mRNA_M-pyrifera_M_contig119283.3968.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119283.3968.1
Unique NamemRNA_M-pyrifera_M_contig119283.3968.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A0L0EYG8_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0EYG8_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.750e-18
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPSYQTMGKDLRQ 237
            GTD+P  D L++ RPT S+ L+ QM+GRGLR++PGK++CLVLD+VD++ +H  DL  +T P L G+   ++  G DL Q
Sbjct:   13 GTDIPSVDCLIMGRPTKSSVLFQQMIGRGLRLHPGKENCLVLDVVDVVNKH--DL--VTLPTLLGLSSEFKLAGHDLIQ 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A0L0DNS8_THETB (DEAD/DEAH box helicase domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNS8_THETB)

HSP 1 Score: 80.9 bits (198), Expect = 4.810e-16
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPSYQTMGKDLRQ 237
            GTD+P+ D +VLARPT S  L+ QMLGRGLR  PGK  C+VLD+VD           +T P L G+ P +  + +DL Q
Sbjct:  335 GTDIPIIDCVVLARPTKSQGLFQQMLGRGLRTAPGKTACIVLDVVDSFANKAKSRGLVTLPSLLGLAPDFALVNQDLAQ 413
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A507CQ30_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CQ30_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 8.980e-16
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPSYQTMGKDL 231
            GTD+P  DS++LARPT SA L  QMLGRGLR++P K DCLVLD VD    + G L   TAP L G+P  +     D+
Sbjct:  343 GTDVPCVDSILLARPTRSAGLLLQMLGRGLRLHPSKTDCLVLDFVD--STNSGTLLGSTAPTLLGLPADFDLQDLDI 417
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A0B7NDA0_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NDA0_9FUNG)

HSP 1 Score: 78.2 bits (191), Expect = 4.300e-15
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPSYQTMGKDL 231
            GTD+P+ D ++LARPT SA L+ QM GRGLR++PGK+DCLV+D VD   E  G    +T P L G+  S     +D+
Sbjct:  454 GTDIPIVDCILLARPTQSATLFQQMFGRGLRLFPGKEDCLVIDFVDSFTEK-GKHSLVTIPTLLGLSASEAIEDRDI 529
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A4S9ZML4_AURPU (DEAD/DEAH box helicase-like protein n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S9ZML4_AURPU)

HSP 1 Score: 77.0 bits (188), Expect = 1.050e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPS 207
            GTD+P  D ++LARPT S NL  QM+GRGLR+YPGK+DC ++D+V  LG  +     +T P LFG+ PS
Sbjct:  210 GTDIPNIDCVLLARPTKSRNLLVQMIGRGLRLYPGKEDCHIIDMVASLGTGI-----VTTPTLFGLDPS 273
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A4S9QTV7_AURPU (DEAD/DEAH box helicase-like protein n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S9QTV7_AURPU)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPS 207
            GTD+P  D ++LARPT S NL  QM+GRGLR+YPGK+DC ++D+V  LG  +     +T P LFG+ PS
Sbjct:  364 GTDIPNIDCVLLARPTKSRNLLVQMIGRGLRLYPGKEDCHIIDMVASLGTGI-----VTTPTLFGLDPS 427
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A4T0DMG8_AURPU (DEAD/DEAH box helicase-like protein (Fragment) n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4T0DMG8_AURPU)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPS 207
            GTD+P  D ++LARPT S NL  QM+GRGLR+YPGK+DC ++D+V  LG  +     +T P LFG+ PS
Sbjct:  210 GTDIPNIDCVLLARPTKSRNLLVQMIGRGLRLYPGKEDCHIIDMVASLGTGI-----VTTPTLFGLDPS 273
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A507ETU1_9FUNG (Helicase C-terminal domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ETU1_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 1.080e-14
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPSYQTMGKDLRQ 237
            G D+P  D ++LARPT S+ L  QMLGRGLR YPGK  CLV+D+ D++       R  T P L G+ P++   G  L++
Sbjct:  331 GVDIPAIDCVILARPTQSSVLLQQMLGRGLRTYPGKTHCLVIDMADVMSSRA---RMATVPSLIGLDPAFDLEGLSLKE 406
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A0L0HQU1_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HQU1_SPIPD)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-14
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGIPPSYQTMGKDLRQ 237
            G D+P  D ++LARPT S+ L  QMLGRGLR YPGK  CLV+D+ D++       R  T P L G+ P++   G  L++
Sbjct:  368 GVDIPAIDCVILARPTQSSVLLQQMLGRGLRTYPGKTHCLVIDMADVMSSRA---RMATVPSLIGLDPAFDLEGLSLKE 443
[Close]
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Match: A0A1W1VSQ2_9THEO (Helicase conserved C-terminal domain-containing protein n=2 Tax=Thermanaeromonas TaxID=202949 RepID=A0A1W1VSQ2_9THEO)

