mRNA_M-pyrifera_M_contig118982.3901.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118982.3901.1
Unique NamemRNA_M-pyrifera_M_contig118982.3901.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig118982.3901.1 vs. uniprot
Match: A0A7K1ZEG9_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZEG9_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 2.750e-8
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  274 PVPVGSPGDVTLSETGLRLTGGELVLFDQSESTVFAALVDVLGEPDADTGLEEAPFCSGERSRFVTWGDLEVVFTED 504
            PV VG+PG VTL ETGL+   G +V F Q  + V   +  VLG PD+ T       C  + +R V WG LE+VF +D
Sbjct:  345 PVAVGTPGPVTLVETGLQFDTGSVVRFGQPMAAVLDEVRSVLGAPDSATNFRTTDACV-DGARSVRWGQLELVFLQD 420
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118982.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7K1ZEG9_9ACTN2.750e-844.16Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118982contigM-pyrifera_M_contig118982:8..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.6741195-CDS-M-pyrifera_M_contig118982:7..5471622815708.6741195-CDS-M-pyrifera_M_contig118982:7..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118982 8..547 +
1692277532.3197455-CDS-M-pyrifera_M_contig118982:7..5471692277532.3197455-CDS-M-pyrifera_M_contig118982:7..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118982 8..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118982.3901.1prot_M-pyrifera_M_contig118982.3901.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118982 8..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118982.3901.1

>prot_M-pyrifera_M_contig118982.3901.1 ID=prot_M-pyrifera_M_contig118982.3901.1|Name=mRNA_M-pyrifera_M_contig118982.3901.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
LIALVVVVGLIGAVVLALVAFGGDDGGDTATDTDPTTTLATTTTLDATTT
APPDTTTTADPDQTATTVDPTETTTTTTSTTTTEAPSTTTTPVPVGSPGD
VTLSETGLRLTGGELVLFDQSESTVFAALVDVLGEPDADTGLEEAPFCSG
ERSRFVTWGDLEVVFTEDELDSGESRFTQW
back to top

mRNA from alignment at M-pyrifera_M_contig118982:8..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118982.3901.1 ID=mRNA_M-pyrifera_M_contig118982.3901.1|Name=mRNA_M-pyrifera_M_contig118982.3901.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig118982:8..547+ (Macrocystis pyrifera P11B4 male)
CTCATCGCGCTCGTCGTGGTGGTGGGCCTGATCGGGGCGGTCGTCCTGGC
CCTCGTCGCCTTCGGCGGTGACGACGGCGGCGACACGGCCACCGACACCG
ACCCGACCACCACCCTCGCCACGACCACCACGCTCGACGCGACCACCACG
GCGCCGCCCGACACGACCACCACGGCCGATCCCGACCAGACCGCGACCAC
CGTCGACCCGACCGAGACCACCACCACCACGACGTCGACGACCACCACCG
AGGCGCCGTCCACGACCACCACCCCGGTGCCCGTCGGGTCACCGGGCGAC
GTGACCCTCAGCGAGACCGGCTTGCGCCTTACCGGGGGAGAGCTCGTGCT
GTTCGATCAGAGCGAGTCCACCGTGTTCGCGGCACTCGTCGACGTGCTGG
GCGAGCCCGACGCCGACACCGGACTCGAGGAGGCGCCCTTCTGCTCAGGG
GAGCGCAGCCGTTTCGTGACCTGGGGCGACCTCGAGGTCGTGTTCACCGA
GGACGAACTCGACTCGGGCGAGTCGCGGTTCACCCAGTGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118982:8..547+

>mRNA_M-pyrifera_M_contig118982.3901.1 ID=mRNA_M-pyrifera_M_contig118982.3901.1|Name=mRNA_M-pyrifera_M_contig118982.3901.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig118982:8..547+ (Macrocystis pyrifera P11B4 male)
CTCATCGCGCTCGTCGTGGTGGTGGGCCTGATCGGGGCGGTCGTCCTGGC
CCTCGTCGCCTTCGGCGGTGACGACGGCGGCGACACGGCCACCGACACCG
ACCCGACCACCACCCTCGCCACGACCACCACGCTCGACGCGACCACCACG
GCGCCGCCCGACACGACCACCACGGCCGATCCCGACCAGACCGCGACCAC
CGTCGACCCGACCGAGACCACCACCACCACGACGTCGACGACCACCACCG
AGGCGCCGTCCACGACCACCACCCCGGTGCCCGTCGGGTCACCGGGCGAC
GTGACCCTCAGCGAGACCGGCTTGCGCCTTACCGGGGGAGAGCTCGTGCT
GTTCGATCAGAGCGAGTCCACCGTGTTCGCGGCACTCGTCGACGTGCTGG
GCGAGCCCGACGCCGACACCGGACTCGAGGAGGCGCCCTTCTGCTCAGGG
GAGCGCAGCCGTTTCGTGACCTGGGGCGACCTCGAGGTCGTGTTCACCGA
GGACGAACTCGACTCGGGCGAGTCGCGGTTCACCCAGTGGCTCATCGCGC
TCGTCGTGGTGGTGGGCCTGATCGGGGCGGTCGTCCTGGCCCTCGTCGCC
TTCGGCGGTGACGACGGCGGCGACACGGCCACCGACACCGACCCGACCAC
CACCCTCGCCACGACCACCACGCTCGACGCGACCACCACGGCGCCGCCCG
ACACGACCACCACGGCCGATCCCGACCAGACCGCGACCACCGTCGACCCG
ACCGAGACCACCACCACCACGACGTCGACGACCACCACCGAGGCGCCGTC
CACGACCACCACCCCGGTGCCCGTCGGGTCACCGGGCGACGTGACCCTCA
GCGAGACCGGCTTGCGCCTTACCGGGGGAGAGCTCGTGCTGTTCGATCAG
AGCGAGTCCACCGTGTTCGCGGCACTCGTCGACGTGCTGGGCGAGCCCGA
CGCCGACACCGGACTCGAGGAGGCGCCCTTCTGCTCAGGGGAGCGCAGCC
GTTTCGTGACCTGGGGCGACCTCGAGGTCGTGTTCACCGAGGACGAACTC
GACTCGGGCGAGTCGCGGTTCACCCAGTGG
back to top