mRNA_M-pyrifera_M_contig119086.3916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119086.3916.1
Unique NamemRNA_M-pyrifera_M_contig119086.3916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119086.3916.1 vs. uniprot
Match: UPI001BFD54F2 (sel1 repeat family protein n=1 Tax=Polynucleobacter sp. MG-Unter2-18 TaxID=2081052 RepID=UPI001BFD54F2)

HSP 1 Score: 58.9 bits (141), Expect = 4.900e-7
Identity = 36/104 (34.62%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:    1 HADAPYALARIYRQGQGVPKDEEKAFDLLIQAGGRGNVAAQLELGIMFSE--NRSMRDADEASKWLRMAADKGDSQAQYKLAVLYFESADLIRDYAAGLRLFEQ 306
            HA A Y L   Y +G GVPKDE+KA +LL +A   G  +AQ  +GI  S   +   +D  EA  W   AA  G +  Q +LA  Y     +  +Y      +++
Sbjct:  100 HATATYELFGCYLEGAGVPKDEQKAIELLKKAAEMGEPSAQAVMGIFISGGVHGFTQDQTEALHWFMKAAQGGSAHGQLRLADAYIAGELIQPNYEKAFEYYKK 203
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BLAST of mRNA_M-pyrifera_M_contig119086.3916.1 vs. uniprot
Match: A0A4Q3GTQ4_9HYPH (Sel1 repeat family protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4Q3GTQ4_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 3.210e-5
Identity = 39/100 (39.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:    4 ADAPYALARIYRQG---QGVPKDEEKAFDLLIQAGGR-GNVAAQLELGIMFSENRSMRDADEASKWLRMAADKGDSQAQYKLAVLYFESADLIRDYAAGL 291
            A+A  AL R YR+G     V  D E+A ++   A    GN  AQ  L  M+ +  + RDA  A++WL +AA KG  QAQ  L  + F    L R  A GL
Sbjct:   89 ANAFLALGRYYREGIPNSRVKPDRERAREMFAYAASYFGNPDAQYNLARMYLDG-TQRDAKYAARWLGLAAQKGQLQAQVLLGQMLFNGDQLQRQAARGL 187
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BLAST of mRNA_M-pyrifera_M_contig119086.3916.1 vs. uniprot
Match: B4CW69_9BACT (Sel1 domain protein repeat-containing protein n=1 Tax=Chthoniobacter flavus Ellin428 TaxID=497964 RepID=B4CW69_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 5.900e-5
Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:    1 HADAPYALARIYRQGQGVPKDEEKAFDLLIQAGGRGNVAAQLELGIMF----SENRSMRDADEASKWLRMAADKGDSQAQYKLAVLYFESADLIRDYAA 285
            H  A  ALAR+YR G GVPKD+EKA +L+ +     N +   ++G  +    ++  + +  DEA  +L  AA  G   AQ  L   Y  ++   +D+ A
Sbjct:  490 HPLATTALARMYRMGDGVPKDDEKAEELIARIAETTNPSVLCQIGFTYLPTGNQPPNEKYVDEALGYLERAAQHGYGPAQGPLGFCYMTASPAHQDFVA 588
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BLAST of mRNA_M-pyrifera_M_contig119086.3916.1 vs. uniprot
Match: A0A3D4X5W6_9FIRM (Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3D4X5W6_9FIRM)

HSP 1 Score: 52.8 bits (125), Expect = 8.180e-5
Identity = 35/120 (29.17%), Postives = 54/120 (45.00%), Query Frame = 1 
Query:    7 DAPYALARIYRQGQGVPKDEEKAFDLLIQAGGRGNVAAQLELG-------------IMFSENRSMRDA----------------DEASKWLRMAADKGDSQAQYKLAVLYFESADLIRDY 279
            +  Y L R+Y +G G  +DE+KA     +A G+G+ AAQ ++G             I + E     D                 +EA KWL+  AD+G++QA+Y   V+Y    D +  Y
Sbjct:  591 EGQYFLGRMYDKGWGTSRDEKKALYWFEKAAGQGHTAAQKKVGDMKLARGDGLGALIAYEELAEKGDEYAMFMYGVACAEDGRYEEALKWLKPFADRGNTQAEYNCGVIYERMGDRVEAY 710
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119086.3916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001BFD54F24.900e-734.62sel1 repeat family protein n=1 Tax=Polynucleobacte... [more]
A0A4Q3GTQ4_9HYPH3.210e-539.00Sel1 repeat family protein (Fragment) n=1 Tax=Hyph... [more]
B4CW69_9BACT5.900e-533.33Sel1 domain protein repeat-containing protein n=1 ... [more]
A0A3D4X5W6_9FIRM8.180e-529.17Uncharacterized protein n=1 Tax=Lachnospiraceae ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119086contigM-pyrifera_M_contig119086:2..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue5.1e-08
Seed eggNOG ortholog1545915.JROG01000001_gene221
KEGG koko:K07126
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Sel1 domain protein repeat-containing protein
EggNOG OGs1MWPA@1224,2K2V2@204457,2TR2B@28211,COG0790@1,COG0790@2
COG Functional cat.S
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.555031-CDS-M-pyrifera_M_contig119086:1..5441622815709.555031-CDS-M-pyrifera_M_contig119086:1..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119086 2..544 +
1692277532.8791237-CDS-M-pyrifera_M_contig119086:1..5441692277532.8791237-CDS-M-pyrifera_M_contig119086:1..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119086 2..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119086.3916.1prot_M-pyrifera_M_contig119086.3916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119086 2..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119086.3916.1

