mRNA_M-pyrifera_M_contig119158.3942.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119158.3942.1
Unique NamemRNA_M-pyrifera_M_contig119158.3942.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A518IUN0_9BACT (Quinone oxidoreductase 1 n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518IUN0_9BACT)

HSP 1 Score: 235 bits (599), Expect = 2.930e-75
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 1
Query:    1 QPLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVSVAGQSA 372
            QPLRLGLDAVAGTSTSRLAACLSEGGT+VNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVSVAGQSA
Sbjct:  207 QPLRLGLDAVAGTSTSRLAACLSEGGTVVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVSVAGQSA 330          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A0P8DBU3_9CYAN (Zn-dependent oxidoreductase n=1 Tax=Phormidesmis priestleyi Ana TaxID=1666911 RepID=A0A0P8DBU3_9CYAN)

HSP 1 Score: 130 bits (326), Expect = 3.390e-34
Identity = 65/117 (55.56%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 QPLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIV 351
            +P+RLGLDAVAG     LA CLS+GG IVNYGMLSGE C +  +Q IF  I L+GFWLSK LNR+   +RTAL+D +S ++A+  L+ ++DS F++ +I +AL RAE+ GR GKV+V
Sbjct:  207 EPIRLGLDAVAGPGIQHLAECLSDGGQIVNYGMLSGESCSLSPNQTIFHNISLKGFWLSKILNRLPQNERTALFDTLSYLVAQDQLKMDIDSYFSITDITSALQRAEQRGRQGKVLV 323          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A5C6B3D2_9BACT (Quinone oxidoreductase 1 n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6B3D2_9BACT)

HSP 1 Score: 123 bits (308), Expect = 1.440e-31
Identity = 67/118 (56.78%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 QPLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVS 354
            QPLRL LDA+AG  T+ LA+ LSE GTIVNYGMLSGE C +  +  IFR I L GFWLSK LNR+ L +RT LY  +   +    L+  VDS F + EI  AL RAE+ GR GKVIV+
Sbjct:  207 QPLRLALDAIAGAGTNHLASALSEHGTIVNYGMLSGEPCLITPENTIFRNISLRGFWLSKILNRLNLGERTELYSTLCNYLVNGQLKLSVDSCFDITEINDALKRAEQRGRVGKVIVT 324          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A5C6A0M2_9BACT (Quinone oxidoreductase 1 n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6A0M2_9BACT)

HSP 1 Score: 122 bits (306), Expect = 3.230e-31
Identity = 64/118 (54.24%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 QPLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVS 354
            Q ++LGLDAVAG ST R+AACL++GG IVNYGMLS E C +     IFR I+L GFWLSK LNR++  +R +    + +++A + L  +VDS F++DEI+ A+ RAE+PGRSGKV +S
Sbjct:  207 QAIKLGLDAVAGESTDRIAACLADGGMIVNYGMLSVEPCRLNPMHTIFRNIQLTGFWLSKILNRLSAQERQSHILELVDLLASQKLHSDVDSVFSIDEISNAITRAEQPGRSGKVFIS 324          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A354P9Q7_9PLAN (PKS_ER domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A354P9Q7_9PLAN)

HSP 1 Score: 113 bits (282), Expect = 1.200e-27
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   13 LGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVS 354
            L  DAVAG+ T  LA CL EGG +V YGMLSGE C +  +  IF+ I+L+GFWLSK LNR+ L  RT LYD+I + I    L   +DS F+++  + AL RAE+ GRSGKV+V+
Sbjct:  211 LAFDAVAGSGTLALADCLLEGGRVVTYGMLSGEPCLLTPEHTIFKNIKLQGFWLSKVLNRLNLNDRTTLYDSICDQIRAGKLTIAIDSVFSINCFSDALKRAEQRGRSGKVVVT 324          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A1N7RRL5_9BURK (Zinc-binding dehydrogenase family oxidoreductase n=1 Tax=Paraburkholderia piptadeniae TaxID=1701573 RepID=A0A1N7RRL5_9BURK)

HSP 1 Score: 112 bits (279), Expect = 4.220e-27
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 PLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIV 351
            PL + LDAV G   +RL A L+ GGT+VNYGMLSG++  +  +  IF GI ++GFWL++RL+RM+L QR AL     E++ R  LQ +V ++FA+D I  AL  AE+PGR GKV +
Sbjct:  208 PLSIALDAVGGDGVARLGALLARGGTLVNYGMLSGQQMRIDCEHAIFGGITVKGFWLTQRLSRMSLAQRDALIGEAVELLERGVLQTQVSATFALDAIGEALRHAEQPGRRGKVFL 323          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A1C9W9C3_9GAMM (Quinone oxidoreductase 1 n=2 Tax=Microbulbifer TaxID=48073 RepID=A0A1C9W9C3_9GAMM)

