mRNA_M-pyrifera_M_contig119111.3927.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119111.3927.1
Unique NamemRNA_M-pyrifera_M_contig119111.3927.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: UPI00034AA8BD (M67 family metallopeptidase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034AA8BD)

HSP 1 Score: 118 bits (296), Expect = 9.000e-33
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 IDAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVVI 207
            +DA+DRGWEIN VVHSHTHSEPYPSPTDV AAVSP WHYVIVSLKR  PEVRS+R+V G+I++E  VVI
Sbjct:   70 VDADDRGWEINSVVHSHTHSEPYPSPTDVDAAVSPAWHYVIVSLKREAPEVRSYRIVAGEIVSEPIVVI 138
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BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A7Y1ZXR7_9ACTN (M67 family metallopeptidase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZXR7_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 2.820e-29
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    4 DAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVVI 207
            DA+DRGWEIN VVHSHTHSEPYPSPTDV +A  P WHYVI+ LKR  PEVRS+R+VDG I  E+ V+I
Sbjct:   71 DADDRGWEINGVVHSHTHSEPYPSPTDVESAPDPSWHYVIIGLKREAPEVRSYRIVDGAIREEQLVII 138
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BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A4R7I0W5_9ACTN (Proteasome lid subunit RPN8/RPN11 n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I0W5_9ACTN)

HSP 1 Score: 107 bits (267), Expect = 1.940e-28
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    4 DAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAE 192
            DA+D+GWEIN VVHSHTHSEPYPSPTDVA AV P WHYVIVSLKR  PE+RS+R+VDG I  E
Sbjct:   65 DADDQGWEINGVVHSHTHSEPYPSPTDVAQAVDPGWHYVIVSLKREAPELRSYRIVDGTIEEE 127
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BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A6N2DKI2_9ACTN (M67 family peptidase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DKI2_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 2.190e-25
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    7 AEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVV 204
            A+DRG EIN VVHSHTHSEPYPSPTDVA A  P WHYVIVSLKR +PEVRS+R+V G I  E   V
Sbjct:   80 ADDRGIEINGVVHSHTHSEPYPSPTDVAQAPDPSWHYVIVSLKRDVPEVRSYRIVGGGITEEPIEV 145
[Close]
BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A6C7E9M5_ILUCY (JAB_MPN domain-containing protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E9M5_ILUCY)

HSP 1 Score: 99.4 bits (246), Expect = 3.540e-25
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    4 DAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVVI 207
            DA+D  WEINCVVHS        SPTDV+AA+SPDWHYVIVSLKR  PEVRS+R+VDG+I+AE   ++
Sbjct:   71 DADDHDWEINCVVHSXXXXXXXXSPTDVSAAISPDWHYVIVSLKREAPEVRSYRIVDGEIVAEPLAIV 138
[Close]
BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A539DZ12_9ACTN (MPN domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DZ12_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.320e-24
Identity = 46/67 (68.66%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    4 DAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVV 204
            DA+D G E+  VVHSHTHSEPYPSPTDVA A  P WHYVIVSLKR  PE RS+R+VDG+I  E   V
Sbjct:   68 DADDAGREVIGVVHSHTHSEPYPSPTDVAQAPDPSWHYVIVSLKREAPETRSYRIVDGEISEEPIAV 134
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BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: UPI0013C50CF9 (M67 family metallopeptidase n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI0013C50CF9)

HSP 1 Score: 97.4 bits (241), Expect = 2.030e-24
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    4 DAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVV 204
            DAE  GW+I  VVHSHTH+EPYPSPTD+  A  P WHYVIVSLKR  PE+RS+R+VDG +  E  VV
Sbjct:   70 DAEANGWDIVGVVHSHTHTEPYPSPTDIGQAPDPGWHYVIVSLKRESPELRSYRIVDGAVTEEAVVV 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A6J6JD41_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6JD41_9ZZZZ)

HSP 1 Score: 94.4 bits (233), Expect = 6.160e-24
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 DAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVVI 207
            DAEDRG E+  VVHSHTHSEPYPSPTDVA A  P WHYVIVS +   P VRS+R+++G+ IAEE VV+
Sbjct:    8 DAEDRGSELIGVVHSHTHSEPYPSPTDVAQAPDPAWHYVIVSFRLGQPMVRSYRIIEGE-IAEEAVVV 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A848UH92_9ACTN (M67 family metallopeptidase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A848UH92_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 7.650e-24
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 IDAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAE 192
            +DA+D   EI  VVHSHTHSEPYPSPTDVA A  P WHYVIV LKR  PE+RS+R+VDG+I  E
Sbjct:   42 LDADDHDLEILGVVHSHTHSEPYPSPTDVAQAPDPGWHYVIVGLKRDAPELRSYRIVDGEITEE 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Match: A0A6J6DV13_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J6DV13_9ZZZZ)

