mRNA_M-pyrifera_M_contig119208.3961.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119208.3961.1
Unique NamemRNA_M-pyrifera_M_contig119208.3961.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: A0A6H5JTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.120e-25
Identity = 47/111 (42.34%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   37 GGTAALRLLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEF 369
            G  A   + WV  +  R   +L+++PF P ++ ++G+W   +WKVGLRKP+ ++P A   LT  +WSPTR G+LF+G+ DGS D+WDF +S+ TP++T+ +  + +TS+EF
Sbjct:  743 GDVAPEFVKWVSSDHTRPCVALDKSPFFPGVLLSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEF 853          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: D8LLD9_ECTSI (Putative PKG-Ib n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD9_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.130e-25
Identity = 47/111 (42.34%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   37 GGTAALRLLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEF 369
            G  A   + WV  +  R   +L+++PF P ++ ++G+W   +WKVGLRKP+ ++P A   LT  +WSPTR G+LF+G+ DGS D+WDF +S+ TP++T+ +  + +TS+EF
Sbjct:  737 GDVAPEFVKWVSSDHTRPCVALDKSPFFPGVLLSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEF 847          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: A0A7S2SK86_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SK86_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.100e-23
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   25 EEGRGGTAALRLLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEF 369
            EEG G  A   + W+  +  R   +L+ +PF P+L+ ++G+W   LW +G   PI ++P A   L+  +WSPTR G+LFVG+ DGS D+WD  +S+  PALT    ST VT LEF
Sbjct:  644 EEGDGTDAPEYVQWMAPDHPRPCVALQPSPFFPNLLLSVGDWSFQLWMLGREVPIFSSPAASTSLSSGRWSPTRPGMLFVGKLDGSMDVWDLTDSSYKPALTCTVASTQVTELEF 758          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: A0A6U4HRU9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HRU9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.640e-19
Identity = 44/123 (35.77%), Postives = 73/123 (59.35%), Query Frame = 1
Query:    1 GGGEKGDKEEGRGGTAALRLLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEF 369
            G G+  + EE  G      +LW   +  R   SL+++PF   +  ++G+W   LWK+G++KPI ++P + A LT  +WSP+R  +LF+ R DGS D+WDF +++   +  + A    +TS+EF
Sbjct:  222 GSGQPAEGEEDDGVDVPECVLWTAKDHSRPCVSLQQSPFFEEVFLSVGDWSFQLWKLGVQKPIFSSPISDAYLTNGRWSPSRPAVLFISRIDGSIDVWDFTDTSYRHSQRLNASPNRITSIEF 344          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: F0YDW1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDW1_AURAN)

HSP 1 Score: 94.0 bits (232), Expect = 3.000e-19
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   58 LLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEF 369
            + W+  +  R    L ++PF P +V ++G+W+  LWK+   +PI ++P+A   LT   WSPTR G+L++ R+DGS D+WD  +S+  PA  +    T +TS++F
Sbjct:  559 VQWMAPDHSRPATVLMKSPFFPDMVLSVGDWNFQLWKLDHPRPIFSSPQASVSLTTGCWSPTRPGMLYMARSDGSVDVWDLTDSSYRPAAQLMVAPTRITSIKF 662          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: A0A7S3NKH4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKH4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.490e-16
Identity = 40/106 (37.74%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   58 LLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVG--LRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEF 369
            + W   +  R   +LE++PF   LV +IG+++  LWK+   L +P+ ++P++ +PLT   WSPTR G++F  RADG+ D+WD  +S+  P+  +    T VT+L+F
Sbjct:  762 VCWTAPDHTRPPIALEKSPFFDDLVMSIGDYNFQLWKLDACLLQPVYSSPQSTSPLTAGCWSPTRPGVIFTARADGTLDVWDIPDSSRRPSHQLMVAPTRVTALKF 867          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: A0A7S2RYD5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RYD5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.100e-16
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   55 RLLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTP--RAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEFQ 372
            ++ WV  +  R    L R+PF P LV ++     ++WK  L +P+ ++P     A LT A+WSPTR G++ VGR DGS D+WD  + +  P+ T+P  +  +TS+ F+
Sbjct:  723 KVAWVARDHFRDCCGLCRSPFFPFLVLSVSANQFNIWKEDLNRPLFSSPIVTGTAHLTCAEWSPTRPGVIIVGRNDGSVDIWDLMDQSYRPSTTVPIAAYAITSIHFR 830          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: UPI001B887F2D (dynein intermediate chain 3, axonemal-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887F2D)

