mRNA_M-pyrifera_M_contig119097.3922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119097.3922.1
Unique NamemRNA_M-pyrifera_M_contig119097.3922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A0L0HGW9_SPIPD (MFS domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HGW9_SPIPD)

HSP 1 Score: 78.2 bits (191), Expect = 1.770e-14
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    1 SSSASAVPPECSMCDLLALGMFWFGSAFWIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGAL 288
            S+  SA  P  S   +L L  FWFG   + ++ F  +VPSQ  A+AG++H+G A+    LF   + +      G  +D F+SRYGKR P+I  GAL
Sbjct:   65 SAEVSAAKPHLSTFKILCLNAFWFGYQLYWFLVFVAIVPSQIKAIAGDKHKGSALSIVSLFSGLLNLFLAVFFGALNDRFRSRYGKRHPWIIVGAL 160          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A522U158_9BACT (MFS transporter n=1 Tax=bacterium TaxID=1869227 RepID=A0A522U158_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 2.520e-12
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   43 DLLALGMFWFGSAFWIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLSAVCGPGMALAPSF 333
            DL  L ++W    +       +++P     LAG EHEG+A+G     G+ +A+I  P+VG  SD  +SR+G+RRPFIA G     V   G+AL+ S+
Sbjct:   19 DLALLSVYWIAIGYLWTSLGGLIIPDLVLQLAGREHEGVALGFLEGIGSLMAVIWQPVVGAVSDRTRSRFGRRRPFIAVGTAGDVVFLIGLALSGSY 115          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: E4U4X0_OCEP5 (Major facilitator superfamily MFS_1 n=3 Tax=Oceanithermus TaxID=208447 RepID=E4U4X0_OCEP5)

HSP 1 Score: 70.5 bits (171), Expect = 8.370e-12
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   49 LALGMFWFGSAFWIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLSAVCGPGMALAPSF 333
            L+L  +WF ++F  ++   +++P++   L     +   +G     GA +A +G P+ G  SD F SR+G+R P++ AGALL+AV    MA APS+
Sbjct:   10 LSLSAYWFATSFKWFLVLLVLLPARVAELVDPAEKATRLGWLFAVGAVMAFVGPPVFGFLSDRFPSRWGRRMPYLGAGALLTAVGLVWMAYAPSY 104          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A7C3C2S2_9DEIN (MFS transporter n=1 Tax=Oceanithermus sp. TaxID=2268145 RepID=A0A7C3C2S2_9DEIN)

HSP 1 Score: 68.6 bits (166), Expect = 4.010e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   55 LGMFWFGSAF-WIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLSAVCGPGMALAPSFPLFALSF 354
            L ++WF +AF W  + F +++P++   L     +   +G     GA +A +G PL G  SD F SR G+R P++AAGA+L+A+    MA APS+ L  L +
Sbjct:   12 LSVYWFATAFKWTLVLF-VLLPARVAELVPAAEKATRLGLLFGVGAVMATVGPPLFGYLSDRFPSRRGRRLPYLAAGAVLTALALLVMAYAPSYGLLFLGY 111          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A4R5K943_9MICC (MFS transporter n=1 Tax=Arthrobacter terricola TaxID=2547396 RepID=A0A4R5K943_9MICC)

HSP 1 Score: 68.6 bits (166), Expect = 4.110e-11
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   70 FGSAFWIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLSAVCGPGMALAPS 330
            FG AF I +     +  +A AL G++    A+GA    GAFVA + NP+ G  SD  + R+G+RRP++ AGAL   V   G+ALAPS
Sbjct:   39 FGWAFAIQVPLVASLALKAQALVGQDQAVAALGAVTSIGAFVAFLANPVFGRLSDRTRGRFGRRRPWLVAGALGLVVSLLGIALAPS 125          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A1Q7QAE1_9ACTN (MFS domain-containing protein n=4 Tax=Terrabacteria group TaxID=1783272 RepID=A0A1Q7QAE1_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 5.580e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   52 ALGMFWFGSAFWIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLS 294
            AL  FWFGS F       +++ +Q D++  +  +  A+G  L  G  +A+   PLVG WSD   +RYG+RRP + AG LL+
Sbjct:   21 ALSAFWFGSNFLWLPLTTVLIQAQVDSVVPKGLQNTAIGVALGIGGVLAMTVPPLVGAWSDRLNTRYGRRRPIMVAGTLLT 101          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A536RRY5_9CHLR (SLC45 family MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536RRY5_9CHLR)

