mRNA_M-pyrifera_M_contig119390.4001.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119390.4001.1
Unique NamemRNA_M-pyrifera_M_contig119390.4001.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: D7FNI3_ECTSI (Clathrin assembly complex, medium subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI3_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.500e-33
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYCNP 162
            VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMN+TPPVYCNP
Sbjct:  228 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNVTPPVYCNP 281
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: B7FSR7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR7_PHATC)

HSP 1 Score: 96.7 bits (239), Expect = 2.600e-22
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYCNP 162
            +IDDCSFHPCVRY RFE D+VVSFVPPDG+FELMRYR+      N +PPVYC+P
Sbjct:  222 LIDDCSFHPCVRYARFENDKVVSFVPPDGNFELMRYRIHPERARNFSPPVYCHP 275
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: A0A7S2GAE1_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GAE1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.700e-21
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYC 156
            VIDDCSFHPCVRY RFE+DRVVSFVPPDG FELMRYRV  + + N++ P+YC
Sbjct:   31 VIDDCSFHPCVRYNRFERDRVVSFVPPDGAFELMRYRV--NTKANVSAPIYC 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: A0A835YUG2_9STRA (Mu homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.230e-21
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRD---HL--QMNITPPVYCN 159
            +IDDCSFHPCVRYGRFE+DRVVSFVPPDG FELMRYRV     H+  + NI PP+YCN
Sbjct:  228 LIDDCSFHPCVRYGRFERDRVVSFVPPDGAFELMRYRVATGAHHILPRGNIIPPLYCN 285
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: A0A7S3P8V0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P8V0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.340e-21
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYCN 159
            +IDDCSFHPCVRY RFE+D+V+SFVPPDG+FELMRYR+      N  PP+YC+
Sbjct:   56 LIDDCSFHPCVRYARFEQDQVISFVPPDGNFELMRYRIHADQARNFCPPLYCH 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: I2CP32_NANGC (AP-3 complex subunit mu n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP32_NANGC)

HSP 1 Score: 92.4 bits (228), Expect = 1.010e-20
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYC 156
            VIDDCSFHPCVRY RFE+DR VSFVPPDGHFELMRYRV    +  + PP+YC
Sbjct:  228 VIDDCSFHPCVRYNRFERDRTVSFVPPDGHFELMRYRVTP--RQTLVPPIYC 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: W4FFE6_9STRA (MHD domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FFE6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.580e-20
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMN-ITPPVYCNP 162
            VIDDCSFHPCVRY R+E++RV+SFVPPDGHFELM+YRV    Q+N + PP++C P
Sbjct:  227 VIDDCSFHPCVRYARYERERVISFVPPDGHFELMQYRV----QVNQVVPPIFCQP 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: A0A7S2KC76_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KC76_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.840e-20
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYCNP 162
            VIDDCSFHPCVRY R+E DRV+SFVP DG+FELMRYRVR+  Q+ + PP++C P
Sbjct:  240 VIDDCSFHPCVRYNRYEHDRVISFVPADGNFELMRYRVRNGSQL-VNPPIFCTP 292
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: A0A7S4QJD2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJD2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.130e-20
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYCNP 162
            +IDDCSFHPCVRYGR+E D+VVSFVPPDG+FELM+YRVR+      +PP+ C P
Sbjct:  253 LIDDCSFHPCVRYGRYEMDKVVSFVPPDGNFELMKYRVRNAAAKMFSPPLQCTP 306
[Close]
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Match: A0A812RSH5_SYMMI (AP3M1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RSH5_SYMMI)