HSP 1 Score: 106 bits (264), Expect = 3.830e-25
Identity = 54/117 (46.15%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    4 PLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVS 354
            P+RLG+DAV  T+T R+A CL+E  T+VNYGM+SG+ C +    LIFRG+ L+GFWL+K     +  Q+ A+Y  ++++IA   L+  +DS F++ +I  A+A A E  RSGKV+V+
Sbjct:  209 PIRLGIDAVGDTATGRIADCLAEAATLVNYGMMSGKPCKISPASLIFRGVSLKGFWLAKWFENASPEQQIAVYGELTKLIAAGKLKAPIDSVFSVKDIKRAVALAAEGERSGKVLVT 325          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: UPI001A085C7D (Quinone oxidoreductase 1 n=2 Tax=Paraburkholderia metrosideri TaxID=580937 RepID=UPI001A085C7D)

HSP 1 Score: 105 bits (263), Expect = 7.070e-25
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    4 PLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIV 351
            P  L LDAV G   +RLA  L  GGTIVNYGMLSG    +G D++IF G+ L+GFWL+ RL+RMTL QR  L     E++ R  L  E+ + + +D I  AL   +EPGR GKV +
Sbjct:  208 PAMLALDAVGGDGVARLAPLLERGGTIVNYGMLSGRPIELGCDEVIFGGVELKGFWLTHRLSRMTLAQRNTLVAEAVELLRRGVLSAEIAALYPLDAIGNALRHTDEPGRRGKVFL 323          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A523K1P8_9GAMM (Alcohol dehydrogenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523K1P8_9GAMM)

HSP 1 Score: 105 bits (261), Expect = 1.140e-24
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   13 LGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIVSVAG 363
            L +DAVAG +T RLA CLSEGG +VNYG+LSG  C +    ++FRGI L GFWL   L  MT  +R +LY  ++E IA   L  +V++ + ++EI  AL  A   GR GK++V+  G
Sbjct:  211 LAIDAVAGEATGRLAQCLSEGGEVVNYGLLSGRPCSIDPHMVVFRGITLTGFWLVNFLGTMTGGERASLYAELAERIASGELHVDVEAVYPIEEIKTALEHAARGGRDGKILVTANG 327          
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Match: A0A1G6XPD7_9GAMM (NADPH:quinone reductase n=2 Tax=Xanthomonadales TaxID=135614 RepID=A0A1G6XPD7_9GAMM)

HSP 1 Score: 104 bits (260), Expect = 1.560e-24
Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    7 LRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRGIRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIAAALARAEEPGRSGKVIV 351
            +RLG+DAV G +T RLA C++ GGT+VNYGM+SGE C +    L+FR +RL GFWL++     T  ++  +Y  ++ +IA+  LQ  + ++F +  I  A+A A   GRSGKV+V
Sbjct:  210 IRLGIDAVGGVATERLARCVASGGTVVNYGMMSGEPCQISAGSLVFRDVRLVGFWLARWFRHATRAEQAEVYGELTRLIAQGQLQARIAATFPVAAIKEAVAEAARGGRSGKVLV 324          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119158.3942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518IUN0_9BACT2.930e-7599.19Quinone oxidoreductase 1 n=4 Tax=Rosistilla TaxID=... [more]
A0A0P8DBU3_9CYAN3.390e-3455.56Zn-dependent oxidoreductase n=1 Tax=Phormidesmis p... [more]
A0A5C6B3D2_9BACT1.440e-3156.78Quinone oxidoreductase 1 n=1 Tax=Stieleria varia T... [more]
A0A5C6A0M2_9BACT3.230e-3154.24Quinone oxidoreductase 1 n=1 Tax=Rhodopirellula pi... [more]
A0A354P9Q7_9PLAN1.200e-2752.63PKS_ER domain-containing protein n=1 Tax=Planctomy... [more]
A0A1N7RRL5_9BURK4.220e-2750.00Zinc-binding dehydrogenase family oxidoreductase n... [more]
A0A1C9W9C3_9GAMM3.830e-2546.15Quinone oxidoreductase 1 n=2 Tax=Microbulbifer Tax... [more]
UPI001A085C7D7.070e-2549.14Quinone oxidoreductase 1 n=2 Tax=Paraburkholderia ... [more]
A0A523K1P8_9GAMM1.140e-2447.01Alcohol dehydrogenase n=1 Tax=Gammaproteobacteria ... [more]
A0A1G6XPD7_9GAMM1.560e-2444.35NADPH:quinone reductase n=2 Tax=Xanthomonadales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119158contigM-pyrifera_M_contig119158:171..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.5
Seed ortholog evalue5.8e-19
Seed eggNOG ortholog1149133.ppKF707_3711
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc-binding dehydrogenase
EggNOG OGs1MXCV@1224,1S13Q@1236,1YCZ2@136841,COG0604@1,COG0604@2
COG Functional cat.C
Best tax levelPseudomonas aeruginosa group
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.6959538-CDS-M-pyrifera_M_contig119158:170..5451622815710.6959538-CDS-M-pyrifera_M_contig119158:170..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119158 171..545 -
1692277533.35471-CDS-M-pyrifera_M_contig119158:170..5451692277533.35471-CDS-M-pyrifera_M_contig119158:170..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119158 171..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119158.3942.1prot_M-pyrifera_M_contig119158.3942.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119158 171..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119158.3942.1

