mRNA_M-pyrifera_M_contig119112.3928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119112.3928.1
Unique NamemRNA_M-pyrifera_M_contig119112.3928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: K3WQ01_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ01_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 1.660e-14
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1
Query:    1 VDILWIPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTERNSR-GVPHRCVAASLTAVCVLVFF 459
            + I +  L++ L+W F+G    +  G E+ +P  T P A+ +S++    +Y +PL  A   ++ P W SW +GS S ++ A+        ++  +      MY++E   D++ + GMAE GL P  L  RN R   PH  + ASL  +  L+ F
Sbjct:  256 ISIDFSLLINTLFWNFNGAVSCSVFGAEVANPGKTYPRAMTISVVLIALSYLVPLFGATAYNS-PHWTSWEEGSLSGVSQAIGGDFLANWIVFATFCSNAGMYIAELFCDSFQILGMAECGLAPKFLQNRNKRFDTPHNAILASLVIILFLIKF 408          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: A0A6U0U068_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0U068_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.700e-14
Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:    4 DILWIPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAA-GVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTERNSRGVPHRCVAASLTAVCVL 450
            D+ W  L++ L+W ++ FD  ++  G+++ PR T P A++ +LL    TY LP +AA     AP    + DG F+ +A+ V    A G  +LA +      ++++E   DA+ + G+AE G+LPSAL  R+  G P   +A  L+AV V+
Sbjct:  234 DVDWRTLVNVLFWNYNYFDSSSAWAGDVQGPR-TFPVAMVYALLIIFLTYLLPTLAAT--GTAPRDADYCDGCFTNLANNVAGGTALGYWILAAAAISCIGLFIAEMSSDAFQLMGLAERGILPSALARRSKYGTPT--IATLLSAVGVV 378          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: A0A6G0X1Z4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1Z4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.810e-14
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   13 WIPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVA-----GGFCMYVSETLGDAYTMCGMAETGLLPSALTERN-SRGVPHRCV 420
            W  L+S L+W F GFD + +  GEI +P+A    A+LLSL   +ATY LPL+AAA  +  P + +WTDG F  IA  +     G A LA  VA       F +Y  E+  + + + GMA+ G  P     R+ + G P R +
Sbjct:  187 WTQLISLLFWNFRGFDAMGAYAGEIHNPQANFHRAMLLSLFMISATYMLPLLAAAAVNK-PNYTTWTDGEFPTIAQFI-----GGAWLARWVAISNGVSSFGLYFVESTANGFRLTGMADIGFAPRWFMLRDEATGCPRRSI 322          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: A0A6V7QRK3_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7QRK3_ANACO)

HSP 1 Score: 63.5 bits (153), Expect = 5.000e-9
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   13 WIPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTER 390
            W    + L+W  + +D  +++ GE++ P  T P AL +S++ T+ +Y LPL+A      APP  +W DG F+  A  +        + AG+V     +Y ++    A+ + GMA+ GLLP     R
Sbjct:   56 WRLFFNTLFWNLNFWDSASTMAGEVERPETTFPRALGVSVVVTSLSYLLPLMAGMGVLDAPP-SAWDDGFFADAAGRIAGRWLKYWIEAGAVLSTIGLYEAQLSSGAFQLMGMADLGLLPRFFAHR 180          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: A0A199UD66_ANACO (Putative polyamine transporter n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UD66_ANACO)