HSP 1 Score: 76.6 bits (187), Expect = 1.470e-14
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGEHVGDLRQLTAPELFGI 198
            G D+P TD +++ARPT S  LY QMLGRGLR+YPGK+DCLV+D+ D    +      LT P LFG+
Sbjct:  300 GVDIPATDCIIMARPTRSRVLYMQMLGRGLRLYPGKEDCLVIDVCDNCARNDA----LTLPTLFGV 361
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119283.3968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0EYG8_9EUKA1.750e-1849.37Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A0L0DNS8_THETB4.810e-1648.10DEAD/DEAH box helicase domain-containing protein n... [more]
A0A507CQ30_9FUNG8.980e-1653.25Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A0B7NDA0_9FUNG4.300e-1549.35Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
A0A4S9ZML4_AURPU1.050e-1453.62DEAD/DEAH box helicase-like protein n=1 Tax=Aureob... [more]
A0A4S9QTV7_AURPU1.070e-1453.62DEAD/DEAH box helicase-like protein n=1 Tax=Aureob... [more]
A0A4T0DMG8_AURPU1.070e-1453.62DEAD/DEAH box helicase-like protein (Fragment) n=1... [more]
A0A507ETU1_9FUNG1.080e-1445.57Helicase C-terminal domain-containing protein n=1 ... [more]
A0A0L0HQU1_SPIPD1.090e-1445.57Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A1W1VSQ2_9THEO1.470e-1454.55Helicase conserved C-terminal domain-containing pr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119283contigM-pyrifera_M_contig119283:307..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog529818.AMSG_01370T0
Preferred nameirc3
KEGG koko:K17677
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0032042,GO:0033676,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.DEAD DEAH box helicase
EggNOG OGs2QT4U@2759,COG1061@1
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.000851-CDS-M-pyrifera_M_contig119283:306..5431622815712.000851-CDS-M-pyrifera_M_contig119283:306..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119283 307..543 -
1692277533.9829297-CDS-M-pyrifera_M_contig119283:306..5431692277533.9829297-CDS-M-pyrifera_M_contig119283:306..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119283 307..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119283.3968.1prot_M-pyrifera_M_contig119283.3968.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119283 307..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119283.3968.1

>prot_M-pyrifera_M_contig119283.3968.1 ID=prot_M-pyrifera_M_contig119283.3968.1|Name=mRNA_M-pyrifera_M_contig119283.3968.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
GTDLPVTDSLVLARPTASANLYYQMLGRGLRVYPGKQDCLVLDIVDLLGE
HVGDLRQLTAPELFGIPPSYQTMGKDLRQ
back to top

mRNA from alignment at M-pyrifera_M_contig119283:307..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119283.3968.1 ID=mRNA_M-pyrifera_M_contig119283.3968.1|Name=mRNA_M-pyrifera_M_contig119283.3968.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig119283:307..543- (Macrocystis pyrifera P11B4 male)
GGCACCGACCTCCCTGTCACCGATAGTCTAGTGCTGGCGAGGCCCACCGC
TTCAGCCAACCTCTACTACCAGATGCTGGGGAGGGGCCTGCGAGTGTACC
CTGGCAAGCAAGACTGTCTTGTGCTCGACATAGTGGATCTCCTTGGTGAG
CATGTGGGTGACCTCCGCCAACTCACTGCTCCCGAGCTCTTTGGCATTCC
ACCGAGTTACCAGACAATGGGGAAGGATCTGAGACAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig119283:307..543-

>mRNA_M-pyrifera_M_contig119283.3968.1 ID=mRNA_M-pyrifera_M_contig119283.3968.1|Name=mRNA_M-pyrifera_M_contig119283.3968.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig119283:307..543- (Macrocystis pyrifera P11B4 male)
GGCACCGACCTCCCTGTCACCGATAGTCTAGTGCTGGCGAGGCCCACCGC
TTCAGCCAACCTCTACTACCAGATGCTGGGGAGGGGCCTGCGAGTGTACC
CTGGCAAGCAAGACTGTCTTGTGCTCGACATAGTGGATCTCCTTGGTGAG
CATGTGGGTGACCTCCGCCAACTCACTGCTCCCGAGCTCTTTGGCATTCC
ACCGAGTTACCAGACAATGGGGAAGGATCTGAGACAGGGCACCGACCTCC
CTGTCACCGATAGTCTAGTGCTGGCGAGGCCCACCGCTTCAGCCAACCTC
TACTACCAGATGCTGGGGAGGGGCCTGCGAGTGTACCCTGGCAAGCAAGA
CTGTCTTGTGCTCGACATAGTGGATCTCCTTGGTGAGCATGTGGGTGACC
TCCGCCAACTCACTGCTCCCGAGCTCTTTGGCATTCCACCGAGTTACCAG
ACAATGGGGAAGGATCTGAGACAG
back to top