mRNA_M-pyrifera_M_contig119322.3983.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119322.3983.1
Unique NamemRNA_M-pyrifera_M_contig119322.3983.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A3M2GU96_ACTSX (DUF58 domain-containing protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GU96_ACTSX)

HSP 1 Score: 137 bits (345), Expect = 3.650e-37
Identity = 80/128 (62.50%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLLGAPWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRKRSR 384
            GL RLA P HR GLAVV+SDLL   W D LRAVT RHETLV+E+VD  ELELP+VG + + DA TG    V T R A R+RFA AA  RLA H    R A ADHL+LRTD DWV+ LA FVDRR+R R
Sbjct:  164 GLARLAAPVHRAGLAVVVSDLLTDDWADPLRAVTRRHETLVVEIVDPLELELPDVGPLTVIDAETGEHRRVRTSRRA-RERFAQAARRRLAAHRDACRRAGADHLVLRTDDDWVVRLAHFVDRRRRGR 290          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A6I3C431_9ACTN (DUF58 domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A6I3C431_9ACTN)

HSP 1 Score: 126 bits (317), Expect = 5.540e-33
Identity = 73/128 (57.03%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLLG-APWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVD-RRKR 378
            G+RRL  P HR GLAVV+SDLL  A W   L  V +RH+ LVIEV+D RELELP+VG + L D  TGR+ EV+TR A  R R+A+AA  +   +AR VR A ADHL+LRTD DW+ D+ +FV  RRKR
Sbjct:  166 GIRRLLSPAHRRGLAVVVSDLLAPAGWDRELARVAVRHDVLVIEVIDPRELELPDVGTLALVDPETGRLREVNTRSAKLRSRYAEAAHEQREANARAVRGAGADHLVLRTDSDWLFDVIRFVVLRRKR 293          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A7K1A562_9ACTN (DUF58 domain-containing protein n=10 Tax=root TaxID=1 RepID=A0A7K1A562_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 1.510e-32
Identity = 72/126 (57.14%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLLG-APWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRK 375
            GLRR+AG   R GL VVISD L   PW  ALR + LRH+ L IEVVD  EL LP+VG++ L D  TGR +EV T  A  R+R+A AA  + A  A  +RA  ADHL+LRTDRDW+LDLA+FV RR+
Sbjct:  159 GLRRIAGTAKRRGLIVVISDFLDPGPWDAALRTLALRHDVLCIEVVDPVELALPDVGMLLLHDTVTGREIEVPTGNAKFRERYAQAAADQRAAIATRIRATSADHLVLRTDRDWLLDLARFVSRRR 284          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A7Y2DEZ0_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DEZ0_9ACTN)

HSP 1 Score: 123 bits (309), Expect = 2.120e-31
Identity = 69/127 (54.33%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLLGA-PWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRKR 378
            G+RRL     R GL VVISD +   PW + LR ++LRHE L IEVVD RELELPNVGLI L D  TGR  +++T R A R+ +A AA+T+  + A  +R A A HL L TDRDWVLDL +FV  R++
Sbjct:  210 GIRRLTKSARRAGLMVVISDFMSTEPWPEELRRLSLRHEVLAIEVVDPRELELPNVGLITLRDPETGRTRDINTGRPAVREAYAAAASTQRTEIANRMREAGASHLQLSTDRDWVLDLVRFVALRRK 336          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A522B350_9ACTN (DUF58 domain-containing protein n=1 Tax=Frankiales bacterium TaxID=1909291 RepID=A0A522B350_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 3.510e-30
Identity = 69/135 (51.11%), Postives = 87/135 (64.44%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLLGA-------PWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRKRSR 384
            GLR +A P  R GL VV+SDLL          W   LR +T RH+ +V EVVD RELELP+VG++ L D  TGR +EV T     R+R+A+AA  R A HA  VR A A H+LLRTD DW+L LA+F+  R+R+R
Sbjct:  174 GLRAVANPPRRRGLVVVVSDLLEPGPVMAEPTWAAPLRQLTRRHDVVVAEVVDPRELELPSVGVLRLVDPETGRHLEVQTAGRRLRERYAEAAAARRAGHATAVRGAGAGHVLLRTDTDWLLSLARFLAARRRTR 308          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: UPI001D1019DA (DUF58 domain-containing protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D1019DA)