HSP 1 Score: 63.2 bits (152), Expect = 9.640e-9
Identity = 39/126 (30.95%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   13 WIPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTER 390
            W    + L+W  + +D  +++ GE++ P  T P AL +S++ T+ +Y LPL+A      APP  +W DG F+  A  +        + AG+V     +Y ++    A+ + GMA+ GLLP     R
Sbjct:  214 WRLFFNTLFWNLNFWDSASTMAGEVERPETTFPRALGVSVVMTSLSYLLPLMAGMGVLDAPP-SAWDDGFFADAAGRIAGRWLKYWIEAGAVLSTIGLYEAQLSSGAFQLMGMADLGLLPRFFARR 338          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: A0A368T7N2_9ACTN (Amino acid permease n=1 Tax=Marinitenerispora sediminis TaxID=1931232 RepID=A0A368T7N2_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 5.900e-8
Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   34 LYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTERNSR-GVPHRCVAASLTAVCVLV 453
            L++AF+G+  VA+LGGE++ PR T+P A+ +++    A Y L +    +A   P  ++ +    +   +A   P     V AG+        +S +LG + T+  +A+ G LP ALT  + R GVPHR   A    V VLV
Sbjct:  197 LFFAFAGYARVATLGGEVRDPRRTIPRAIGIAVAVALAVYLL-VCGTVLAVLGPRALAASTAPLADAVAAAGWPQLTPLVAAGAALACLGALLSLSLGVSRTVLALAQDGHLPRALTGLHPRHGVPHRAALAVGAVVAVLV 336          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: A0A0D6QV65_ARACU (Uncharacterized protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QV65_ARACU)

HSP 1 Score: 59.7 bits (143), Expect = 1.540e-7
Identity = 39/148 (26.35%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   13 WIPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTERNSRGVPHRCVAASLTAVCVLVF 456
            W    + L+W  + +D+ ++L GE++ P+ T P ALL + +     Y +PL+AA  A      + W+DG  +  A  +        +  G+V     ++ ++    ++ + GMAE G+LPSA+ +R+S   P   +  S     +L +
Sbjct:  221 WSLFFNTLFWNLNFWDNASTLAGEVEHPQRTFPRALLCAGVLACLGYIVPLLAATGALPLDRGL-WSDGFLADAAGLIAGAWLKYGIELGAVLSTVGLFEAQLSSASFQLLGMAEIGILPSAMAKRSSYNTPFMGILFSAGGTLLLSY 367          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: UPI001E3CF21D (amino acid permease n=1 Tax=Mycobacterium sp. MYCO198283 TaxID=2883505 RepID=UPI001E3CF21D)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-6
Identity = 48/154 (31.17%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   13 WIPLL---SALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATY-ALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTERNSRGVPHRC--VAASLTAVCVLVF 456
            W  LL   S +++AF GFD VA+   E+K+P+  +P  +L SL   T  Y A+ LV + +        +  D + +   SAV    A   +  G++AG   + +   LG    +  M+  GLLP +L +  SRG P R   +   + AV   VF
Sbjct:  239 WYGLLAGASIVFFAFIGFDIVATTAEEVKNPQRDVPRGILASLAIVTVLYVAVALVLSGMVSYTQLREAGGDANLATAFSAVGVDWAAKIISIGALAGLTTVVIVLVLGQTRVLFAMSRDGLLPRSLAQTGSRGTPVRITVIVGVVVAVAASVF 392          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: A0A4R1HJV0_9PSEU (Amino acid/polyamine/organocation transporter (APC superfamily) n=1 Tax=Pseudonocardia endophytica TaxID=401976 RepID=A0A4R1HJV0_9PSEU)

HSP 1 Score: 55.1 bits (131), Expect = 6.250e-6
Identity = 46/148 (31.08%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   28 SALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATY-ALPLVAAAVADAAPPWVSWTDGSFSKIASA---VVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTERNSRGVPHRCVAASLTAVCVLVFF 459
            + +++AF GFD VA+   E ++P  +LP  ++ SL+  T  Y A+ LV + +       ++  +G    +ASA   V AP A   +  G++AG   + +   LG    M  M+  GLLP+ L + N RG P R      T V ++  F
Sbjct:  258 AVVFFAFIGFDAVATTAEETRNPAKSLPRGIIGSLVIVTVLYVAVTLVISGMVPYTE--LATQNGESKTLASAFAIVGAPWAAAIIAVGALAGLTTVVMVLMLGQIRIMFAMSRDGLLPTGLAKTNERGTPGRATWLIGTVVALVATF 403          
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Match: UPI00083482FD (amino acid permease n=1 Tax=Nocardiopsis trehalosi TaxID=109329 RepID=UPI00083482FD)

