mRNA_M-pyrifera_M_contig119126.3932.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119126.3932.1
Unique NamemRNA_M-pyrifera_M_contig119126.3932.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119126.3932.1 vs. uniprot
Match: A0A7X5WU23_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WU23_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 2.580e-21
Identity = 52/99 (52.53%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:   28 PYPGYPIVAVYDPVVDPPGPLVTTPTVARFALDSIDFARPEIITSPADTHVVGVPSWFAVASELDYEPASAQAGPVWATVRPVFRDVVWALGDETQLVC 324
            P PGYP+ AVY    + PG +V+T   ARFALDSI   RP +  +P    VVGV +   V S LDY PASA+AGPVWATV PVF  V W  G+   +VC
Sbjct:  102 PLPGYPVPAVYGER-ELPGAVVSTGEAARFALDSIGLQRPAVRLTPPGRQVVGVHTDLEVVSRLDYPPASAEAGPVWATVVPVFGSVEWQPGNGDTVVC 199
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BLAST of mRNA_M-pyrifera_M_contig119126.3932.1 vs. uniprot
Match: A0A3C0HSN1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HSN1_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 4.920e-14
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:    1 CWYS-SPWVDPYPGYPIVAVYDPVVDP--PGP-LVTTPTVARFALDSIDFARPEIITSPADTHVVGVPSWFAVASELDYEPASAQAGPVWATVRPVFRDVVWALGDETQ-LVC 324
            CW + SP +   PG+P    +DP   P  P P +V  P +  +A  ++ F +     SP     VGVP+W AV SE +Y P +A AGP+WATVRP FR+V W +GD +  +VC
Sbjct:   65 CWVAGSPTL--LPGFP--RFFDPPQPPFPPAPDVVEEPRLEIYAHRTLQFEQAVAEMSPPVDQFVGVPTWLAVTSEREYAPITANAGPLWATVRPEFRNVRWDMGDGSPPIVC 173
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BLAST of mRNA_M-pyrifera_M_contig119126.3932.1 vs. uniprot
Match: A0A2D8GF50_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GF50_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-13
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 CWYS-SPWVDPYPGYPIVAVYDPVVDP--PGP-LVTTPTVARFALDSIDFARPEIITSPADTHVVGVPSWFAVASELDYEPASAQAGPVWATVRPVFRDVVWALGDETQ-LVC 324
            CW + SP +   PG+P    +DP   P  P P +V  P +  +A  +++F +     SP     VGVP+W AV SE +Y P +A AGP+WATVRP FR+V W +GD +  +VC
Sbjct:  110 CWVAGSPTL--LPGFP--RFFDPPQPPFPPAPDVVEEPRLEIYAHRALEFEQAIAGLSPPVDQFVGVPTWLAVTSEREYAPITANAGPLWATVRPEFRNVRWDMGDGSPPIVC 218
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BLAST of mRNA_M-pyrifera_M_contig119126.3932.1 vs. uniprot
Match: A0A2D8LTE5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LTE5_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 8.240e-13
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:  127 SIDFARPEIITSPADTHVVGVPSWFAVASELDYEPASAQAGPVWATVRPVFRDVVWALGDETQ-LVC 324
            +++F R     SP     VGVP+W AV SE +Y P +A AGP+WATVRP FR+V W +GD +  +VC
Sbjct:    1 ALEFERAITGLSPPVDQFVGVPTWLAVTSEREYAPITANAGPLWATVRPEFRNVRWDMGDGSPPIVC 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119126.3932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X5WU23_9ACTN2.580e-2152.53Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A3C0HSN1_9ACTN4.920e-1441.59Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2D8GF50_9ACTN1.060e-1341.59Uncharacterized protein n=3 Tax=Acidimicrobiaceae ... [more]
A0A2D8LTE5_9ACTN8.240e-1349.25Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119126contigM-pyrifera_M_contig119126:27..353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.2544103-CDS-M-pyrifera_M_contig119126:26..3531622815710.2544103-CDS-M-pyrifera_M_contig119126:26..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119126 27..353 -
1692277533.1915698-CDS-M-pyrifera_M_contig119126:26..3531692277533.1915698-CDS-M-pyrifera_M_contig119126:26..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119126 27..353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119126.3932.1prot_M-pyrifera_M_contig119126.3932.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119126 27..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119126.3932.1

>prot_M-pyrifera_M_contig119126.3932.1 ID=prot_M-pyrifera_M_contig119126.3932.1|Name=mRNA_M-pyrifera_M_contig119126.3932.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
CWYSSPWVDPYPGYPIVAVYDPVVDPPGPLVTTPTVARFALDSIDFARPE
IITSPADTHVVGVPSWFAVASELDYEPASAQAGPVWATVRPVFRDVVWAL
GDETQLVCT
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mRNA from alignment at M-pyrifera_M_contig119126:27..353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119126.3932.1 ID=mRNA_M-pyrifera_M_contig119126.3932.1|Name=mRNA_M-pyrifera_M_contig119126.3932.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig119126:27..353- (Macrocystis pyrifera P11B4 male)
TGCTGGTACTCCTCGCCCTGGGTCGACCCGTATCCCGGCTATCCGATCGT
GGCGGTCTACGACCCCGTCGTCGATCCTCCCGGCCCGCTCGTCACCACTC
CCACGGTCGCTCGCTTCGCGCTCGACAGCATCGACTTCGCACGTCCCGAG
ATCATCACCTCCCCGGCCGACACCCATGTCGTCGGTGTGCCGTCATGGTT
CGCCGTGGCCAGCGAGCTCGACTACGAGCCGGCGTCGGCCCAGGCGGGCC
CGGTGTGGGCCACCGTGCGGCCGGTGTTTCGCGATGTCGTGTGGGCACTG
GGCGACGAGACCCAGCTCGTGTGCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119126:27..353-

>mRNA_M-pyrifera_M_contig119126.3932.1 ID=mRNA_M-pyrifera_M_contig119126.3932.1|Name=mRNA_M-pyrifera_M_contig119126.3932.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig119126:27..353- (Macrocystis pyrifera P11B4 male)
TGCTGGTACTCCTCGCCCTGGGTCGACCCGTATCCCGGCTATCCGATCGT
GGCGGTCTACGACCCCGTCGTCGATCCTCCCGGCCCGCTCGTCACCACTC
CCACGGTCGCTCGCTTCGCGCTCGACAGCATCGACTTCGCACGTCCCGAG
ATCATCACCTCCCCGGCCGACACCCATGTCGTCGGTGTGCCGTCATGGTT
CGCCGTGGCCAGCGAGCTCGACTACGAGCCGGCGTCGGCCCAGGCGGGCC
CGGTGTGGGCCACCGTGCGGCCGGTGTTTCGCGATGTCGTGTGGGCACTG
GGCGACGAGACCCAGCTCGTGTGCACCTGCTGGTACTCCTCGCCCTGGGT
CGACCCGTATCCCGGCTATCCGATCGTGGCGGTCTACGACCCCGTCGTCG
ATCCTCCCGGCCCGCTCGTCACCACTCCCACGGTCGCTCGCTTCGCGCTC
GACAGCATCGACTTCGCACGTCCCGAGATCATCACCTCCCCGGCCGACAC
CCATGTCGTCGGTGTGCCGTCATGGTTCGCCGTGGCCAGCGAGCTCGACT
ACGAGCCGGCGTCGGCCCAGGCGGGCCCGGTGTGGGCCACCGTGCGGCCG
GTGTTTCGCGATGTCGTGTGGGCACTGGGCGACGAGACCCAGCTCGTGTG
CACC
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