mRNA_M-pyrifera_M_contig119119.3930.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119119.3930.1
Unique NamemRNA_M-pyrifera_M_contig119119.3930.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: Q0BCY0_BURCM (AAA domain protein n=74 Tax=Burkholderiaceae TaxID=119060 RepID=Q0BCY0_BURCM)

HSP 1 Score: 55.1 bits (131), Expect = 6.540e-7
Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    4 GGDEPVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
            G   PVFFDRG  D + Y R+ G AVPA  E A +   Y R + +           + R  + + ++    A+ D YT +G + IELP +S++AR+   + AL
Sbjct:   88 GARGPVFFDRGVPDVIGYLRLTGLAVPAHAEAAARRFRYHRRVFIAPPWPEIYTQDAERRQDFDEAVRTYDAMVDCYTAYGYRLIELPRVSVKARVRFVMDAL 190          
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: B1YUE0_BURA4 (ATPase-like protein n=9 Tax=Burkholderia TaxID=32008 RepID=B1YUE0_BURA4)

HSP 1 Score: 53.5 bits (127), Expect = 2.460e-6
Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1
Query:   16 PVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
            PVFFDRG  D + Y R+ G AVPA  E A +   Y R + +           + R  +   ++    A+ D YT +G + IELP +S++AR+   + AL
Sbjct:   92 PVFFDRGVPDVIGYLRLTGLAVPAHAEAAARRFRYHRRVFIAPPWPEIYAQDAERRQDFAEAVRTYDAMVDCYTAYGYRLIELPRVSVKARVRFVMDAL 190          
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: A2VWD7_9BURK (AAA_28 domain-containing protein n=28 Tax=Burkholderiaceae TaxID=119060 RepID=A2VWD7_9BURK)

HSP 1 Score: 51.6 bits (122), Expect = 1.430e-5
Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 1
Query:   16 PVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
            PVFFDRG  D + Y ++ G AVPA  E A +   Y R + +           + R  +   ++    A+ D YT +G + IELP +S++AR+   +  L
Sbjct:  103 PVFFDRGVPDVIGYLKLTGLAVPAHAEAAARRFRYHRRVFIAPPWPDIYAQDAERRQDFAEAVRTHDAMVDCYTSYGYRLIELPRVSVKARVRFVMDTL 201          
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: B4E737_BURCJ (AAA_28 domain-containing protein n=99 Tax=Burkholderiaceae TaxID=119060 RepID=B4E737_BURCJ)

HSP 1 Score: 51.2 bits (121), Expect = 1.620e-5
Identity = 32/99 (32.32%), Postives = 50/99 (50.51%), Query Frame = 1
Query:   16 PVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAAL 312
            PVFFDRG  D + Y ++ G  VPA  E A +   Y R + +           + R  +   ++    A+ D YT +G + IELP +S++AR+   + AL
Sbjct:   83 PVFFDRGVPDVIGYLKLTGLTVPAHAEAAARRFRYHRRVFIAPPWPDIYAQDTERRQDFAEAVRTYDAMVDCYTSYGYRLIELPRVSVKARVRFVMDAL 181          
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: A0A2N2YD43_9BACT (ATPase n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-2 TaxID=2013688 RepID=A0A2N2YD43_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.180e-5
Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1
Query:   19 VFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATL 303
            VF+DRG  D VAY   + +  P   + AC+  PY  V +L        +    R  N E +  I   L   Y  +   PIE+P ++LEAR+E  L
Sbjct:   81 VFYDRGMHDVVAYLDYFQTEYPKGFQNACKQHPYDLVFILPPWEEIYIQDNE-RYENFEEAKKIHNYLERTYKNYAYIPIEVPRLTLEARVEFIL 174          
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: UPI000E1D3019 (ATP-binding protein n=1 Tax=Winogradskyella aurantiaca TaxID=2219558 RepID=UPI000E1D3019)

HSP 1 Score: 49.3 bits (116), Expect = 7.890e-5
Identity = 33/100 (33.00%), Postives = 47/100 (47.00%), Query Frame = 1
Query:   19 VFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATLAALRI 318
            VF+DRG  D +AY    G   P      CQ+  Y  V++L+   R   R    R    E++L I   L D Y  +G    ELPE S+  R++  L +L +
Sbjct:   80 VFYDRGIPDVLAYMDYIGDTYPQEFIDQCQNHRYDSVIILNPWKRIYSRDGE-RYETFEQALQIHRHLVDTYKHYGYALTELPEDSVNNRIQILLDSLNL 178          
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Match: UPI001CCCEF1B (ATP-binding protein n=1 Tax=Robertkochia sp. 3YJGBD-33 TaxID=2873700 RepID=UPI001CCCEF1B)

