mRNA_M-pyrifera_M_contig119149.3940.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119149.3940.1
Unique NamemRNA_M-pyrifera_M_contig119149.3940.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A517WHN3_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517WHN3_9PLAN)

HSP 1 Score: 265 bits (677), Expect = 1.170e-89
Identity = 128/137 (93.43%), Postives = 133/137 (97.08%), Query Frame = 1
Query:    1 MSEQEERQQNISPGARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRATRKPSPTKK--RSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTHSD 405
            MSEQE+RQQNISPGARLVGVVIGCVFGGIGLTLI+FLWSQPFGGFHSPPLFFRIIGSLI+IPFVMVGGFTA+RSLTARGSRLTGVRATRK SP+KK  RSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFN HSD
Sbjct:    1 MSEQEDRQQNISPGARLVGVVIGCVFGGIGLTLITFLWSQPFGGFHSPPLFFRIIGSLISIPFVMVGGFTAFRSLTARGSRLTGVRATRKSSPSKKKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNIHSD 137          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A518AAY3_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AAY3_9PLAN)

HSP 1 Score: 215 bits (548), Expect = 5.270e-70
Identity = 97/136 (71.32%), Postives = 118/136 (86.76%), Query Frame = 1
Query:    1 MSEQEERQQNISPGARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRA-TRKPSPTKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTHSD 405
            M++QEE+Q+NI+ GAR VGVVIGCVFGGIGL ++ FLWS+PFG FHSPPLFFR+ GSLIAIPFV++GGFTA+RSLTA G+ LT V++ + + +P K++  YACPHCNAPIGE+SDVSPHGDVKCSYCK WFN H D
Sbjct:    1 MNDQEEQQKNITAGARFVGVVIGCVFGGIGLLVLGFLWSRPFGAFHSPPLFFRLFGSLIAIPFVLIGGFTAFRSLTATGNGLTRVKSKSSRKTPAKQKRKYACPHCNAPIGEDSDVSPHGDVKCSYCKNWFNIHGD 136          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A6BZM1_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6BZM1_9PLAN)

HSP 1 Score: 181 bits (458), Expect = 2.620e-56
Identity = 80/133 (60.15%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 MSEQEERQQNISPGARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRATRKPSPTKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTH 399
            M+E + +Q+NI+ GARLVG VIGCVF GIGLT++ F+W QPFGGFHSPPLFFR+  S IAIPFVM+GGFTAY +LT +G R    ++         + SY CP CNAP+ +  DVSPHGDVKC YC  WFN H
Sbjct:    1 MNEFDNQQKNIAAGARLVGAVIGCVFAGIGLTVLGFMWVQPFGGFHSPPLFFRVFASFIAIPFVMIGGFTAYCALTGKGLRKGMSKSVHSAMQNSSQGSYTCPKCNAPLSDNIDVSPHGDVKCGYCNSWFNIH 133          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A518IH71_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IH71_9PLAN)

HSP 1 Score: 179 bits (453), Expect = 1.460e-55
Identity = 82/135 (60.74%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 MSEQEERQQNISPGARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRATRKPSPTKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTHSD 405
            M+EQEE Q+NI+ GAR VG VIGCVF GIG+T++ FLW QPFG FHSPPLFFR+ GS IAIPF+ +G FTAY S+ A+G  L      R  S + K  SY CP CNAP+ +  DVSPHGDVKC+YC  WFN H +
Sbjct:    1 MNEQEELQKNITTGARFVGAVIGCVFAGIGVTVLGFLWLQPFGSFHSPPLFFRVFGSFIAIPFIAIGSFTAYSSIKAKGV-LPKANFERSESVSAKSVSYTCPKCNAPLSDNIDVSPHGDVKCNYCNSWFNIHHE 134          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A517VT94_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT94_9PLAN)

HSP 1 Score: 177 bits (449), Expect = 5.950e-55
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 MSEQEERQQNISPGARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRATRKPSPTKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTH 399
            M+EQEE Q+ I+ GA+ VG ++GCVF G+GLT++ FLWSQPFGGFHSPPLFFRI GS +AIPFV +G FTAY+++T++G  L         S   KR +Y CP CNAP+ +  DVSP GDVKC YC  WFN H
Sbjct:    1 MNEQEELQKTITTGAKFVGAIVGCVFAGVGLTVLGFLWSQPFGGFHSPPLFFRIFGSFVAIPFVAIGSFTAYKAITSKGI-LPKSNVMETTSTNTKRGTYTCPKCNAPLSDNIDVSPQGDVKCGYCNSWFNIH 132          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A355GKQ0_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GKQ0_9PLAN)

