mRNA_M-pyrifera_M_contig119350.3991.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119350.3991.1
Unique NamemRNA_M-pyrifera_M_contig119350.3991.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119350.3991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119350contigM-pyrifera_M_contig119350:155..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.7
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog278957.ABEA03000091_gene698
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pectate lyase superfamily protein
EggNOG OGs46VA8@74201,COG5434@1,COG5434@2
COG Functional cat.M
Best tax levelVerrucomicrobia
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.3427243-CDS-M-pyrifera_M_contig119350:154..5411622815713.3427243-CDS-M-pyrifera_M_contig119350:154..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119350 155..541 -
1692277534.5613568-CDS-M-pyrifera_M_contig119350:154..5411692277534.5613568-CDS-M-pyrifera_M_contig119350:154..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119350 155..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119350.3991.1prot_M-pyrifera_M_contig119350.3991.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119350 155..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119350.3991.1

>prot_M-pyrifera_M_contig119350.3991.1 ID=prot_M-pyrifera_M_contig119350.3991.1|Name=mRNA_M-pyrifera_M_contig119350.3991.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MASAEMVFQNCLFTHGAAGIAPLAANDYDNRVTGCLFFRLRIALLSHLGN
FYLSDSRFQESAQLDIQAPVHALSVRRVVSVGSAQFLDASGGEIGASMVL
SELLVHNWSAPAAITSSLPGPFQLLDATF
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mRNA from alignment at M-pyrifera_M_contig119350:155..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119350.3991.1 ID=mRNA_M-pyrifera_M_contig119350.3991.1|Name=mRNA_M-pyrifera_M_contig119350.3991.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig119350:155..541- (Macrocystis pyrifera P11B4 male)
ATGGCGTCTGCCGAAATGGTGTTCCAGAACTGCCTCTTCACGCACGGCGC
GGCGGGCATCGCCCCGCTGGCGGCCAACGACTACGACAACCGCGTCACGG
GCTGCCTCTTCTTCCGCCTGCGCATCGCGCTGCTCTCGCACCTCGGCAAC
TTTTACCTCTCCGACTCGAGGTTCCAGGAGTCGGCCCAGCTCGACATCCA
GGCCCCCGTGCACGCCCTCAGCGTGCGCCGCGTCGTCTCGGTGGGCTCCG
CCCAGTTCCTCGATGCCTCGGGAGGGGAAATCGGGGCCTCGATGGTCCTC
TCCGAACTCCTGGTGCACAACTGGAGCGCGCCGGCCGCCATCACCTCCTC
CCTCCCCGGACCCTTCCAGCTCCTCGACGCCACATTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119350:155..541-

>mRNA_M-pyrifera_M_contig119350.3991.1 ID=mRNA_M-pyrifera_M_contig119350.3991.1|Name=mRNA_M-pyrifera_M_contig119350.3991.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig119350:155..541- (Macrocystis pyrifera P11B4 male)
ATGGCGTCTGCCGAAATGGTGTTCCAGAACTGCCTCTTCACGCACGGCGC
GGCGGGCATCGCCCCGCTGGCGGCCAACGACTACGACAACCGCGTCACGG
GCTGCCTCTTCTTCCGCCTGCGCATCGCGCTGCTCTCGCACCTCGGCAAC
TTTTACCTCTCCGACTCGAGGTTCCAGGAGTCGGCCCAGCTCGACATCCA
GGCCCCCGTGCACGCCCTCAGCGTGCGCCGCGTCGTCTCGGTGGGCTCCG
CCCAGTTCCTCGATGCCTCGGGAGGGGAAATCGGGGCCTCGATGGTCCTC
TCCGAACTCCTGGTGCACAACTGGAGCGCGCCGGCCGCCATCACCTCCTC
CCTCCCCGGACCCTTCCAGCTCCTCGACGCCACATTCATGGCGTCTGCCG
AAATGGTGTTCCAGAACTGCCTCTTCACGCACGGCGCGGCGGGCATCGCC
CCGCTGGCGGCCAACGACTACGACAACCGCGTCACGGGCTGCCTCTTCTT
CCGCCTGCGCATCGCGCTGCTCTCGCACCTCGGCAACTTTTACCTCTCCG
ACTCGAGGTTCCAGGAGTCGGCCCAGCTCGACATCCAGGCCCCCGTGCAC
GCCCTCAGCGTGCGCCGCGTCGTCTCGGTGGGCTCCGCCCAGTTCCTCGA
TGCCTCGGGAGGGGAAATCGGGGCCTCGATGGTCCTCTCCGAACTCCTGG
TGCACAACTGGAGCGCGCCGGCCGCCATCACCTCCTCCCTCCCCGGACCC
TTCCAGCTCCTCGACGCCACATTC
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