mRNA_M-pyrifera_M_contig119292.3972.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119292.3972.1
Unique NamemRNA_M-pyrifera_M_contig119292.3972.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A067BPP4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BPP4_SAPPC)

HSP 1 Score: 87.8 bits (216), Expect = 1.670e-19
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 QIKAGGNELFKTARFEEAITKYTQAIEAGDP-SDPVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            Q+K  GN+LFK+A+FE+AI  YT+AIEA +  S PV +SCYNNRAACHQQ S FS V+ DCS VLE E
Sbjct:  137 QLKEQGNDLFKSAQFEKAIGIYTEAIEACEKDSSPVAISCYNNRAACHQQLSNFSAVIRDCSHVLEVE 204
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BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A397EBK3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EBK3_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.880e-19
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 QIKAGGNELFKTARFEEAITKYTQAIEAGDPSD-PVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYEVR 207
            Q+K  GN+LFK A FE+AI  Y +AI A +  + PV +SCYNNRAACHQQ S FS V+ DCS VLEY+VR
Sbjct:  158 QLKEQGNDLFKAASFEKAIEVYGEAINACEKDNSPVAISCYNNRAACHQQLSNFSAVIRDCSHVLEYDVR 227
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BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A6G0WPM3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPM3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.420e-19
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    4 IKAGGNELFKTARFEEAITKYTQAIEAGDPSD-PVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            +K  GN+LFK A FE+AI  YT+AI A +  D PV +SCYNNRAACHQQ S FS V+ DCS VLEYE
Sbjct:  139 LKEQGNDLFKAASFEKAIEVYTEAINACEKDDSPVAISCYNNRAACHQQLSNFSAVIRDCSHVLEYE 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A2D4BRJ1_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRJ1_PYTIN)

HSP 1 Score: 87.0 bits (214), Expect = 3.350e-19
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    4 IKAGGNELFKTARFEEAITKYTQAIEAGDPSD-PVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            +K  GN+ FK A FE AI  YT+A+EA D  D P+ LSCYNNRAAC+QQ SAFS VV DC+ VLEYE
Sbjct:  138 LKEEGNDAFKKAHFERAIELYTEALEASDRQDSPLALSCYNNRAACNQQLSAFSAVVRDCTHVLEYE 204
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BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A1V9ZNL3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZNL3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.480e-19
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    4 IKAGGNELFKTARFEEAITKYTQAIEAGDP-SDPVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            +K  GN+LFK+A+FE+AI  YT+AIEA +  S PV +SCYNNRAACHQQ S FS V+ DCS VLE E
Sbjct:  138 LKEQGNDLFKSAQFEKAIGVYTEAIEACEKDSSPVAISCYNNRAACHQQLSNFSAVIRDCSHVLEVE 204
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BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A485KMF3_9STRA (Aste57867_9291 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMF3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.690e-19
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QIKAGGNELFKTARFEEAITKYTQAIEAGDPSDPVV-LSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            Q+K  GN+LFK A FE+AI  YT+AI A +  D  V +SCYNNRAACHQQ S FS V+ DCS VLEYE
Sbjct:  138 QLKEQGNDLFKAASFEKAIEVYTEAINACEKDDSAVAISCYNNRAACHQQLSNFSAVIRDCSHVLEYE 205
[Close]
BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A1V9ZC66_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC66_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.450e-18
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 QIKAGGNELFKTARFEEAITKYTQAIEAGDP-SDPVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            ++K  GN+LFK+A+FE+AI  YT+AI++ D  S P+ +SCYNNRAACHQQ S FS V+ DCS VLE E
Sbjct:  353 KLKEQGNDLFKSAQFEKAIEVYTEAIDSCDKDSSPLAISCYNNRAACHQQLSNFSAVIRDCSHVLELE 420
[Close]
BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A397FL55_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FL55_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.830e-17
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QIKAGGNELFKTARFEEAITKYTQAIEAGDPSD-PVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            Q+K  GN+LFK A FE+AI  Y +AI A +  + PV +SCYNNRAACHQQ S FS V+ DCS VLEY+
Sbjct:  158 QLKEQGNDLFKAASFEKAIEVYGEAINACEKDNSPVAISCYNNRAACHQQLSNFSAVIRDCSHVLEYD 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: A0A3R7BUG1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BUG1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.450e-17
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 QIKAGGNELFKTARFEEAITKYTQAIEAGDPSD-PVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            Q+K  GN+LFK A FE+AI  Y +AI A +  + PV +SCYNNRAACHQQ S FS V+ DCS VLEY+
Sbjct:  267 QLKEQGNDLFKAASFEKAIEVYGEAINACEKDNSPVAISCYNNRAACHQQLSNFSAVIRDCSHVLEYD 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Match: F0WFZ7_9STRA (Uncharacterized protein AlNc14C86G5530 n=2 Tax=Albugo TaxID=65356 RepID=F0WFZ7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.290e-16
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 QIKAGGNELFKTARFEEAITKYTQAIEAGD-PSDPVVLSCYNNRAACHQQHSAFSKVVSDCSVVLEYE 201
            QIK  GN+ FK A F+ AI  YT+AI+A D  +  + LSC+NNRAACHQQ S FS +V DC+ VLEYE
Sbjct:  148 QIKEQGNDAFKKAAFDLAIDLYTKAIKACDNETSALALSCFNNRAACHQQMSNFSAIVGDCTHVLEYE 215
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119292.3972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067BPP4_SAPPC1.670e-1964.71Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A397EBK3_9STRA1.880e-1961.43Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0WPM3_9STRA2.420e-1964.18Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4BRJ1_PYTIN3.350e-1964.18Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A1V9ZNL3_9STRA6.480e-1964.18Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KMF3_9STRA6.690e-1963.24Aste57867_9291 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZC66_9STRA9.450e-1860.29Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A397FL55_9STRA1.830e-1760.29Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A3R7BUG1_9STRA2.450e-1760.29Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
F0WFZ7_9STRA3.290e-1658.82Uncharacterized protein AlNc14C86G5530 n=2 Tax=Alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119292contigM-pyrifera_M_contig119292:40..314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue8.1e-15
Seed eggNOG ortholog112098.XP_008608420.1
KEGG koko:K09553
KEGG Pathwayko05020,map05020
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.3274496-CDS-M-pyrifera_M_contig119292:39..1741622815712.3274496-CDS-M-pyrifera_M_contig119292:39..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119292 40..174 -
1692277534.1553793-CDS-M-pyrifera_M_contig119292:39..1741692277534.1553793-CDS-M-pyrifera_M_contig119292:39..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119292 40..174 -
1622815712.343934-CDS-M-pyrifera_M_contig119292:242..3141622815712.343934-CDS-M-pyrifera_M_contig119292:242..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119292 243..314 -
1692277534.168394-CDS-M-pyrifera_M_contig119292:242..3141692277534.168394-CDS-M-pyrifera_M_contig119292:242..314Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119292 243..314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119292.3972.1prot_M-pyrifera_M_contig119292.3972.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119292 40..314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119292.3972.1