HSP 1 Score: 95.1 bits (235), Expect = 1.940e-23
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    7 AEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPEVRSFRMVDGDIIAEEFVV 204
            AED G E+  VVHSHTHSEPYPSPTDVA A  P+WHYVIVSLKR  PE RS+R+VDG I  E   V
Sbjct:   78 AEDAGLEVIGVVHSHTHSEPYPSPTDVAQAPDPNWHYVIVSLKRGAPESRSYRIVDGAISEEPIAV 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119111.3927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00034AA8BD9.000e-3378.26M67 family metallopeptidase n=1 Tax=Ilumatobacter ... [more]
A0A7Y1ZXR7_9ACTN2.820e-2972.06M67 family metallopeptidase n=1 Tax=Ilumatobacter ... [more]
A0A4R7I0W5_9ACTN1.940e-2877.78Proteasome lid subunit RPN8/RPN11 n=1 Tax=Ilumatob... [more]
A0A6N2DKI2_9ACTN2.190e-2572.73M67 family peptidase n=1 Tax=Ilumatobacter sp. Tax... [more]
A0A6C7E9M5_ILUCY3.540e-2564.71JAB_MPN domain-containing protein n=1 Tax=Ilumatob... [more]
A0A539DZ12_9ACTN1.320e-2468.66MPN domain-containing protein n=1 Tax=Acidimicrobi... [more]
UPI0013C50CF92.030e-2465.67M67 family metallopeptidase n=1 Tax=Desertimonas f... [more]
A0A6J6JD41_9ZZZZ6.160e-2467.65Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A848UH92_9ACTN7.650e-2468.75M67 family metallopeptidase n=1 Tax=Ilumatobacter ... [more]
A0A6J6DV13_9ZZZZ1.940e-2369.70Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119111contigM-pyrifera_M_contig119111:336..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.4
Seed ortholog evalue7.2e-19
Seed eggNOG ortholog1313172.YM304_27760
Preferred namemec
KEGG rclassRC00064,RC00090
KEGG koko:K21140
KEGG ReactionR11524
KEGG Pathwayko04122,map04122
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006508,GO:0006520,GO:0006534,GO:0006535,GO:0006563,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016787,GO:0019344,GO:0019538,GO:0019752,GO:0043167,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.JAB/MPN domain
EggNOG OGs2HG96@201174,4CN7H@84992,COG1310@1,COG1310@2
EC3.13.1.6
COG Functional cat.S
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.067543-CDS-M-pyrifera_M_contig119111:335..5451622815710.067543-CDS-M-pyrifera_M_contig119111:335..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119111 336..545 -
1692277533.1082115-CDS-M-pyrifera_M_contig119111:335..5451692277533.1082115-CDS-M-pyrifera_M_contig119111:335..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119111 336..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119111.3927.1prot_M-pyrifera_M_contig119111.3927.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119111 336..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119111.3927.1

>prot_M-pyrifera_M_contig119111.3927.1 ID=prot_M-pyrifera_M_contig119111.3927.1|Name=mRNA_M-pyrifera_M_contig119111.3927.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
IDAEDRGWEINCVVHSHTHSEPYPSPTDVAAAVSPDWHYVIVSLKRTMPE
VRSFRMVDGDIIAEEFVVI*
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mRNA from alignment at M-pyrifera_M_contig119111:336..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119111.3927.1 ID=mRNA_M-pyrifera_M_contig119111.3927.1|Name=mRNA_M-pyrifera_M_contig119111.3927.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig119111:336..545- (Macrocystis pyrifera P11B4 male)
ATCGATGCCGAGGACCGCGGCTGGGAGATCAACTGCGTGGTGCACTCCCA
CACCCACTCCGAGCCCTATCCCAGCCCGACCGACGTCGCCGCAGCGGTCT
CACCGGACTGGCACTACGTGATCGTGAGTCTCAAGCGCACCATGCCGGAA
GTCAGGTCGTTCCGGATGGTCGACGGCGACATCATCGCCGAGGAATTCGT
CGTCATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119111:336..545-

>mRNA_M-pyrifera_M_contig119111.3927.1 ID=mRNA_M-pyrifera_M_contig119111.3927.1|Name=mRNA_M-pyrifera_M_contig119111.3927.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig119111:336..545- (Macrocystis pyrifera P11B4 male)
ATCGATGCCGAGGACCGCGGCTGGGAGATCAACTGCGTGGTGCACTCCCA
CACCCACTCCGAGCCCTATCCCAGCCCGACCGACGTCGCCGCAGCGGTCT
CACCGGACTGGCACTACGTGATCGTGAGTCTCAAGCGCACCATGCCGGAA
GTCAGGTCGTTCCGGATGGTCGACGGCGACATCATCGCCGAGGAATTCGT
CGTCATCTGAATCGATGCCGAGGACCGCGGCTGGGAGATCAACTGCGTGG
TGCACTCCCACACCCACTCCGAGCCCTATCCCAGCCCGACCGACGTCGCC
GCAGCGGTCTCACCGGACTGGCACTACGTGATCGTGAGTCTCAAGCGCAC
CATGCCGGAAGTCAGGTCGTTCCGGATGGTCGACGGCGACATCATCGCCG
AGGAATTCGTCGTCATCTGA
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