HSP 1 Score: 117 bits (294), Expect = 1.880e-29
Identity = 70/134 (52.24%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    4 LRRLAGPGHRGGLAVVISDLLGAP--WTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRKRSRRVAST 399
            L+R      R GL VV+SD L  P  W  AL  V LRH+ L IEVVD RELELP VGL++ +D  TG   EV+T    TR R+A+AA  + A  A  +R A ADHL LRTD DWVLDLA++V RR+R   +A+T
Sbjct:  177 LKRAGAIAPRRGLVVVLSDFLEDPEQWRTALGTVALRHQVLCIEVVDPRELELPPVGLVQFSDPATGGTREVNTNDPGTRARYAEAAGRQRATIASAIRGAGADHLQLRTDGDWVLDLARYVSRRRRRAELAAT 310          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A7W0K6F6_9ACTN (DUF58 domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0K6F6_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 3.740e-29
Identity = 63/122 (51.64%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLLG-APWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFV 363
            G+  L  P  R GLAVVISD L  A W   LRA+ LRH+ L +E+VD RELELPNVG + + D  TGR +EV T +A+ R+R+A+AA       A  +R + A HL LRTDRDWV D+  FV
Sbjct:   12 GIAHLVRPPQRRGLAVVISDFLAPAGWETPLRALALRHQVLAVEIVDPRELELPNVGYLAMVDPETGRRLEVPTGKASLRRRYAEAAAAERTAIATAIRRSGAQHLQLRTDRDWVRDVVAFV 133          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A538FDD1_9ACTN (DUF58 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538FDD1_9ACTN)

HSP 1 Score: 115 bits (289), Expect = 1.010e-28
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLL-GAPWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRKRSR 384
            G+R L  P  R GLAVV+SD L  +PW  ALR +  RH+ L +E++D RELELP+VG + L D  TGR  +V T  A  R R+  AA  + A +A  +R A A HL+LRTDRDW+LD+ +FV R +R+R
Sbjct:  174 GIRGLLRPPRRRGLAVVVSDFLCPSPWPRALRLLAARHQVLAVEIIDPRELELPSVGYLTLVDLETGRQRDVQTSSAGLRARYGAAAAAQRAANAAAMRRAGAGHLVLRTDRDWILDVVEFVARARRTR 302          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A7W1LI84_9ACTN (DUF58 domain-containing protein n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W1LI84_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 2.430e-28
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    4 LRRLAGPGHRGGLAVVISDLLG-APWTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRK 375
            L  L  P  R GL VVISD LG   W   LR +  RH+ L IEV+D RELELP+VGL+ + D  +G+ +EV T+RA  R+RFA AA  + A+ A  +R A A HL LRTDR+W+LD+ ++V  R+
Sbjct:    2 LEMLRRPPRRRGLVVVISDFLGDMSWQRPLRGLGARHDVLAIEVLDPRELELPDVGLVTMVDPESGQTIEVPTQRADVRERFALAAAQQRAEIAAALRRAGAGHLTLRTDREWLLDIVRYVANRR 126          
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Match: A0A6L6EUW8_9ACTN (DUF58 domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A6L6EUW8_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 2.810e-28
Identity = 61/126 (48.41%), Postives = 86/126 (68.25%), Query Frame = 1
Query:    1 GLRRLAGPGHRGGLAVVISDLLGAP-WTDALRAVTLRHETLVIEVVDRRELELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAARADHLLLRTDRDWVLDLAKFVDRRK 375
            GLRRLA    R GL V++SD LG   W+ ++R++ LRH+ L +EV+D  E+ LP+VG++ + D  TG  +++ T  A  RQ++ADAA  + A  A ++R A ADHL LRTDRDW+LDLA FV  R+
Sbjct:  177 GLRRLAATAKRRGLIVIVSDFLGPDDWSHSMRSLALRHDVLCVEVLDPLEVALPDVGMLTVRDVATGAELDIPTGNAKLRQQYADAAAAQRAAIANNIRRAGADHLQLRTDRDWLLDLASFVSGRR 302          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119322.3983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M2GU96_ACTSX3.650e-3762.50DUF58 domain-containing protein n=1 Tax=Actinomyce... [more]
A0A6I3C431_9ACTN5.540e-3357.03DUF58 domain-containing protein n=3 Tax=root TaxID... [more]
A0A7K1A562_9ACTN1.510e-3257.14DUF58 domain-containing protein n=10 Tax=root TaxI... [more]
A0A7Y2DEZ0_9ACTN2.120e-3154.33DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
A0A522B350_9ACTN3.510e-3051.11DUF58 domain-containing protein n=1 Tax=Frankiales... [more]
UPI001D1019DA1.880e-2952.24DUF58 domain-containing protein n=1 Tax=Aquihabita... [more]
A0A7W0K6F6_9ACTN3.740e-2951.64DUF58 domain-containing protein n=1 Tax=Acidimicro... [more]
A0A538FDD1_9ACTN1.010e-2849.61DUF58 domain-containing protein n=1 Tax=Actinomyce... [more]
A0A7W1LI84_9ACTN2.430e-2849.60DUF58 domain-containing protein n=1 Tax=Geodermato... [more]
A0A6L6EUW8_9ACTN2.810e-2848.41DUF58 domain-containing protein n=3 Tax=root TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119322contigM-pyrifera_M_contig119322:131..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.8
Seed ortholog evalue1e-21
Seed eggNOG ortholog1120949.KB903294_gene4694
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0008150,GO:0016020,GO:0040007,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
EggNOG OGs2GKSJ@201174,4DAA9@85008,COG1721@1,COG1721@2
COG Functional cat.S
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.0404372-CDS-M-pyrifera_M_contig119322:130..5411622815713.0404372-CDS-M-pyrifera_M_contig119322:130..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119322 131..541 -
1692277534.4413588-CDS-M-pyrifera_M_contig119322:130..5411692277534.4413588-CDS-M-pyrifera_M_contig119322:130..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119322 131..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119322.3983.1prot_M-pyrifera_M_contig119322.3983.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119322 131..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119322.3983.1

