L + + FL L LI+GL R++ +AV
Sbjct: 436 FKQHYDVVVVDPSGMLNLTADMTASGLAQVQHEAKLAMSYFNDSND-QFDALFLKKVNDFRFKYDNVLTI----PSSALNGLAMSEEAKADYHSCLPYFLQRLADILIRGLTNRVKLIAV 550 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119428.4005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig119428.4005.1 >prot_M-pyrifera_M_contig119428.4005.1 ID=prot_M-pyrifera_M_contig119428.4005.1|Name=mRNA_M-pyrifera_M_contig119428.4005.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp LASFAEHFEVVVLDQSGRVNVASRLSRAALQEAAAEASTSMRLLESTDGGback to top mRNA from alignment at M-pyrifera_M_contig119428:177..542+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig119428.4005.1 ID=mRNA_M-pyrifera_M_contig119428.4005.1|Name=mRNA_M-pyrifera_M_contig119428.4005.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig119428:177..542+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig119428:177..542+ >mRNA_M-pyrifera_M_contig119428.4005.1 ID=mRNA_M-pyrifera_M_contig119428.4005.1|Name=mRNA_M-pyrifera_M_contig119428.4005.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig119428:177..542+ (Macrocystis pyrifera P11B4 male)back to top |