HSP 1 Score: 53.9 bits (128), Expect = 1.560e-5
Identity = 46/146 (31.51%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   16 IPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTATYALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGFCMYVSETLGDAYTMCGMAETGLLPSALTERNSR-GVPHRCVAASLTAVCVL 450
            I   S +++AF GFD VA+   E K+P+  +P  +  SL+  T  Y    VAA V    P     TD   ++   AV A  AG  +  G V G   + +   +G +     M+  GLLP  L++ + R G P+     +  AV VL
Sbjct:  241 IAAASVVFFAFIGFDIVATTAEETKNPKRDMPIGIFGSLIIVTVLYMA--VAAVVTGMRPYTELGTDAPLAEAFRAVGADWAGTLISLGGVIGITSVILVLMMGQSRVAFAMSRDGLLPRGLSKTHPRFGTPYVMTIVTTVAVMVL 384          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119112.3928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
K3WQ01_GLOUD1.660e-1430.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6U0U068_9STRA1.700e-1434.67Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6G0X1Z4_9STRA2.810e-1438.03Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6V7QRK3_ANACO5.000e-930.95Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A199UD66_ANACO9.640e-930.95Putative polyamine transporter n=1 Tax=Ananas como... [more]
A0A368T7N2_9ACTN5.900e-833.33Amino acid permease n=1 Tax=Marinitenerispora sedi... [more]
A0A0D6QV65_ARACU1.540e-726.35Uncharacterized protein n=2 Tax=Araucariaceae TaxI... [more]
UPI001E3CF21D1.810e-631.17amino acid permease n=1 Tax=Mycobacterium sp. MYCO... [more]
A0A4R1HJV0_9PSEU6.250e-631.08Amino acid/polyamine/organocation transporter (APC... [more]
UPI00083482FD1.560e-531.51amino acid permease n=1 Tax=Nocardiopsis trehalosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119112contigM-pyrifera_M_contig119112:1..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog4792.ETI45447
Preferred namePUT1
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categorysignal peptide
GOsGO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006928,GO:0006950,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015203,GO:0015291,GO:0015297,GO:0015318,GO:0015695,GO:0015696,GO:0015711,GO:0015807,GO:0015839,GO:0015846,GO:0015849,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0019752,GO:0022607,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0040011,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0048870,GO:0050896,GO:0050900,GO:0051179,GO:0051234,GO:0051674,GO:0055085,GO:0065003,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098656,GO:1901564,GO:1902047,GO:1902475,GO:1903825,GO:1905039
EggNOG free text desc.Amino acid permease
EggNOG OGs3QB4M@4776,COG0531@1,KOG1287@2759
COG Functional cat.E
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.10012-CDS-M-pyrifera_M_contig119112:0..4591622815710.10012-CDS-M-pyrifera_M_contig119112:0..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119112 1..459 -
1692277533.133716-CDS-M-pyrifera_M_contig119112:0..4591692277533.133716-CDS-M-pyrifera_M_contig119112:0..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119112 1..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119112.3928.1prot_M-pyrifera_M_contig119112.3928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119112 1..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119112.3928.1

