mRNA_M-pyrifera_M_contig119.3903.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119.3903.1
Unique NamemRNA_M-pyrifera_M_contig119.3903.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119.3903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119contigM-pyrifera_M_contig119:1513..2052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size541
Cds size540
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.744477-CDS-M-pyrifera_M_contig119:1512..20521622815708.744477-CDS-M-pyrifera_M_contig119:1512..2052Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119 1513..2052 +
1692277532.3443506-CDS-M-pyrifera_M_contig119:1512..20521692277532.3443506-CDS-M-pyrifera_M_contig119:1512..2052Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119 1513..2052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119.3903.1prot_M-pyrifera_M_contig119.3903.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119 1513..2052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119.3903.1

>prot_M-pyrifera_M_contig119.3903.1 ID=prot_M-pyrifera_M_contig119.3903.1|Name=mRNA_M-pyrifera_M_contig119.3903.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
ELTFSYFPVGVQHSCITSQFARSRLERTLVRIVNFATATITFNIFLTLVQ
QRPWGYCRENTPQHNVTTNQIEHMKSPHMHIPWIAKKAAVETQRQHAPPR
RTTRPTADKQLSWQEETSILLIQQSRPPYVLPFTKSIKKHTKKWTRSRRQ
ELSCFYPAGTPKLASGETTKARGMTTQHA*
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mRNA from alignment at M-pyrifera_M_contig119:1513..2052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119.3903.1 ID=mRNA_M-pyrifera_M_contig119.3903.1|Name=mRNA_M-pyrifera_M_contig119.3903.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig119:1513..2052+ (Macrocystis pyrifera P11B4 male)
GAGCTTACGTTTTCATATTTTCCCGTTGGTGTACAACACTCATGTATTAC
GAGCCAATTCGCAAGGAGTCGACTCGAACGGACGCTGGTGCGTATAGTTA
ATTTCGCAACAGCTACGATAACATTTAACATTTTCCTTACGCTCGTACAG
CAGCGGCCTTGGGGCTACTGTCGTGAGAACACCCCGCAACATAACGTCAC
CACCAATCAAATCGAACACATGAAGTCACCACACATGCACATACCATGGA
TCGCAAAAAAAGCCGCAGTGGAAACCCAACGGCAGCACGCGCCGCCTCGA
CGTACAACACGACCAACAGCAGACAAGCAACTGTCGTGGCAAGAAGAGAC
TTCCATTTTATTAATACAGCAGTCTCGGCCTCCATACGTACTTCCCTTCA
CCAAGTCCATTAAAAAACACACAAAAAAATGGACGAGATCGCGAAGACAA
GAGCTATCTTGTTTTTACCCAGCGGGAACACCAAAACTGGCCAGCGGCGA
AACCACGAAGGCTAGGGGAATGACAACACAACACGCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119:1513..2052+

>mRNA_M-pyrifera_M_contig119.3903.1 ID=mRNA_M-pyrifera_M_contig119.3903.1|Name=mRNA_M-pyrifera_M_contig119.3903.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig119:1513..2052+ (Macrocystis pyrifera P11B4 male)
GAGCTTACGTTTTCATATTTTCCCGTTGGTGTACAACACTCATGTATTAC
GAGCCAATTCGCAAGGAGTCGACTCGAACGGACGCTGGTGCGTATAGTTA
ATTTCGCAACAGCTACGATAACATTTAACATTTTCCTTACGCTCGTACAG
CAGCGGCCTTGGGGCTACTGTCGTGAGAACACCCCGCAACATAACGTCAC
CACCAATCAAATCGAACACATGAAGTCACCACACATGCACATACCATGGA
TCGCAAAAAAAGCCGCAGTGGAAACCCAACGGCAGCACGCGCCGCCTCGA
CGTACAACACGACCAACAGCAGACAAGCAACTGTCGTGGCAAGAAGAGAC
TTCCATTTTATTAATACAGCAGTCTCGGCCTCCATACGTACTTCCCTTCA
CCAAGTCCATTAAAAAACACACAAAAAAATGGACGAGATCGCGAAGACAA
GAGCTATCTTGTTTTTACCCAGCGGGAACACCAAAACTGGCCAGCGGCGA
AACCACGAAGGCTAGGGGAATGACAACACAACACGCTTGAGAGCTTACGT
TTTCATATTTTCCCGTTGGTGTACAACACTCATGTATTACGAGCCAATTC
GCAAGGAGTCGACTCGAACGGACGCTGGTGCGTATAGTTAATTTCGCAAC
AGCTACGATAACATTTAACATTTTCCTTACGCTCGTACAGCAGCGGCCTT
GGGGCTACTGTCGTGAGAACACCCCGCAACATAACGTCACCACCAATCAA
ATCGAACACATGAAGTCACCACACATGCACATACCATGGATCGCAAAAAA
AGCCGCAGTGGAAACCCAACGGCAGCACGCGCCGCCTCGACGTACAACAC
GACCAACAGCAGACAAGCAACTGTCGTGGCAAGAAGAGACTTCCATTTTA
TTAATACAGCAGTCTCGGCCTCCATACGTACTTCCCTTCACCAAGTCCAT
TAAAAAACACACAAAAAAATGGACGAGATCGCGAAGACAAGAGCTATCTT
GTTTTTACCCAGCGGGAACACCAAAACTGGCCAGCGGCGAAACCACGAAG
GCTAGGGGAATGACAACACAACACGCTTGA
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