>prot_M-pyrifera_M_contig119292.3972.1 ID=prot_M-pyrifera_M_contig119292.3972.1|Name=mRNA_M-pyrifera_M_contig119292.3972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
QIKAGGNELFKTARFEEAITKYTQAIEAGDPSDPVVLSCYNNRAACHQQH
SAFSKVVSDCSVVLEYEVR
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mRNA from alignment at M-pyrifera_M_contig119292:40..314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119292.3972.1 ID=mRNA_M-pyrifera_M_contig119292.3972.1|Name=mRNA_M-pyrifera_M_contig119292.3972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=275bp|location=Sequence derived from alignment at M-pyrifera_M_contig119292:40..314- (Macrocystis pyrifera P11B4 male)
CAGATCAAGGCCGGGGGCAACGAGCTGTTCAAGACGGCGCGTTTCGAGGA
GGCCATCACCAAGTACACGCAGGTGCGGGCGTGCGCCCTGAGTGCACGTG
CCCACATCCCCAGCCCCTCACCCACCTCACCCTGCTGCAGGCAATCGAGG
CTGGCGATCCGTCGGACCCTGTGGTGCTGAGCTGCTACAACAACCGTGCT
GCGTGCCACCAGCAGCACTCTGCCTTCAGCAAGGTCGTCAGCGACTGCTC
TGTCGTGCTGGAGTACGAGGTACGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119292:40..314-

>mRNA_M-pyrifera_M_contig119292.3972.1 ID=mRNA_M-pyrifera_M_contig119292.3972.1|Name=mRNA_M-pyrifera_M_contig119292.3972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig119292:40..314- (Macrocystis pyrifera P11B4 male)
CAGATCAAGGCCGGGGGCAACGAGCTGTTCAAGACGGCGCGTTTCGAGGA
GGCCATCACCAAGTACACGCAGCAGATCAAGGCCGGGGGCAACGAGCTGT
TCAAGACGGCGCGTTTCGAGGAGGCCATCACCAAGTACACGCAGGCAATC
GAGGCTGGCGATCCGTCGGACCCTGTGGTGCTGAGCTGCTACAACAACCG
TGCTGCGTGCCACCAGCAGCACTCTGCCTTCAGCAAGGTCGTCAGCGACT
GCTCTGTCGTGCTGGAGTACGAGGTACGAGCAATCGAGGCTGGCGATCCG
TCGGACCCTGTGGTGCTGAGCTGCTACAACAACCGTGCTGCGTGCCACCA
GCAGCACTCTGCCTTCAGCAAGGTCGTCAGCGACTGCTCTGTCGTGCTGG
AGTACGAGGTACGA
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