HSP 1 Score: 176 bits (446), Expect = 1.810e-54
Identity = 83/136 (61.03%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    1 MSEQEERQQNISPGARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRATRKPSPTKKRSS---YACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTH 399
            M+E + +Q+NI+ GAR VGVVIGCVF GIGLT++ F+WSQPFGGF +PPLFFRI  S IAIPFV++GG TAY SLT +G  L   R +++    K+ SS   YACP CNAP+ +  DVSPHGDVKC YC  WFN H
Sbjct:    1 MNELDNQQENIAAGARFVGVVIGCVFAGIGLTVLGFMWSQPFGGFGAPPLFFRIFASFIAIPFVLIGGLTAYSSLTGKG--LKKKRLSKRARSAKRSSSQGTYACPTCNAPLSDNLDVSPHGDVKCEYCSSWFNIH 134          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A517Z289_9PLAN (Uncharacterized protein n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z289_9PLAN)

HSP 1 Score: 119 bits (298), Expect = 4.700e-32
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   61 VIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTAR-GSRLTGVRATRKPSP--------TKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTH 399
            ++G V  GIG+T++ FLWSQPFGGFHSPPLFFR+ GS IA+ FV+ G    + S     G   + V   R   P        T    SY CP+C AP+G+++DVSP GDVKC +C +WFN H
Sbjct:    6 LMGIVPLGIGITVLFFLWSQPFGGFHSPPLFFRVFGSFIALAFVLQGAAFLFASPEKHLGKMRSMVERMRHQMPHDLPQADDTPAGGSYGCPNCGAPLGDDADVSPSGDVKCPHCSRWFNIH 127          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: F0SRM5_RUBBR (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=F0SRM5_RUBBR)

HSP 1 Score: 112 bits (280), Expect = 3.340e-29
Identity = 58/129 (44.96%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   40 GARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRATRKPSPTKKRSSYA---------CPHCNAPIGEESDVSPHGDVKCSYCKKWFNTH 399
            G R++    G  FGGIGL+++  +W  PFG FHSPPLFFR+  S IAIPFV VG  + Y ++T  G  L G+R   + + T    S+          CP C APIG+ +++SP GDVKC +C  WFN H
Sbjct:   10 GPRIIAGAFGLAFGGIGLSVLIGMWVAPFGAFHSPPLFFRVFASFIAIPFVAVGFGSLYGAVT--GMPLNGMREKFRHTSTIHPGSHTRQRGPMQTECPKCAAPIGD-AEISPSGDVKCVHCNSWFNVH 135          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A1I3H3E4_9PLAN (Uncharacterized protein n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3H3E4_9PLAN)

HSP 1 Score: 110 bits (274), Expect = 1.870e-28
Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   61 VIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAYRSLT------ARGSRLTGVRATRKPSPTKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTHS 402
            ++G V  GIG+T++ FLW  PF  FHSPPLFFRI  S IA+ F++ GG      L       +  S+L    +  +   T  +  Y C HC AP+   +DVSPHGDVKC +C KWFN H+
Sbjct:    6 LMGIVPLGIGITVLGFLWLTPFNEFHSPPLFFRIFASFIALGFILQGGAMVSGKLLDPKQWQSVASQLKQFDSNSEQQTTPAQKGYVCQHCGAPLAANADVSPHGDVKCGHCGKWFNIHA 125          
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Match: A0A177RB69_9PLAN (GATA-type domain-containing protein n=1 Tax=Planctomyces sp. SCGC AG-212-M04 TaxID=1799657 RepID=A0A177RB69_9PLAN)

HSP 1 Score: 109 bits (272), Expect = 5.130e-28
Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   61 VIGCVFGGIGLTLISFLWSQPFGGFHSPPLFFRIIGSLIAIPFVMVGGFTAY-------------RSLTARGSRLTGVR-------ATRKPSPTKKRSSYACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTH 399
            +IG V  GIGLT I+F WS  FGGF   P+FFR+  S IA+ F+++GG   +             ++L  R     G+R         +K +P      Y CP CNAPIG  +DVSPHGDVKC +C +WFN H
Sbjct:    4 LIGIVPLGIGLTTITFAWSNEFGGFGQVPIFFRLFTSFIALGFILIGGTILFAGGGLMPPQQLIDKALDLRQQMEAGMRERGMTPPGEQKQAPPMTSEGYVCPSCNAPIGTNADVSPHGDVKCGHCGRWFNVH 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119149.3940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A517WHN3_9PLAN1.170e-8993.43Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518AAY3_9PLAN5.270e-7071.32Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A6BZM1_9PLAN2.620e-5660.15Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A518IH71_9PLAN1.460e-5560.74Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517VT94_9PLAN5.950e-5558.65Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A355GKQ0_9PLAN1.810e-5461.03Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517Z289_9PLAN4.700e-3248.36Uncharacterized protein n=1 Tax=Maioricimonas rari... [more]
F0SRM5_RUBBR3.340e-2944.96Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A1I3H3E4_9PLAN1.870e-2844.17Uncharacterized protein n=1 Tax=Planctomicrobium p... [more]
A0A177RB69_9PLAN5.130e-2842.11GATA-type domain-containing protein n=1 Tax=Planct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119149contigM-pyrifera_M_contig119149:119..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.5940597-CDS-M-pyrifera_M_contig119149:118..5261622815710.5940597-CDS-M-pyrifera_M_contig119149:118..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119149 119..526 -
1692277533.3126493-CDS-M-pyrifera_M_contig119149:118..5261692277533.3126493-CDS-M-pyrifera_M_contig119149:118..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119149 119..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119149.3940.1prot_M-pyrifera_M_contig119149.3940.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119149 119..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119149.3940.1