>prot_M-pyrifera_M_contig119112.3928.1 ID=prot_M-pyrifera_M_contig119112.3928.1|Name=mRNA_M-pyrifera_M_contig119112.3928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
VDILWIPLLSALYWAFSGFDDVASLGGEIKSPRATLPTALLLSLLATTAT
YALPLVAAAVADAAPPWVSWTDGSFSKIASAVVAPAAGVAVLAGSVAGGF
CMYVSETLGDAYTMCGMAETGLLPSALTERNSRGVPHRCVAASLTAVCVL
VFF
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mRNA from alignment at M-pyrifera_M_contig119112:1..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119112.3928.1 ID=mRNA_M-pyrifera_M_contig119112.3928.1|Name=mRNA_M-pyrifera_M_contig119112.3928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig119112:1..459- (Macrocystis pyrifera P11B4 male)
GTGGACATTTTGTGGATCCCGCTGCTGTCCGCGCTGTACTGGGCCTTTTC TGGTTTCGACGACGTTGCGTCGCTTGGCGGAGAGATCAAATCACCACGCG CCACTCTGCCCACCGCGCTGCTGCTCTCGCTGCTGGCCACCACCGCCACG TACGCGCTGCCGCTGGTCGCCGCCGCCGTCGCCGACGCCGCCCCACCTTG GGTCTCTTGGACGGACGGCTCCTTCTCCAAGATCGCTTCGGCGGTTGTTG CACCTGCCGCCGGCGTCGCCGTCCTCGCCGGATCCGTCGCCGGCGGCTTC TGCATGTACGTGAGCGAGACGCTGGGCGACGCGTACACCATGTGCGGCAT GGCGGAGACGGGGCTGTTGCCGTCGGCGCTGACGGAGCGCAACTCGCGGG GTGTGCCGCATCGGTGCGTGGCCGCCAGCCTCACGGCGGTGTGCGTGCTG GTATTCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119112:1..459-

>mRNA_M-pyrifera_M_contig119112.3928.1 ID=mRNA_M-pyrifera_M_contig119112.3928.1|Name=mRNA_M-pyrifera_M_contig119112.3928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig119112:1..459- (Macrocystis pyrifera P11B4 male)
GTGGACATTTTGTGGATCCCGCTGCTGTCCGCGCTGTACTGGGCCTTTTC
TGGTTTCGACGACGTTGCGTCGCTTGGCGGAGAGATCAAATCACCACGCG
CCACTCTGCCCACCGCGCTGCTGCTCTCGCTGCTGGCCACCACCGCCACG
TACGCGCTGCCGCTGGTCGCCGCCGCCGTCGCCGACGCCGCCCCACCTTG
GGTCTCTTGGACGGACGGCTCCTTCTCCAAGATCGCTTCGGCGGTTGTTG
CACCTGCCGCCGGCGTCGCCGTCCTCGCCGGATCCGTCGCCGGCGGCTTC
TGCATGTACGTGAGCGAGACGCTGGGCGACGCGTACACCATGTGCGGCAT
GGCGGAGACGGGGCTGTTGCCGTCGGCGCTGACGGAGCGCAACTCGCGGG
GTGTGCCGCATCGGTGCGTGGCCGCCAGCCTCACGGCGGTGTGCGTGCTG
GTATTCTTCGTGGACATTTTGTGGATCCCGCTGCTGTCCGCGCTGTACTG
GGCCTTTTCTGGTTTCGACGACGTTGCGTCGCTTGGCGGAGAGATCAAAT
CACCACGCGCCACTCTGCCCACCGCGCTGCTGCTCTCGCTGCTGGCCACC
ACCGCCACGTACGCGCTGCCGCTGGTCGCCGCCGCCGTCGCCGACGCCGC
CCCACCTTGGGTCTCTTGGACGGACGGCTCCTTCTCCAAGATCGCTTCGG
CGGTTGTTGCACCTGCCGCCGGCGTCGCCGTCCTCGCCGGATCCGTCGCC
GGCGGCTTCTGCATGTACGTGAGCGAGACGCTGGGCGACGCGTACACCAT
GTGCGGCATGGCGGAGACGGGGCTGTTGCCGTCGGCGCTGACGGAGCGCA
ACTCGCGGGGTGTGCCGCATCGGTGCGTGGCCGCCAGCCTCACGGCGGTG
TGCGTGCTGGTATTCTTC
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