mRNA_M-pyrifera_M_contig119148.3939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119148.3939.1
Unique NamemRNA_M-pyrifera_M_contig119148.3939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119148.3939.1 vs. uniprot
Match: UPI0018870C75 (taste receptor type 1 member 3 n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI0018870C75)

HSP 1 Score: 58.9 bits (141), Expect = 5.520e-8
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:    1 SKIIATLGPRTSPTLETLLPVLQNRMMPVLSYSATASSFSSA---PNVVRVVSSDYYQAEAIVALAKAAGWRRIAIVGSSDAYGQAGVADVSLFARKENIDV 297
            + I A +GP TS     +  +L   +MP +S+ AT+  FS+    P+  R V SD +Q EA+V L K   W  +A+VGS + YG+AGV + S  A   +I V
Sbjct:  161 TSISAVIGPLTSEMTSVIGKLLGFFLMPQVSFGATSDKFSNKLLYPSFFRTVPSDKWQVEAMVWLLKRFNWNWVAVVGSEEEYGKAGVQEFSKLAENTSICV 262
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BLAST of mRNA_M-pyrifera_M_contig119148.3939.1 vs. uniprot
Match: G3NXI0_GASAC (Taste receptor, type 1, member 3 n=3 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3NXI0_GASAC)

HSP 1 Score: 55.1 bits (131), Expect = 1.250e-6
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:    1 SKIIATLGPRTSPTLETLLPVLQNRMMPVLSYSATASSFSSA---PNVVRVVSSDYYQAEAIVALAKAAGWRRIAIVGSSDAYGQAGVADVSLFARKENIDV 297
            + I A +GP +S  +  +  +L   +MP +S+ AT+  FS+    P+  R V SD +Q  A+V L +   W  +A+VGS + YG+AGV + S  A   +I V
Sbjct:  140 TSISAVIGPLSSEMVSVIGKLLGFFLMPQVSFGATSDKFSNKLLYPSFFRTVPSDKWQVAAMVELLERFAWNWVAVVGSEEEYGKAGVQEFSKLAENTSICV 241
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BLAST of mRNA_M-pyrifera_M_contig119148.3939.1 vs. uniprot
Match: A0A834HXS2_RHYFE (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834HXS2_RHYFE)

HSP 1 Score: 51.6 bits (122), Expect = 2.070e-5
Identity = 32/98 (32.65%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:    7 IIATLGPRTSPTLETLLPVLQNRMMPVLSYSATASSFSSAPNV---VRVVSSDYYQAEAIVALAKAAGWRRIAIVGSSDAYGQAGVADVSLFARKENI 291
            +I  +GP +S     +  +LQ   +P + YS T+S  S        +RVV SDYYQA+ I+ + K  GW  +++V +++ YGQ+G+      A K  +
Sbjct:  142 LIGVIGPGSSSVALQVQNLLQLFHIPQVGYSTTSSDLSDKSRFNYFLRVVPSDYYQAQVILDILKDFGWTYVSVVNTNENYGQSGIQSFRELAEKVGV 239
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119148.3939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0018870C755.520e-838.24taste receptor type 1 member 3 n=1 Tax=Pungitius p... [more]
G3NXI0_GASAC1.250e-635.29Taste receptor, type 1, member 3 n=3 Tax=Gasterost... [more]
A0A834HXS2_RHYFE2.070e-532.65G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119148contigM-pyrifera_M_contig119148:4..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.0
Seed ortholog evalue5.6e-09
Seed eggNOG ortholog7918.ENSLOCP00000004765
Preferred nametas1r3
KEGG koko:K04626
KEGG Pathwayko04742,ko04973,map04742,map04973
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Taste receptor, type 1, member
EggNOG OGs38FP6@33154,3B98Y@33208,3D2CZ@33213,486QN@7711,494V9@7742,49UY0@7898,KOG1056@1,KOG1056@2759
COG Functional cat.T
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.5362766-CDS-M-pyrifera_M_contig119148:3..3001622815710.5362766-CDS-M-pyrifera_M_contig119148:3..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119148 4..300 -
1692277533.3010314-CDS-M-pyrifera_M_contig119148:3..3001692277533.3010314-CDS-M-pyrifera_M_contig119148:3..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119148 4..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119148.3939.1prot_M-pyrifera_M_contig119148.3939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119148 4..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119148.3939.1

>prot_M-pyrifera_M_contig119148.3939.1 ID=prot_M-pyrifera_M_contig119148.3939.1|Name=mRNA_M-pyrifera_M_contig119148.3939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
SKIIATLGPRTSPTLETLLPVLQNRMMPVLSYSATASSFSSAPNVVRVVS
SDYYQAEAIVALAKAAGWRRIAIVGSSDAYGQAGVADVSLFARKENIDV
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mRNA from alignment at M-pyrifera_M_contig119148:4..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119148.3939.1 ID=mRNA_M-pyrifera_M_contig119148.3939.1|Name=mRNA_M-pyrifera_M_contig119148.3939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig119148:4..300- (Macrocystis pyrifera P11B4 male)
AGCAAGATCATTGCAACATTGGGGCCTCGTACATCTCCTACACTTGAAAC
TCTCTTACCAGTTCTTCAAAATCGAATGATGCCAGTGTTGTCGTACTCAG
CAACGGCCTCATCGTTTTCATCCGCTCCAAATGTCGTGAGGGTGGTTTCA
AGTGATTATTATCAAGCAGAAGCAATTGTTGCCCTGGCAAAAGCAGCAGG
GTGGCGTAGAATTGCCATTGTCGGAAGCAGCGATGCATATGGACAAGCAG
GTGTTGCAGATGTGTCACTCTTCGCTCGCAAAGAGAATATTGATGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119148:4..300-

>mRNA_M-pyrifera_M_contig119148.3939.1 ID=mRNA_M-pyrifera_M_contig119148.3939.1|Name=mRNA_M-pyrifera_M_contig119148.3939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig119148:4..300- (Macrocystis pyrifera P11B4 male)
AGCAAGATCATTGCAACATTGGGGCCTCGTACATCTCCTACACTTGAAAC
TCTCTTACCAGTTCTTCAAAATCGAATGATGCCAGTGTTGTCGTACTCAG
CAACGGCCTCATCGTTTTCATCCGCTCCAAATGTCGTGAGGGTGGTTTCA
AGTGATTATTATCAAGCAGAAGCAATTGTTGCCCTGGCAAAAGCAGCAGG
GTGGCGTAGAATTGCCATTGTCGGAAGCAGCGATGCATATGGACAAGCAG
GTGTTGCAGATGTGTCACTCTTCGCTCGCAAAGAGAATATTGATGTCAGC
AAGATCATTGCAACATTGGGGCCTCGTACATCTCCTACACTTGAAACTCT
CTTACCAGTTCTTCAAAATCGAATGATGCCAGTGTTGTCGTACTCAGCAA
CGGCCTCATCGTTTTCATCCGCTCCAAATGTCGTGAGGGTGGTTTCAAGT
GATTATTATCAAGCAGAAGCAATTGTTGCCCTGGCAAAAGCAGCAGGGTG
GCGTAGAATTGCCATTGTCGGAAGCAGCGATGCATATGGACAAGCAGGTG
TTGCAGATGTGTCACTCTTCGCTCGCAAAGAGAATATTGATGTC
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