HSP 1 Score: 81.6 bits (200), Expect = 6.000e-15
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  100 LERNPFLPSLVAAIGEWHVSLWKVGLRK-PILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSL 363
            L+R+PF   ++  IG W  SLWK G+   PILT    P  LT   WSPTR G+ +V +ADGS D+WD  + T  PALT    +  +T++
Sbjct:  766 LQRSPFFKDVLLVIGGWTFSLWKEGVTSGPILTCAANPVKLTSGHWSPTRPGVFYVAKADGSIDIWDLLDKTHEPALTQSVSTASITTV 854          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: A0A8J6CA46_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CA46_DIALT)

HSP 1 Score: 80.1 bits (196), Expect = 2.030e-14
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   97 SLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAIS-TGVTSLEFQTQK 381
            +L+R+PF   +   +G+W   +WK G+  PI ++P  P  LT   WSP+RA ++F+ +ADGS D+WD A+ T  P+ +   +    VTSL+   Q+
Sbjct:  637 ALQRSPFFRDIYLTVGDWSSHVWKEGVSAPIFSSPYTPERLTAGCWSPSRAAVIFLAKADGSVDVWDLADRTHEPSTSFNVVGGAAVTSLDMFAQQ 732          
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Match: A0A2R5G2A5_9STRA (Cytoplasmic dynein 1 intermediate chain n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2A5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.860e-14
Identity = 35/108 (32.41%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   55 RLLWVELELGRAGRSLERNPFLPSLVAAIGEWHVSLWKVGLRKPILTTPRAP--APLTMAKWSPTRAGLLFVGRADGSFDLWDFAESTLTPALTIPAISTGVTSLEFQ 372
            ++ WV  +   +  +L R+PF P L+ ++     ++WK  L +PI ++P +   A L  A+WSPTR G++ VG+ DG+ D+WDF + +  P+++    +  +TS++F+
Sbjct:  874 KVYWVARDHFASCLALRRSPFFPYLILSVSAHSFNIWKEDLAQPIFSSPLSTGMAHLACAEWSPTRPGVIMVGKTDGTVDIWDFVDQSHRPSVSASITAYAITSMQFR 981          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119208.3961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTY6_9PHAE1.120e-2542.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLD9_ECTSI1.130e-2542.34Putative PKG-Ib n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A7S2SK86_9STRA2.100e-2343.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4HRU9_9STRA1.640e-1935.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0YDW1_AURAN3.000e-1937.50Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3NKH4_9STRA1.490e-1637.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2RYD5_9STRA5.100e-1637.04Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI001B887F2D6.000e-1543.82dynein intermediate chain 3, axonemal-like isoform... [more]
A0A8J6CA46_DIALT2.030e-1437.50Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A2R5G2A5_9STRA2.860e-1432.41Cytoplasmic dynein 1 intermediate chain n=1 Tax=Ho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119208contigM-pyrifera_M_contig119208:29..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D8LLD9
Preferred nameWDR63
KEGG koko:K07376,ko:K17770
KEGG TC3.A.8.1
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0030286,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045503,GO:0045504,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
EC2.7.11.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815711.6805177-CDS-M-pyrifera_M_contig119208:28..5261622815711.6805177-CDS-M-pyrifera_M_contig119208:28..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119208 29..526 -
1692277533.8134346-CDS-M-pyrifera_M_contig119208:28..5261692277533.8134346-CDS-M-pyrifera_M_contig119208:28..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119208 29..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119208.3961.1prot_M-pyrifera_M_contig119208.3961.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119208 29..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119208.3961.1