>prot_M-pyrifera_M_contig119149.3940.1 ID=prot_M-pyrifera_M_contig119149.3940.1|Name=mRNA_M-pyrifera_M_contig119149.3940.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MSEQEERQQNISPGARLVGVVIGCVFGGIGLTLISFLWSQPFGGFHSPPL
FFRIIGSLIAIPFVMVGGFTAYRSLTARGSRLTGVRATRKPSPTKKRSSY
ACPHCNAPIGEESDVSPHGDVKCSYCKKWFNTHSD*
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mRNA from alignment at M-pyrifera_M_contig119149:119..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119149.3940.1 ID=mRNA_M-pyrifera_M_contig119149.3940.1|Name=mRNA_M-pyrifera_M_contig119149.3940.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig119149:119..526- (Macrocystis pyrifera P11B4 male)
ATGAGCGAGCAGGAAGAGCGCCAGCAGAATATTTCACCGGGAGCCCGTCT GGTCGGGGTCGTGATTGGCTGTGTCTTTGGCGGAATTGGTCTGACTCTGA TTTCTTTTCTGTGGTCTCAGCCCTTCGGGGGATTCCATTCACCGCCTCTG TTTTTTCGCATTATTGGTTCGTTGATAGCGATTCCCTTTGTGATGGTCGG TGGCTTTACGGCTTACAGGTCACTTACCGCCAGGGGCAGCCGTCTGACGG GTGTCAGGGCAACCCGGAAACCATCCCCTACCAAGAAACGCAGCAGCTAT GCCTGCCCGCACTGCAATGCGCCGATTGGGGAAGAGTCGGACGTCTCACC TCATGGGGATGTGAAGTGCAGTTACTGTAAAAAGTGGTTTAATACTCACA GTGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119149:119..526-

>mRNA_M-pyrifera_M_contig119149.3940.1 ID=mRNA_M-pyrifera_M_contig119149.3940.1|Name=mRNA_M-pyrifera_M_contig119149.3940.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig119149:119..526- (Macrocystis pyrifera P11B4 male)
ATGAGCGAGCAGGAAGAGCGCCAGCAGAATATTTCACCGGGAGCCCGTCT
GGTCGGGGTCGTGATTGGCTGTGTCTTTGGCGGAATTGGTCTGACTCTGA
TTTCTTTTCTGTGGTCTCAGCCCTTCGGGGGATTCCATTCACCGCCTCTG
TTTTTTCGCATTATTGGTTCGTTGATAGCGATTCCCTTTGTGATGGTCGG
TGGCTTTACGGCTTACAGGTCACTTACCGCCAGGGGCAGCCGTCTGACGG
GTGTCAGGGCAACCCGGAAACCATCCCCTACCAAGAAACGCAGCAGCTAT
GCCTGCCCGCACTGCAATGCGCCGATTGGGGAAGAGTCGGACGTCTCACC
TCATGGGGATGTGAAGTGCAGTTACTGTAAAAAGTGGTTTAATACTCACA
GTGACTGAATGAGCGAGCAGGAAGAGCGCCAGCAGAATATTTCACCGGGA
GCCCGTCTGGTCGGGGTCGTGATTGGCTGTGTCTTTGGCGGAATTGGTCT
GACTCTGATTTCTTTTCTGTGGTCTCAGCCCTTCGGGGGATTCCATTCAC
CGCCTCTGTTTTTTCGCATTATTGGTTCGTTGATAGCGATTCCCTTTGTG
ATGGTCGGTGGCTTTACGGCTTACAGGTCACTTACCGCCAGGGGCAGCCG
TCTGACGGGTGTCAGGGCAACCCGGAAACCATCCCCTACCAAGAAACGCA
GCAGCTATGCCTGCCCGCACTGCAATGCGCCGATTGGGGAAGAGTCGGAC
GTCTCACCTCATGGGGATGTGAAGTGCAGTTACTGTAAAAAGTGGTTTAA
TACTCACAGTGACTGA
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