mRNA_M-pyrifera_M_contig119363.3996.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119363.3996.1
Unique NamemRNA_M-pyrifera_M_contig119363.3996.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A1Y0CW73_9GAMM (Uncharacterized protein n=1 Tax=Oceanisphaera avium TaxID=1903694 RepID=A0A1Y0CW73_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 1.700e-10
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDYHLKHIP 249
            ALN  + T+ LE  RR    AI + +HPGTVATS +APFRA + K  L TP+QAAS +  +M +     HSGK + +  + IP
Sbjct:  153 ALNMAIKTIALEWQRRFP-QAIMVGLHPGTVATSLSAPFRAGLAKGQLHTPEQAASHLIAVM-NSLTTAHSGKIWAWDGQEIP 233          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A850GWJ7_9SPHN (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Actirhodobacter atriluteus TaxID=2744473 RepID=A0A850GWJ7_9SPHN)

HSP 1 Score: 58.9 bits (141), Expect = 1.950e-8
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDYHLKHIP 249
            ALN ++    +E+ R  K HAIA+A+HPGTV TS + PF+A++P   L  P +AA  + +++     +  SGK FD+  K +P
Sbjct:  166 ALNMLVRNFAIELGRTHK-HAIAVALHPGTVDTSLSEPFQANVPDEQLFAPARAARQLFDVIDGLGTED-SGKHFDWQGKPVP 246          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A3T0EDI5_9PROT (Short-chain dehydrogenase/reductase SDR n=1 Tax=Glycocaulis alkaliphilus TaxID=1434191 RepID=A0A3T0EDI5_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 2.720e-8
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDY 231
            ALN ++ T ++E+AR+ +  A+ + +HPGTV T+ + PFR ++P   L TP+ +A  + ++ +      HSG+CFD+
Sbjct:  167 ALNQIIRTCSIELARK-RPEALIVGLHPGTVETALSEPFRRNVPDAKLFTPEHSAGRLLKV-IDTLTPDHSGRCFDF 241          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A844XNA9_9SPHN (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Qipengyuania vulgaris TaxID=291985 RepID=A0A844XNA9_9SPHN)

HSP 1 Score: 57.4 bits (137), Expect = 6.050e-8
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDY 231
            ALN ++ TL++E+AR+ K  A  +A+HPGTV T+ + PFR ++P   L TP  +A  +  + L       SG+CFD+
Sbjct:  145 ALNMIIRTLSVELARK-KPDAFCVALHPGTVETNLSQPFRRNVPDGKLFTPAYSAEKLLGV-LSSLRPEQSGRCFDW 219          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A086MHS9_9HYPH (Uncharacterized protein n=2 Tax=Microvirga sp. BSC39 TaxID=1549810 RepID=A0A086MHS9_9HYPH)

HSP 1 Score: 57.4 bits (137), Expect = 7.040e-8
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDYHLKHIPF 252
            ALN +M TL +E+ RR K  AI +A+HPGTV T+ + PFR  +    L TP  AA  +  + L+      SG  F +  +HIPF
Sbjct:  163 ALNQLMRTLAVEL-RRQKPDAICVALHPGTVDTALSQPFRTGVESGKLFTPAYAAERLLTV-LNGLTAADSGGFFAWDGQHIPF 244          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A1I0GCR1_9PROT (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=2 Tax=Nitrosomonas marina TaxID=917 RepID=A0A1I0GCR1_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-7
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDY 231
            ALN ++    +E+ RR K HAI + +HPGTV ++ + PFR+ +P+  L TP  A   +  ++ + + Q  SGKCFD+
Sbjct:  159 ALNMIIKNAAIEMGRRYK-HAIIVGLHPGTVDSNLSKPFRSRVPEGKLFTPDFAVKKLVSVIENLSPQD-SGKCFDW 233          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: UPI000A64957F (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Croceicoccus mobilis TaxID=1703339 RepID=UPI000A64957F)

HSP 1 Score: 56.6 bits (135), Expect = 1.310e-7
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDYHLKHIPF 252
            ALN ++    +E+ RR+K  A+A+A+HPGTV T+ + PFR ++P   L TP+ AA+ +  + +   +   SG  F +  K IPF
Sbjct:  159 ALNQIIRNFAIELRRRNK-RAVAVALHPGTVETTLSEPFRGNVPDEKLFTPEYAAACLLSV-IDGLSAGDSGGFFAWDGKPIPF 240          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A2D6TV41_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D6TV41_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.380e-7
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDYHLKHIP 249
            ALN V+ TL++E+AR  K + + + +HPGTV TS +AP   +I +H + TP QAA  +  + ++ A    SG C DY  K IP
Sbjct:  167 ALNMVIKTLSIEVARTHK-NTLVVGLHPGTVDTSLSAPHSKNI-QHEIFTPDQAAGYLLNV-INTAPIDQSGGCLDYSGKVIP 246          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A2S6UQ21_9PROT (C-factor n=1 Tax=Alphaproteobacteria bacterium MarineAlpha2_Bin1 TaxID=2013066 RepID=A0A2S6UQ21_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 2.480e-7
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDYHLKHIPF 252
            ALN ++  +++E+ RR+K  +I +A+HPGTV T+ + PF+       +R+P  AAS+I ++ L   +++H+GK  DY  K I F
Sbjct:  159 ALNQLVRCMSIELNRRNKD-SICVAMHPGTVDTNLSKPFKKK--GLNVRSPNIAASEILDV-LSSLDESHNGKFLDYKFKEIAF 238          
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Match: A0A0P1GRA6_9RHOB (C signal n=1 Tax=Tritonibacter multivorans TaxID=928856 RepID=A0A0P1GRA6_9RHOB)