HSP 1 Score: 49.3 bits (116), Expect = 7.980e-5
Identity = 34/97 (35.05%), Postives = 44/97 (45.36%), Query Frame = 1
Query:   13 EPVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLSRFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEATL 303
            +PVFFDRG  D VAY    G   P    + C+   Y  V LL       R S S R  N E++  I   L   Y   G   +E+P+ S+  R+E  L
Sbjct:   81 DPVFFDRGIPDVVAYLDYIGDEYPDWFSEPCKVFRYDTVFLLPPWEDIYR-SDSERYENYEQASLIHDHLEKTYKRFGYNLLEVPKDSVSQRIEFIL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119119.3930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q0BCY0_BURCM6.540e-733.98AAA domain protein n=74 Tax=Burkholderiaceae TaxID... [more]
B1YUE0_BURA42.460e-634.34ATPase-like protein n=9 Tax=Burkholderia TaxID=320... [more]
A2VWD7_9BURK1.430e-532.32AAA_28 domain-containing protein n=28 Tax=Burkhold... [more]
B4E737_BURCJ1.620e-532.32AAA_28 domain-containing protein n=99 Tax=Burkhold... [more]
A0A2N2YD43_9BACT2.180e-533.68ATPase n=1 Tax=Bacteroidetes bacterium HGW-Bactero... [more]
UPI000E1D30197.890e-533.00ATP-binding protein n=1 Tax=Winogradskyella aurant... [more]
UPI001CCCEF1B7.980e-535.05ATP-binding protein n=1 Tax=Robertkochia sp. 3YJGB... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119119contigM-pyrifera_M_contig119119:208..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.1739774-CDS-M-pyrifera_M_contig119119:207..5281622815710.1739774-CDS-M-pyrifera_M_contig119119:207..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119119 208..528 -
1692277533.1642303-CDS-M-pyrifera_M_contig119119:207..5281692277533.1642303-CDS-M-pyrifera_M_contig119119:207..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119119 208..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119119.3930.1prot_M-pyrifera_M_contig119119.3930.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119119 208..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119119.3930.1

>prot_M-pyrifera_M_contig119119.3930.1 ID=prot_M-pyrifera_M_contig119119.3930.1|Name=mRNA_M-pyrifera_M_contig119119.3930.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
AGGDEPVFFDRGRLDGVAYCRIYGSAVPAPLEQACQSLPYTRVLLLDTLS
RFERRSQSGRTSNRERSLAIKAALRDVYTEHGLKPIELPEMSLEARLEAT
LAALRI*
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mRNA from alignment at M-pyrifera_M_contig119119:208..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119119.3930.1 ID=mRNA_M-pyrifera_M_contig119119.3930.1|Name=mRNA_M-pyrifera_M_contig119119.3930.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig119119:208..528- (Macrocystis pyrifera P11B4 male)
GCCGGCGGCGACGAGCCGGTCTTCTTCGACCGCGGCCGCCTGGACGGCGT CGCCTACTGCCGCATCTACGGTAGCGCCGTCCCCGCCCCCCTCGAACAGG CCTGCCAGTCGCTCCCGTACACCCGCGTGCTCCTGCTCGACACCCTCAGC CGCTTCGAACGCCGCAGCCAGAGCGGCCGCACCAGCAACCGCGAGCGCAG CCTGGCGATCAAGGCCGCCCTGCGCGACGTCTACACCGAGCACGGCCTGA AGCCGATCGAGCTCCCCGAGATGAGCCTGGAAGCGCGCCTCGAAGCCACG CTGGCGGCGCTGCGGATCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119119:208..528-

>mRNA_M-pyrifera_M_contig119119.3930.1 ID=mRNA_M-pyrifera_M_contig119119.3930.1|Name=mRNA_M-pyrifera_M_contig119119.3930.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig119119:208..528- (Macrocystis pyrifera P11B4 male)
GCCGGCGGCGACGAGCCGGTCTTCTTCGACCGCGGCCGCCTGGACGGCGT
CGCCTACTGCCGCATCTACGGTAGCGCCGTCCCCGCCCCCCTCGAACAGG
CCTGCCAGTCGCTCCCGTACACCCGCGTGCTCCTGCTCGACACCCTCAGC
CGCTTCGAACGCCGCAGCCAGAGCGGCCGCACCAGCAACCGCGAGCGCAG
CCTGGCGATCAAGGCCGCCCTGCGCGACGTCTACACCGAGCACGGCCTGA
AGCCGATCGAGCTCCCCGAGATGAGCCTGGAAGCGCGCCTCGAAGCCACG
CTGGCGGCGCTGCGGATCTAGGCCGGCGGCGACGAGCCGGTCTTCTTCGA
CCGCGGCCGCCTGGACGGCGTCGCCTACTGCCGCATCTACGGTAGCGCCG
TCCCCGCCCCCCTCGAACAGGCCTGCCAGTCGCTCCCGTACACCCGCGTG
CTCCTGCTCGACACCCTCAGCCGCTTCGAACGCCGCAGCCAGAGCGGCCG
CACCAGCAACCGCGAGCGCAGCCTGGCGATCAAGGCCGCCCTGCGCGACG
TCTACACCGAGCACGGCCTGAAGCCGATCGAGCTCCCCGAGATGAGCCTG
GAAGCGCGCCTCGAAGCCACGCTGGCGGCGCTGCGGATCTAG
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