>prot_M-pyrifera_M_contig119208.3961.1 ID=prot_M-pyrifera_M_contig119208.3961.1|Name=mRNA_M-pyrifera_M_contig119208.3961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
GGGEKGDKEEGRGGTAALRLLWVELELGRAGRSLERNPFLPSLVAAIGEW
HVSLWKVGLRKPILTTPRAPAPLTMAKWSPTRAGLLFVGRADGSFDLWDF
AESTLTPALTIPAISTGVTSLEFQTQKHAIGYHTDLSSTLRATTTTTSTT
KPTTSTTKTTTTTTTT
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mRNA from alignment at M-pyrifera_M_contig119208:29..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119208.3961.1 ID=mRNA_M-pyrifera_M_contig119208.3961.1|Name=mRNA_M-pyrifera_M_contig119208.3961.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig119208:29..526- (Macrocystis pyrifera P11B4 male)
GGGGGTGGAGAGAAAGGGGACAAGGAGGAAGGCAGAGGAGGGACGGCTGC ATTGCGGTTGTTGTGGGTGGAGTTGGAGCTGGGAAGAGCAGGGAGGTCTT TGGAAAGAAACCCATTCTTGCCTTCTCTCGTAGCAGCCATTGGAGAATGG CATGTCTCACTCTGGAAGGTGGGACTCAGAAAACCCATACTCACCACCCC TAGAGCACCTGCACCACTCACCATGGCGAAATGGTCACCAACAAGAGCTG GACTCTTGTTCGTGGGGAGGGCTGATGGAAGCTTTGACTTGTGGGACTTT GCAGAATCTACACTCACTCCAGCTCTCACCATCCCTGCCATTTCCACCGG AGTCACCTCTCTTGAATTCCAAACCCAAAAACACGCCATTGGATACCACA CAGATCTCTCTTCCACCCTACGTGCCACCACCACCACCACCTCCACCACA AAACCCACCACCTCCACCACCAAAACAACAACCACCACCACCACAACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119208:29..526-

>mRNA_M-pyrifera_M_contig119208.3961.1 ID=mRNA_M-pyrifera_M_contig119208.3961.1|Name=mRNA_M-pyrifera_M_contig119208.3961.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig119208:29..526- (Macrocystis pyrifera P11B4 male)
GGGGGTGGAGAGAAAGGGGACAAGGAGGAAGGCAGAGGAGGGACGGCTGC
ATTGCGGTTGTTGTGGGTGGAGTTGGAGCTGGGAAGAGCAGGGAGGTCTT
TGGAAAGAAACCCATTCTTGCCTTCTCTCGTAGCAGCCATTGGAGAATGG
CATGTCTCACTCTGGAAGGTGGGACTCAGAAAACCCATACTCACCACCCC
TAGAGCACCTGCACCACTCACCATGGCGAAATGGTCACCAACAAGAGCTG
GACTCTTGTTCGTGGGGAGGGCTGATGGAAGCTTTGACTTGTGGGACTTT
GCAGAATCTACACTCACTCCAGCTCTCACCATCCCTGCCATTTCCACCGG
AGTCACCTCTCTTGAATTCCAAACCCAAAAACACGCCATTGGATACCACA
CAGATCTCTCTTCCACCCTACGTGCCACCACCACCACCACCTCCACCACA
AAACCCACCACCTCCACCACCAAAACAACAACCACCACCACCACAACCGG
GGGTGGAGAGAAAGGGGACAAGGAGGAAGGCAGAGGAGGGACGGCTGCAT
TGCGGTTGTTGTGGGTGGAGTTGGAGCTGGGAAGAGCAGGGAGGTCTTTG
GAAAGAAACCCATTCTTGCCTTCTCTCGTAGCAGCCATTGGAGAATGGCA
TGTCTCACTCTGGAAGGTGGGACTCAGAAAACCCATACTCACCACCCCTA
GAGCACCTGCACCACTCACCATGGCGAAATGGTCACCAACAAGAGCTGGA
CTCTTGTTCGTGGGGAGGGCTGATGGAAGCTTTGACTTGTGGGACTTTGC
AGAATCTACACTCACTCCAGCTCTCACCATCCCTGCCATTTCCACCGGAG
TCACCTCTCTTGAATTCCAAACCCAAAAACACGCCATTGGATACCACACA
GATCTCTCTTCCACCCTACGTGCCACCACCACCACCACCTCCACCACAAA
ACCCACCACCTCCACCACCAAAACAACAACCACCACCACCACAACC
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