>prot_M-pyrifera_M_contig119322.3983.1 ID=prot_M-pyrifera_M_contig119322.3983.1|Name=mRNA_M-pyrifera_M_contig119322.3983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
GLRRLAGPGHRGGLAVVISDLLGAPWTDALRAVTLRHETLVIEVVDRREL
ELPNVGLIELADARTGRVVEVDTRRAATRQRFADAATTRLADHARDVRAA
RADHLLLRTDRDWVLDLAKFVDRRKRSRRVASTVVA*
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mRNA from alignment at M-pyrifera_M_contig119322:131..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119322.3983.1 ID=mRNA_M-pyrifera_M_contig119322.3983.1|Name=mRNA_M-pyrifera_M_contig119322.3983.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig119322:131..541- (Macrocystis pyrifera P11B4 male)
GGTCTTCGCCGGCTGGCCGGACCAGGCCATCGCGGCGGGCTCGCCGTCGT GATCTCCGATCTGCTCGGGGCGCCGTGGACTGATGCGCTACGCGCCGTCA CGCTCCGCCACGAGACGCTCGTCATCGAGGTCGTCGATCGCCGCGAGCTG GAGCTTCCCAATGTCGGGCTGATCGAGCTGGCCGACGCTCGCACCGGGCG GGTCGTCGAGGTCGACACCCGCCGCGCCGCGACCCGGCAGCGCTTCGCCG ACGCGGCCACGACACGCCTGGCCGACCACGCTCGTGATGTGCGGGCCGCC CGAGCTGACCATCTTCTCCTGCGTACCGATCGCGACTGGGTGCTCGATCT GGCCAAGTTCGTCGATCGGCGCAAGCGCAGTCGCCGGGTCGCCTCGACGG TGGTCGCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119322:131..541-

>mRNA_M-pyrifera_M_contig119322.3983.1 ID=mRNA_M-pyrifera_M_contig119322.3983.1|Name=mRNA_M-pyrifera_M_contig119322.3983.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig119322:131..541- (Macrocystis pyrifera P11B4 male)
GGTCTTCGCCGGCTGGCCGGACCAGGCCATCGCGGCGGGCTCGCCGTCGT
GATCTCCGATCTGCTCGGGGCGCCGTGGACTGATGCGCTACGCGCCGTCA
CGCTCCGCCACGAGACGCTCGTCATCGAGGTCGTCGATCGCCGCGAGCTG
GAGCTTCCCAATGTCGGGCTGATCGAGCTGGCCGACGCTCGCACCGGGCG
GGTCGTCGAGGTCGACACCCGCCGCGCCGCGACCCGGCAGCGCTTCGCCG
ACGCGGCCACGACACGCCTGGCCGACCACGCTCGTGATGTGCGGGCCGCC
CGAGCTGACCATCTTCTCCTGCGTACCGATCGCGACTGGGTGCTCGATCT
GGCCAAGTTCGTCGATCGGCGCAAGCGCAGTCGCCGGGTCGCCTCGACGG
TGGTCGCATGAGGTCTTCGCCGGCTGGCCGGACCAGGCCATCGCGGCGGG
CTCGCCGTCGTGATCTCCGATCTGCTCGGGGCGCCGTGGACTGATGCGCT
ACGCGCCGTCACGCTCCGCCACGAGACGCTCGTCATCGAGGTCGTCGATC
GCCGCGAGCTGGAGCTTCCCAATGTCGGGCTGATCGAGCTGGCCGACGCT
CGCACCGGGCGGGTCGTCGAGGTCGACACCCGCCGCGCCGCGACCCGGCA
GCGCTTCGCCGACGCGGCCACGACACGCCTGGCCGACCACGCTCGTGATG
TGCGGGCCGCCCGAGCTGACCATCTTCTCCTGCGTACCGATCGCGACTGG
GTGCTCGATCTGGCCAAGTTCGTCGATCGGCGCAAGCGCAGTCGCCGGGT
CGCCTCGACGGTGGTCGCATGA
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