HSP 1 Score: 55.5 bits (132), Expect = 3.440e-7
Identity = 29/84 (34.52%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 ALNSVMPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAASDIAEIMLHKANQTHSGKCFDYHLKHIPF 252
            ALN ++    +E+ R +   +I + +HPGTV T  +APFR ++   TL+ P Q+A+ +  + +   ++ H+G+ FD+  K IPF
Sbjct:  157 ALNMLLRCYAIEMTRWNP-QSICVGLHPGTVKTDLSAPFRGNVTADTLQEPAQSAAHLKSV-IDSLSEDHTGQMFDWAGKPIPF 238          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119363.3996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y0CW73_9GAMM1.700e-1045.78Uncharacterized protein n=1 Tax=Oceanisphaera aviu... [more]
A0A850GWJ7_9SPHN1.950e-839.76SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A3T0EDI5_9PROT2.720e-836.36Short-chain dehydrogenase/reductase SDR n=1 Tax=Gl... [more]
A0A844XNA9_9SPHN6.050e-840.26SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A086MHS9_9HYPH7.040e-841.67Uncharacterized protein n=2 Tax=Microvirga sp. BSC... [more]
A0A1I0GCR1_9PROT1.310e-738.96NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]
UPI000A64957F1.310e-738.10SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2D6TV41_9PROT1.380e-742.17Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2S6UQ21_9PROT2.480e-738.10C-factor n=1 Tax=Alphaproteobacteria bacterium Mar... [more]
A0A0P1GRA6_9RHOB3.440e-734.52C signal n=1 Tax=Tritonibacter multivorans TaxID=9... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119363contigM-pyrifera_M_contig119363:2..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size240
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.5268598-UTR-M-pyrifera_M_contig119363:1..161622815713.5268598-UTR-M-pyrifera_M_contig119363:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119363 2..16 +
1692277534.6315138-UTR-M-pyrifera_M_contig119363:1..161692277534.6315138-UTR-M-pyrifera_M_contig119363:1..16Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119363 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.5373282-CDS-M-pyrifera_M_contig119363:16..2561622815713.5373282-CDS-M-pyrifera_M_contig119363:16..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119363 17..256 +
1692277534.6400402-CDS-M-pyrifera_M_contig119363:16..2561692277534.6400402-CDS-M-pyrifera_M_contig119363:16..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119363 17..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119363.3996.1prot_M-pyrifera_M_contig119363.3996.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119363 17..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119363.3996.1

>prot_M-pyrifera_M_contig119363.3996.1 ID=prot_M-pyrifera_M_contig119363.3996.1|Name=mRNA_M-pyrifera_M_contig119363.3996.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MPTLTLEIARRSKGHAIAIAIHPGTVATSFTAPFRASIPKHTLRTPKQAA
SDIAEIMLHKANQTHSGKCFDYHLKHIPF*
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mRNA from alignment at M-pyrifera_M_contig119363:2..256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119363.3996.1 ID=mRNA_M-pyrifera_M_contig119363.3996.1|Name=mRNA_M-pyrifera_M_contig119363.3996.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig119363:2..256+ (Macrocystis pyrifera P11B4 male)
GCGCTCAATTCTGTGATGCCGACGTTAACCCTCGAAATTGCCCGCCGCAG CAAGGGACACGCCATCGCCATCGCCATCCACCCCGGCACCGTCGCCACAT CATTCACAGCACCCTTCCGCGCGTCCATCCCGAAACACACCCTGCGGACC CCAAAACAAGCCGCGTCCGACATCGCCGAAATCATGCTCCACAAAGCCAA CCAAACACACTCTGGAAAGTGCTTCGACTACCACCTAAAACACATACCCT TCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119363:2..256+

>mRNA_M-pyrifera_M_contig119363.3996.1 ID=mRNA_M-pyrifera_M_contig119363.3996.1|Name=mRNA_M-pyrifera_M_contig119363.3996.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig119363:2..256+ (Macrocystis pyrifera P11B4 male)
ATGCCGACGTTAACCCTCGAAATTGCCCGCCGCAGCAAGGGACACGCCAT
CGCCATCGCCATCCACCCCGGCACCGTCGCCACATCATTCACAGCACCCT
TCCGCGCGTCCATCCCGAAACACACCCTGCGGACCCCAAAACAAGCCGCG
TCCGACATCGCCGAAATCATGCTCCACAAAGCCAACCAAACACACTCTGG
AAAGTGCTTCGACTACCACCTAAAACACATACCCTTCTAAATGCCGACGT
TAACCCTCGAAATTGCCCGCCGCAGCAAGGGACACGCCATCGCCATCGCC
ATCCACCCCGGCACCGTCGCCACATCATTCACAGCACCCTTCCGCGCGTC
CATCCCGAAACACACCCTGCGGACCCCAAAACAAGCCGCGTCCGACATCG
CCGAAATCATGCTCCACAAAGCCAACCAAACACACTCTGGAAAGTGCTTC
GACTACCACCTAAAACACATACCCTTCTAA
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