mRNA_M-pyrifera_M_contig119110.3926.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119110.3926.1
Unique NamemRNA_M-pyrifera_M_contig119110.3926.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119110.3926.1 vs. uniprot
Match: A0A482SD11_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SD11_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 2.500e-17
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 CKEDMCTNVPANNQYYLTSFCDPSVACGD-PMDCDDFYCADYMRFGCGNTVTC 156
            CK  MC+++P+NN+YYLTSFCD SVACG    +C+++Y ADY RFGCG+  TC
Sbjct:   31 CKNGMCSDIPSNNEYYLTSFCDKSVACGSFSGNCNEWYSADYSRFGCGSMSTC 83
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BLAST of mRNA_M-pyrifera_M_contig119110.3926.1 vs. uniprot
Match: LYSD_DICDI (Lysozyme D n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=LYSD_DICDI)

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-13
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 CKEDMCTNVPANNQYYLTSFCDPSVACGDPMDCDDFYCADYMRFGCGNTVTCCCNGNGK 177
            C  +MC ++P+NN+YYLT+FCD S ACG P     ++ AD  RFGCG T+T C    G 
Sbjct:   26 CYGNMCCSIPSNNEYYLTTFCDESTACGTPCSAQTYFTADSQRFGCGVTLTICSTSGGS 84
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BLAST of mRNA_M-pyrifera_M_contig119110.3926.1 vs. uniprot
Match: UPI000644834A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644834A)

HSP 1 Score: 69.7 bits (169), Expect = 8.280e-13
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 CKEDMCTNVPANNQYYLTSFCDPSVACGDPMDCDDFYCADYMRFGCGNTVTCCCNGNG 174
            C  +MC ++P+NNQYYLTSFCD S ACG       ++ AD  RFGCG  +T C  G G
Sbjct:   39 CYGNMCCSIPSNNQYYLTSFCDESTACGPGCSSTTYFSADSQRFGCGVYLTICATGGG 96
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BLAST of mRNA_M-pyrifera_M_contig119110.3926.1 vs. uniprot
Match: A0A8J4V3E5_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V3E5_9MYCE)

HSP 1 Score: 68.6 bits (166), Expect = 2.530e-12
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 CKEDMCTNVPANNQYYLTSFCDPSVACGDPMDCDDFYCADYMRFGCGNTVTCCCNG 168
            C  DMC ++P+NNQYYLT+FCD S ACG        + AD  RFGCG T+T C  G
Sbjct:   27 CYGDMCCSIPSNNQYYLTTFCDESTACGTGCSQLSLFSADSQRFGCGTTLTICSAG 82
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BLAST of mRNA_M-pyrifera_M_contig119110.3926.1 vs. uniprot
Match: A0A151Z7X7_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z7X7_9MYCE)

HSP 1 Score: 66.6 bits (161), Expect = 1.410e-11
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 CKEDMCTNVPANNQYYLTSFCDPSVACGDPMDCDDFYCADYMRFGCGNTVTCC 159
            C  +MC N+P+NNQYYLT+FCD S ACG       ++ AD  RFGCG  +T C
Sbjct:   29 CYGNMCCNIPSNNQYYLTTFCDESTACGPSCSSTTWFSADSQRFGCGVYLTIC 81
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BLAST of mRNA_M-pyrifera_M_contig119110.3926.1 vs. uniprot
Match: D3B408_POLPP (Lysozyme n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B408_POLPP)