HSP 1 Score: 88.6 bits (218), Expect = 3.500e-20
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPVYCNP 162
            V+DDCSFHPCVRY R++KD+VVSFVPPDG FELMRYRV       I PP +C P
Sbjct:  111 VLDDCSFHPCVRYKRYDKDKVVSFVPPDGQFELMRYRVNRPGSSPIVPPCFCQP 164
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119390.4001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNI3_ECTSI5.500e-3398.15Clathrin assembly complex, medium subunit n=1 Tax=... [more]
B7FSR7_PHATC2.600e-2272.22Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2GAE1_9STRA4.700e-2175.00Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A835YUG2_9STRA8.230e-2174.14Mu homology domain-containing protein n=1 Tax=Trib... [more]
A0A7S3P8V0_9STRA8.340e-2167.92Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
I2CP32_NANGC1.010e-2075.00AP-3 complex subunit mu n=1 Tax=Nannochloropsis ga... [more]
W4FFE6_9STRA2.580e-2069.09MHD domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2KC76_9STRA2.840e-2070.37Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4QJD2_9STRA3.130e-2068.52Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A812RSH5_SYMMI3.500e-2068.52AP3M1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119390contigM-pyrifera_M_contig119390:166..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue7.2e-27
Seed eggNOG ortholog2880.D7FNI3
Preferred nameAP3M2
KEGG koko:K12398,ko:K17969
KEGG Pathwayko04137,ko04139,ko04142,map04137,map04139,map04142
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000323,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006897,GO:0006907,GO:0006928,GO:0006950,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0008565,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010876,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0019915,GO:0030117,GO:0030119,GO:0030123,GO:0030705,GO:0031201,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033060,GO:0033365,GO:0033554,GO:0034613,GO:0042440,GO:0042441,GO:0042594,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046903,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048475,GO:0048489,GO:0048490,GO:0048856,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0061462,GO:0065007,GO:0065008,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098657,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901564,GO:1901576
EggNOG free text desc.anterograde synaptic vesicle transport
EggNOG OGsKOG2740@1,KOG2740@2759
Ec32 ortholog descriptionClathrin assembly complex, medium subunit
Ec32 orthologEc-01_005340.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.7687142-CDS-M-pyrifera_M_contig119390:165..3271622815713.7687142-CDS-M-pyrifera_M_contig119390:165..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119390 166..327 +
1692277534.7508256-CDS-M-pyrifera_M_contig119390:165..3271692277534.7508256-CDS-M-pyrifera_M_contig119390:165..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119390 166..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119390.4001.1prot_M-pyrifera_M_contig119390.4001.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119390 166..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119390.4001.1

>prot_M-pyrifera_M_contig119390.4001.1 ID=prot_M-pyrifera_M_contig119390.4001.1|Name=mRNA_M-pyrifera_M_contig119390.4001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
VIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNITPPV
YCNP
back to top

mRNA from alignment at M-pyrifera_M_contig119390:166..327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119390.4001.1 ID=mRNA_M-pyrifera_M_contig119390.4001.1|Name=mRNA_M-pyrifera_M_contig119390.4001.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig119390:166..327+ (Macrocystis pyrifera P11B4 male)
GTCATCGACGACTGCTCGTTCCACCCGTGCGTGCGATACGGTCGGTTCGA
GAAGGACAGGGTCGTGAGCTTCGTGCCTCCCGACGGGCACTTCGAGCTCA
TGCGTTATCGCGTTCGAGATCACCTGCAAATGAACATCACGCCGCCTGTG
TACTGCAACCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig119390:166..327+

>mRNA_M-pyrifera_M_contig119390.4001.1 ID=mRNA_M-pyrifera_M_contig119390.4001.1|Name=mRNA_M-pyrifera_M_contig119390.4001.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig119390:166..327+ (Macrocystis pyrifera P11B4 male)
GTCATCGACGACTGCTCGTTCCACCCGTGCGTGCGATACGGTCGGTTCGA
GAAGGACAGGGTCGTGAGCTTCGTGCCTCCCGACGGGCACTTCGAGCTCA
TGCGTTATCGCGTTCGAGATCACCTGCAAATGAACATCACGCCGCCTGTG
TACTGCAACCCCGTCATCGACGACTGCTCGTTCCACCCGTGCGTGCGATA
CGGTCGGTTCGAGAAGGACAGGGTCGTGAGCTTCGTGCCTCCCGACGGGC
ACTTCGAGCTCATGCGTTATCGCGTTCGAGATCACCTGCAAATGAACATC
ACGCCGCCTGTGTACTGCAACCCC
back to top