>prot_M-pyrifera_M_contig119158.3942.1 ID=prot_M-pyrifera_M_contig119158.3942.1|Name=mRNA_M-pyrifera_M_contig119158.3942.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
QPLRLGLDAVAGTSTSRLAACLSEGGTIVNYGMLSGEECCVGGDQLIFRG
IRLEGFWLSKRLNRMTLPQRTALYDAISEMIARKTLQFEVDSSFAMDEIA
AALARAEEPGRSGKVIVSVAGQSA*
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mRNA from alignment at M-pyrifera_M_contig119158:171..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119158.3942.1 ID=mRNA_M-pyrifera_M_contig119158.3942.1|Name=mRNA_M-pyrifera_M_contig119158.3942.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig119158:171..545- (Macrocystis pyrifera P11B4 male)
CAGCCCTTGCGACTGGGACTCGATGCCGTGGCCGGAACAAGCACCAGTCG CTTGGCCGCGTGCCTTAGCGAAGGGGGAACGATCGTTAACTATGGAATGC TGTCGGGCGAGGAGTGTTGCGTCGGTGGCGACCAGTTGATCTTCCGCGGC ATCCGCCTGGAGGGCTTCTGGCTTTCCAAGCGTTTGAATCGCATGACCTT GCCACAGCGAACGGCACTCTACGACGCGATCAGCGAGATGATCGCACGAA AGACGCTGCAGTTCGAAGTCGATTCGTCCTTCGCGATGGATGAGATCGCC GCCGCCTTGGCCCGCGCCGAAGAACCGGGCCGCAGTGGCAAAGTGATAGT CTCCGTCGCCGGACAATCCGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119158:171..545-

>mRNA_M-pyrifera_M_contig119158.3942.1 ID=mRNA_M-pyrifera_M_contig119158.3942.1|Name=mRNA_M-pyrifera_M_contig119158.3942.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig119158:171..545- (Macrocystis pyrifera P11B4 male)
CAGCCCTTGCGACTGGGACTCGATGCCGTGGCCGGAACAAGCACCAGTCG
CTTGGCCGCGTGCCTTAGCGAAGGGGGAACGATCGTTAACTATGGAATGC
TGTCGGGCGAGGAGTGTTGCGTCGGTGGCGACCAGTTGATCTTCCGCGGC
ATCCGCCTGGAGGGCTTCTGGCTTTCCAAGCGTTTGAATCGCATGACCTT
GCCACAGCGAACGGCACTCTACGACGCGATCAGCGAGATGATCGCACGAA
AGACGCTGCAGTTCGAAGTCGATTCGTCCTTCGCGATGGATGAGATCGCC
GCCGCCTTGGCCCGCGCCGAAGAACCGGGCCGCAGTGGCAAAGTGATAGT
CTCCGTCGCCGGACAATCCGCCTGACAGCCCTTGCGACTGGGACTCGATG
CCGTGGCCGGAACAAGCACCAGTCGCTTGGCCGCGTGCCTTAGCGAAGGG
GGAACGATCGTTAACTATGGAATGCTGTCGGGCGAGGAGTGTTGCGTCGG
TGGCGACCAGTTGATCTTCCGCGGCATCCGCCTGGAGGGCTTCTGGCTTT
CCAAGCGTTTGAATCGCATGACCTTGCCACAGCGAACGGCACTCTACGAC
GCGATCAGCGAGATGATCGCACGAAAGACGCTGCAGTTCGAAGTCGATTC
GTCCTTCGCGATGGATGAGATCGCCGCCGCCTTGGCCCGCGCCGAAGAAC
CGGGCCGCAGTGGCAAAGTGATAGTCTCCGTCGCCGGACAATCCGCCTGA
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