HSP 1 Score: 64.3 bits (155), Expect = 7.210e-11
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   13 MCTNVPANNQYYLTSFCDPSVACGDPMDCDDFYCADYMRFGCGNTVTCCCNG 168
            MC ++P+NNQYYLTSFCD + ACG       ++ AD  RFGCG  +T C  G
Sbjct:    1 MCCSIPSNNQYYLTSFCDETTACGPSCSSVTYFSADSQRFGCGVYLTICAGG 52
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119110.3926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A482SD11_9ARCH2.500e-1760.38Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
LYSD_DICDI1.100e-1349.15Lysozyme D n=1 Tax=Dictyostelium discoideum TaxID=... [more]
UPI000644834A8.280e-1351.72hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4V3E5_9MYCE2.530e-1253.57Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A151Z7X7_9MYCE1.410e-1152.83Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
D3B408_POLPP7.210e-1151.92Lysozyme n=1 Tax=Polysphondylium pallidum (strain ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119110contigM-pyrifera_M_contig119110:255..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue8.3e-10
Seed eggNOG ortholog44689.DDB0231280
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000270,GO:0003674,GO:0003796,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006022,GO:0006026,GO:0006027,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009253,GO:0009605,GO:0009607,GO:0009617,GO:0016787,GO:0016798,GO:0030203,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044444,GO:0044464,GO:0050830,GO:0050896,GO:0051704,GO:0051707,GO:0061783,GO:0071704,GO:0097708,GO:0098542,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.peptidoglycan catabolic process
EggNOG OGs2CJC4@1,2RD7J@2759,3XBX0@554915
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size180
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119110.3926.1prot_M-pyrifera_M_contig119110.3926.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119110 267..499 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.0132155-UTR-M-pyrifera_M_contig119110:254..2661622815710.0132155-UTR-M-pyrifera_M_contig119110:254..266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119110 255..266 +
1692277533.07966-UTR-M-pyrifera_M_contig119110:254..2661692277533.07966-UTR-M-pyrifera_M_contig119110:254..266Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119110 255..266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.0260322-CDS-M-pyrifera_M_contig119110:266..3581622815710.0260322-CDS-M-pyrifera_M_contig119110:266..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119110 267..358 +
1692277533.090255-CDS-M-pyrifera_M_contig119110:266..3581692277533.090255-CDS-M-pyrifera_M_contig119110:266..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119110 267..358 +
1622815710.0360827-CDS-M-pyrifera_M_contig119110:423..4991622815710.0360827-CDS-M-pyrifera_M_contig119110:423..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119110 424..499 +
1692277533.0984824-CDS-M-pyrifera_M_contig119110:423..4991692277533.0984824-CDS-M-pyrifera_M_contig119110:423..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119110 424..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119110.3926.1

>prot_M-pyrifera_M_contig119110.3926.1 ID=prot_M-pyrifera_M_contig119110.3926.1|Name=mRNA_M-pyrifera_M_contig119110.3926.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MCTNVPANNQYYLTSFCDPSVACGDPMDCDDFYCADYMRFGCGNTVTCCC
NGNGKC
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mRNA from alignment at M-pyrifera_M_contig119110:255..499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119110.3926.1 ID=mRNA_M-pyrifera_M_contig119110.3926.1|Name=mRNA_M-pyrifera_M_contig119110.3926.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=245bp|location=Sequence derived from alignment at M-pyrifera_M_contig119110:255..499+ (Macrocystis pyrifera P11B4 male)
TGCAAGGAGGACATGTGCACCAACGTTCCTGCTAACAACCAATACTATCT
CACATCATTCTGCGATCCTTCTGTAGCTTGCGGAGACCCAATGGACTGCG
ATGAGTACGTAAGCGCACAGGGACACGATAGCTGCTTCTCAATTACCCCG
TAGCAACTAACGATAACAGCTTCTATTGTGCCGACTACATGCGCTTCGGA
TGTGGAAACACTGTCACATGCTGCTGCAACGGTAATGGCAAGTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119110:255..499+

>mRNA_M-pyrifera_M_contig119110.3926.1 ID=mRNA_M-pyrifera_M_contig119110.3926.1|Name=mRNA_M-pyrifera_M_contig119110.3926.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig119110:255..499+ (Macrocystis pyrifera P11B4 male)
ATGTGCACCAACGTTCCTGCTAACAACCAATACTATCTCACATCATTCTG
CGATCCTTCTGTAGCTTGCGGAGACCCAATGGACTGCGATGAATGTGCAC
CAACGTTCCTGCTAACAACCAATACTATCTCACATCATTCTGCGATCCTT
CTGTAGCTTGCGGAGACCCAATGGACTGCGATGACTTCTATTGTGCCGAC
TACATGCGCTTCGGATGTGGAAACACTGTCACATGCTGCTGCAACGGTAA
TGGCAAGTGCCTTCTATTGTGCCGACTACATGCGCTTCGGATGTGGAAAC
ACTGTCACATGCTGCTGCAACGGTAATGGCAAGTGC
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