HSP 1 Score: 68.2 bits (165), Expect = 5.580e-11
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   25 PECSMCDLLALGM--FWFGSAF-WIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLSAVCGPGMAL 321
            PE    +L   G+  FWFGS F WI +   +++ SQ D++  +  +  A+G  L  G  +A+   P+VG WSD   +R+G+RRP I AG+LL+    PG+ +
Sbjct:   11 PEVGFGNLRHAGLSAFWFGSNFLWIPLT-TVLIQSQIDSVVPKGSQNTAIGVALGIGGVLAMTVPPIVGAWSDRLNTRFGRRRPIIVAGSLLTM---PGLVI 108          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A536GZA5_9CHLR (SLC45 family MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536GZA5_9CHLR)

HSP 1 Score: 65.9 bits (159), Expect = 8.880e-11
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   52 ALGMFWFGSAF-WIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLS 294
            AL  FWFGS F WI +   +++ +Q D +  +  +  A+G  L  G  +A+   P+VG WSD   +R+G+RRP + AG LL+
Sbjct:   21 ALSAFWFGSNFLWIPLT-TVLIQAQVDQVVPKGSQNTAIGVALGLGGLLAMTVPPIVGAWSDRLNTRWGRRRPIMVAGTLLT 101          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A3B8XC16_9CHLR (MFS domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3B8XC16_9CHLR)

HSP 1 Score: 67.4 bits (163), Expect = 1.040e-10
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 1
Query:    7 SASAVPPECSMCDLLALGMFWFGSAFWIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLS 294
            +A   P         AL  FWFGS F       I++ +Q D +  +  +  A+G  L  G  +A+   PLVG WSD   +R+G+RRP + AG LL+
Sbjct:    6 AARPAPAHYGNLQHTALSAFWFGSNFLWLPLTTILIQAQIDEVVPKGSQNTAIGFALGLGGLLAVTVPPLVGAWSDRLNTRFGRRRPIMVAGTLLT 101          
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Match: A0A536PVN9_9CHLR (SLC45 family MFS transporter n=5 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536PVN9_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 1.960e-10
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   55 LGMFWFGSAF-WIYIFFAIVVPSQADALAGEEHEGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLSAVCGPGMAL 321
            L  FWFGS F WI +   +++ +Q D++  +  +  A+G  L  G  +A+   PLVG WSD   SR+G+RRP + AG++L+    PG+ +
Sbjct:   36 LSAFWFGSNFLWIPLT-TVLIQNQIDSVVPKGSQNTAIGVALGIGGLLAMTVPPLVGAWSDRLHSRFGRRRPIMVAGSILTL---PGLVI 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119097.3922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0HGW9_SPIPD1.770e-1439.58MFS domain-containing protein n=2 Tax=Spizellomyce... [more]
A0A522U158_9BACT2.520e-1238.14MFS transporter n=1 Tax=bacterium TaxID=1869227 Re... [more]
E4U4X0_OCEP58.370e-1235.79Major facilitator superfamily MFS_1 n=3 Tax=Oceani... [more]
A0A7C3C2S2_9DEIN4.010e-1137.62MFS transporter n=1 Tax=Oceanithermus sp. TaxID=22... [more]
A0A4R5K943_9MICC4.110e-1143.68MFS transporter n=1 Tax=Arthrobacter terricola Tax... [more]
A0A1Q7QAE1_9ACTN5.580e-1139.51MFS domain-containing protein n=4 Tax=Terrabacteri... [more]
A0A536RRY5_9CHLR5.580e-1137.25SLC45 family MFS transporter n=1 Tax=Chloroflexi b... [more]
A0A536GZA5_9CHLR8.880e-1139.02SLC45 family MFS transporter (Fragment) n=1 Tax=Ch... [more]
A0A3B8XC16_9CHLR1.040e-1035.42MFS domain-containing protein n=1 Tax=Chloroflexi ... [more]
A0A536PVN9_9CHLR1.960e-1037.78SLC45 family MFS transporter n=5 Tax=Chloroflexi b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119097contigM-pyrifera_M_contig119097:91..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score79.0
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog109760.SPPG_09148T0
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs2S2XZ@2759,3A47P@33154,COG0477@1
COG Functional cat.EGP
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.7916007-CDS-M-pyrifera_M_contig119097:90..3381622815709.7916007-CDS-M-pyrifera_M_contig119097:90..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119097 91..338 +
1692277532.9630864-CDS-M-pyrifera_M_contig119097:90..3381692277532.9630864-CDS-M-pyrifera_M_contig119097:90..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119097 91..338 +
1622815709.8046448-CDS-M-pyrifera_M_contig119097:430..5361622815709.8046448-CDS-M-pyrifera_M_contig119097:430..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119097 431..536 +
1692277532.9729455-CDS-M-pyrifera_M_contig119097:430..5361692277532.9729455-CDS-M-pyrifera_M_contig119097:430..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119097 431..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119097.3922.1prot_M-pyrifera_M_contig119097.3922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119097 91..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119097.3922.1