>prot_M-pyrifera_M_contig119086.3916.1 ID=prot_M-pyrifera_M_contig119086.3916.1|Name=mRNA_M-pyrifera_M_contig119086.3916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
HADAPYALARIYRQGQGVPKDEEKAFDLLIQAGGRGNVAAQLELGIMFSE
NRSMRDADEASKWLRMAADKGDSQAQYKLAVLYFESADLIRDYAAGLRLF
EQASEQGHALAQTYLADIYFSGSVVDQDLETAASWYLSAAQQGNAKAQYM
LGHMYDEGIGFAEDDRIAVEWLRVAAAAGNA
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mRNA from alignment at M-pyrifera_M_contig119086:2..544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119086.3916.1 ID=mRNA_M-pyrifera_M_contig119086.3916.1|Name=mRNA_M-pyrifera_M_contig119086.3916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig119086:2..544+ (Macrocystis pyrifera P11B4 male)
CATGCGGATGCTCCTTATGCGCTCGCGCGAATCTATCGGCAAGGACAAGG
CGTCCCGAAAGATGAGGAAAAAGCGTTCGACCTGCTGATCCAAGCGGGCG
GGCGCGGGAATGTCGCAGCGCAACTGGAATTAGGCATAATGTTCTCTGAA
AACAGGTCTATGCGCGACGCCGATGAAGCGAGCAAGTGGCTTCGCATGGC
AGCGGACAAAGGCGATAGCCAGGCGCAATATAAATTGGCAGTGCTGTATT
TCGAGAGCGCCGACCTCATTCGCGACTACGCTGCCGGTCTCCGATTATTT
GAACAGGCTTCCGAACAAGGTCACGCTCTTGCCCAGACTTACCTGGCAGA
TATCTATTTCTCCGGATCAGTAGTCGACCAGGACTTGGAGACTGCCGCGA
GTTGGTACCTGAGTGCAGCACAACAGGGAAATGCCAAAGCACAATACATG
CTTGGGCATATGTATGACGAAGGTATCGGGTTCGCCGAAGATGACCGAAT
TGCCGTAGAGTGGCTGCGCGTAGCAGCGGCAGCCGGCAATGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119086:2..544+

>mRNA_M-pyrifera_M_contig119086.3916.1 ID=mRNA_M-pyrifera_M_contig119086.3916.1|Name=mRNA_M-pyrifera_M_contig119086.3916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig119086:2..544+ (Macrocystis pyrifera P11B4 male)
CATGCGGATGCTCCTTATGCGCTCGCGCGAATCTATCGGCAAGGACAAGG
CGTCCCGAAAGATGAGGAAAAAGCGTTCGACCTGCTGATCCAAGCGGGCG
GGCGCGGGAATGTCGCAGCGCAACTGGAATTAGGCATAATGTTCTCTGAA
AACAGGTCTATGCGCGACGCCGATGAAGCGAGCAAGTGGCTTCGCATGGC
AGCGGACAAAGGCGATAGCCAGGCGCAATATAAATTGGCAGTGCTGTATT
TCGAGAGCGCCGACCTCATTCGCGACTACGCTGCCGGTCTCCGATTATTT
GAACAGGCTTCCGAACAAGGTCACGCTCTTGCCCAGACTTACCTGGCAGA
TATCTATTTCTCCGGATCAGTAGTCGACCAGGACTTGGAGACTGCCGCGA
GTTGGTACCTGAGTGCAGCACAACAGGGAAATGCCAAAGCACAATACATG
CTTGGGCATATGTATGACGAAGGTATCGGGTTCGCCGAAGATGACCGAAT
TGCCGTAGAGTGGCTGCGCGTAGCAGCGGCAGCCGGCAATGCCCATGCGG
ATGCTCCTTATGCGCTCGCGCGAATCTATCGGCAAGGACAAGGCGTCCCG
AAAGATGAGGAAAAAGCGTTCGACCTGCTGATCCAAGCGGGCGGGCGCGG
GAATGTCGCAGCGCAACTGGAATTAGGCATAATGTTCTCTGAAAACAGGT
CTATGCGCGACGCCGATGAAGCGAGCAAGTGGCTTCGCATGGCAGCGGAC
AAAGGCGATAGCCAGGCGCAATATAAATTGGCAGTGCTGTATTTCGAGAG
CGCCGACCTCATTCGCGACTACGCTGCCGGTCTCCGATTATTTGAACAGG
CTTCCGAACAAGGTCACGCTCTTGCCCAGACTTACCTGGCAGATATCTAT
TTCTCCGGATCAGTAGTCGACCAGGACTTGGAGACTGCCGCGAGTTGGTA
CCTGAGTGCAGCACAACAGGGAAATGCCAAAGCACAATACATGCTTGGGC
ATATGTATGACGAAGGTATCGGGTTCGCCGAAGATGACCGAATTGCCGTA
GAGTGGCTGCGCGTAGCAGCGGCAGCCGGCAATGCC
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