mRNA_M-pyrifera_M_contig1193.3976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1193.3976.1
Unique NamemRNA_M-pyrifera_M_contig1193.3976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1193.3976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1193contigM-pyrifera_M_contig1193:5810..6436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1193.3976.1prot_M-pyrifera_M_contig1193.3976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1193 5993..6415 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.574515-UTR-M-pyrifera_M_contig1193:5809..59921622815712.574515-UTR-M-pyrifera_M_contig1193:5809..5992Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1193 5810..5992 +
1692277534.2310526-UTR-M-pyrifera_M_contig1193:5809..59921692277534.2310526-UTR-M-pyrifera_M_contig1193:5809..5992Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1193 5810..5992 +
1622815712.6001015-UTR-M-pyrifera_M_contig1193:6415..64361622815712.6001015-UTR-M-pyrifera_M_contig1193:6415..6436Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1193 6416..6436 +
1692277534.2517548-UTR-M-pyrifera_M_contig1193:6415..64361692277534.2517548-UTR-M-pyrifera_M_contig1193:6415..6436Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1193 6416..6436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.586993-CDS-M-pyrifera_M_contig1193:5992..64151622815712.586993-CDS-M-pyrifera_M_contig1193:5992..6415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1193 5993..6415 +
1692277534.24194-CDS-M-pyrifera_M_contig1193:5992..64151692277534.24194-CDS-M-pyrifera_M_contig1193:5992..6415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1193 5993..6415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1193.3976.1

>prot_M-pyrifera_M_contig1193.3976.1 ID=prot_M-pyrifera_M_contig1193.3976.1|Name=mRNA_M-pyrifera_M_contig1193.3976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MSCASQNSVPRARLVKGCDDPPLPVCPLCHDESPVAPNSRKSGDSTPLVV
DKVEGTVQRRDKVKEGRASVPTLSVLRCRPGKTAESCLVDEPAKTGRAGW
ARSCCRPLLKNDIPLRSPAASPSPLWDGVPESLSCDKAFG*
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mRNA from alignment at M-pyrifera_M_contig1193:5810..6436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1193.3976.1 ID=mRNA_M-pyrifera_M_contig1193.3976.1|Name=mRNA_M-pyrifera_M_contig1193.3976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=627bp|location=Sequence derived from alignment at M-pyrifera_M_contig1193:5810..6436+ (Macrocystis pyrifera P11B4 male)
CGGAAAACCCTCCAAGAGCGTTATGAAAATTGGCTCGTTTCGAGTTTGGA
AACGACAGTAGGCACCCGCGCTTACCGTAAATTCTATCCACTGTAACCTT
TTTACACGCCAACGGCGGTCGTGGCGGTCAACGTCGCAAGAAACTTGAAC
ACGAACTAGGGCAAAAAGAACAGGCACTATCGCATGAGCTGCGCATCCCA
AAACTCTGTGCCGCGTGCGCGCTTGGTCAAAGGTTGTGACGACCCCCCCC
TGCCCGTTTGCCCGTTATGCCACGATGAATCTCCGGTTGCACCCAACAGC
CGCAAAAGTGGCGATTCCACACCCCTCGTTGTTGACAAGGTCGAAGGAAC
TGTCCAACGCCGCGATAAAGTTAAAGAAGGACGAGCTTCGGTCCCAACGT
TGTCTGTTCTTCGATGTCGGCCTGGCAAGACTGCCGAGTCCTGCTTAGTC
GACGAACCTGCCAAGACAGGACGCGCAGGTTGGGCTCGGTCGTGCTGCAG
GCCCTTGCTAAAGAACGATATCCCTTTACGCTCGCCTGCGGCATCGCCAT
CTCCTCTTTGGGATGGCGTGCCCGAGTCACTTTCTTGCGATAAGGCGTTT
GGCTGAACCATCCAAAGCTGTATGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1193:5810..6436+

>mRNA_M-pyrifera_M_contig1193.3976.1 ID=mRNA_M-pyrifera_M_contig1193.3976.1|Name=mRNA_M-pyrifera_M_contig1193.3976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig1193:5810..6436+ (Macrocystis pyrifera P11B4 male)
ATGAGCTGCGCATCCCAAAACTCTGTGCCGCGTGCGCGCTTGGTCAAAGG
TTGTGACGACCCCCCCCTGCCCGTTTGCCCGTTATGCCACGATGAATCTC
CGGTTGCACCCAACAGCCGCAAAAGTGGCGATTCCACACCCCTCGTTGTT
GACAAGGTCGAAGGAACTGTCCAACGCCGCGATAAAGTTAAAGAAGGACG
AGCTTCGGTCCCAACGTTGTCTGTTCTTCGATGTCGGCCTGGCAAGACTG
CCGAGTCCTGCTTAGTCGACGAACCTGCCAAGACAGGACGCGCAGGTTGG
GCTCGGTCGTGCTGCAGGCCCTTGCTAAAGAACGATATCCCTTTACGCTC
GCCTGCGGCATCGCCATCTCCTCTTTGGGATGGCGTGCCCGAGTCACTTT
CTTGCGATAAGGCGTTTGGCTGAATGAGCTGCGCATCCCAAAACTCTGTG
CCGCGTGCGCGCTTGGTCAAAGGTTGTGACGACCCCCCCCTGCCCGTTTG
CCCGTTATGCCACGATGAATCTCCGGTTGCACCCAACAGCCGCAAAAGTG
GCGATTCCACACCCCTCGTTGTTGACAAGGTCGAAGGAACTGTCCAACGC
CGCGATAAAGTTAAAGAAGGACGAGCTTCGGTCCCAACGTTGTCTGTTCT
TCGATGTCGGCCTGGCAAGACTGCCGAGTCCTGCTTAGTCGACGAACCTG
CCAAGACAGGACGCGCAGGTTGGGCTCGGTCGTGCTGCAGGCCCTTGCTA
AAGAACGATATCCCTTTACGCTCGCCTGCGGCATCGCCATCTCCTCTTTG
GGATGGCGTGCCCGAGTCACTTTCTTGCGATAAGGCGTTTGGCTGA
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