>prot_M-pyrifera_M_contig119097.3922.1 ID=prot_M-pyrifera_M_contig119097.3922.1|Name=mRNA_M-pyrifera_M_contig119097.3922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
SSSASAVPPECSMCDLLALGMFWFGSAFWIYIFFAIVVPSQADALAGEEH
EGIAVGACLLFGAFVAIIGNPLVGLWSDNFKSRYGKRRPFIAAGALLSAV
CGPGMALAPSFPLFALSF
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mRNA from alignment at M-pyrifera_M_contig119097:91..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119097.3922.1 ID=mRNA_M-pyrifera_M_contig119097.3922.1|Name=mRNA_M-pyrifera_M_contig119097.3922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=446bp|location=Sequence derived from alignment at M-pyrifera_M_contig119097:91..536+ (Macrocystis pyrifera P11B4 male)
AGTTCGTCAGCGAGCGCAGTGCCTCCTGAGTGTTCTATGTGCGACCTGCT CGCCCTCGGCATGTTCTGGTTCGGCTCTGCGTTCTGGATTTACATCTTCT TTGCCATTGTGGTGCCGTCCCAGGCGGACGCCCTTGCCGGAGAGGAACAC GAGGGCATCGCAGTAGGTGCTTGTCTGCTGTTTGGCGCGTTTGTGGCCAT CATCGGCAACCCGCTGGTCGGGTTGTGGAGCGACAACTTCAAGAGCAGGT GCGAGGCCCGCCCCCTGTCCCCTCCGCCTGTTCGCACGCTCCTAGCCTGC CCGCACATCATCTCATGCGCAATGTTGCTCCTTCGTTTAGATACGGCAAG CGCCGCCCGTTCATTGCAGCCGGGGCGTTGTTGTCTGCAGTGTGTGGCCC TGGGATGGCGTTGGCGCCCAGCTTCCCGCTCTTCGCGCTGTCCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119097:91..536+

>mRNA_M-pyrifera_M_contig119097.3922.1 ID=mRNA_M-pyrifera_M_contig119097.3922.1|Name=mRNA_M-pyrifera_M_contig119097.3922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig119097:91..536+ (Macrocystis pyrifera P11B4 male)
AGTTCGTCAGCGAGCGCAGTGCCTCCTGAGTGTTCTATGTGCGACCTGCT
CGCCCTCGGCATGTTCTGGTTCGGCTCTGCGTTCTGGATTTACATCTTCT
TTGCCATTGTGGTGCCGTCCCAGGCGGACGCCCTTGCCGGAGAGGAACAC
GAGGGCATCGCAGTAGGTGCTTGTCTGCTGTTTGGCGCGTTTGTGGCCAT
CATCGGCAACCCGCTGGTCGGGTTGTGGAGCGACAACTTCAAGAGCAGAG
TTCGTCAGCGAGCGCAGTGCCTCCTGAGTGTTCTATGTGCGACCTGCTCG
CCCTCGGCATGTTCTGGTTCGGCTCTGCGTTCTGGATTTACATCTTCTTT
GCCATTGTGGTGCCGTCCCAGGCGGACGCCCTTGCCGGAGAGGAACACGA
GGGCATCGCAGTAGGTGCTTGTCTGCTGTTTGGCGCGTTTGTGGCCATCA
TCGGCAACCCGCTGGTCGGGTTGTGGAGCGACAACTTCAAGAGCAGATAC
GGCAAGCGCCGCCCGTTCATTGCAGCCGGGGCGTTGTTGTCTGCAGTGTG
TGGCCCTGGGATGGCGTTGGCGCCCAGCTTCCCGCTCTTCGCGCTGTCCT
TCATACGGCAAGCGCCGCCCGTTCATTGCAGCCGGGGCGTTGTTGTCTGC
AGTGTGTGGCCCTGGGATGGCGTTGGCGCCCAGCTTCCCGCTCTTCGCGC
TGTCCTTC
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