mRNA_M-pyrifera_M_contig11895.3898.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11895.3898.1
Unique NamemRNA_M-pyrifera_M_contig11895.3898.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11895.3898.1 vs. uniprot
Match: D7FUK8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK8_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 5.430e-60
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    1 MTKLMPTIKEVKCVMNPLDGGRSTAAKEVWRRLQSGVLTSASPETKIVREYKTEACWPMVEATYVDGTVRKWWAHVLPAHTLLAEVFMYAQMAHNNPDNPANKTK 315
            M KLMPTIKEVKC+MNPLDGG STAAK+V RRLQS VLTSASP+TKIV  YK EACWPMV+ATY DGTVRKWWAHVLPA TL++EVFMYAQMA+NNPDNPANK K
Sbjct:    1 MKKLMPTIKEVKCIMNPLDGGHSTAAKDVLRRLQSNVLTSASPDTKIVGVYKYEACWPMVQATYADGTVRKWWAHVLPAQTLMSEVFMYAQMAYNNPDNPANKGK 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11895.3898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUK8_ECTSI5.430e-6083.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11895contigM-pyrifera_M_contig11895:604..2260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002870.1
Exons4
Model size318
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11895.3898.1prot_M-pyrifera_M_contig11895.3898.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11895 604..2260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.5248318-CDS-M-pyrifera_M_contig11895:603..6831622815708.5248318-CDS-M-pyrifera_M_contig11895:603..683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 604..683 +
1692277532.2666574-CDS-M-pyrifera_M_contig11895:603..6831692277532.2666574-CDS-M-pyrifera_M_contig11895:603..683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 604..683 +
1622815708.5377226-CDS-M-pyrifera_M_contig11895:1053..10841622815708.5377226-CDS-M-pyrifera_M_contig11895:1053..1084Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 1054..1084 +
1692277532.2751386-CDS-M-pyrifera_M_contig11895:1053..10841692277532.2751386-CDS-M-pyrifera_M_contig11895:1053..1084Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 1054..1084 +
1622815708.5491307-CDS-M-pyrifera_M_contig11895:1408..14901622815708.5491307-CDS-M-pyrifera_M_contig11895:1408..1490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 1409..1490 +
1692277532.2830827-CDS-M-pyrifera_M_contig11895:1408..14901692277532.2830827-CDS-M-pyrifera_M_contig11895:1408..1490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 1409..1490 +
1622815708.5636125-CDS-M-pyrifera_M_contig11895:2135..22601622815708.5636125-CDS-M-pyrifera_M_contig11895:2135..2260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 2136..2260 +
1692277532.2909951-CDS-M-pyrifera_M_contig11895:2135..22601692277532.2909951-CDS-M-pyrifera_M_contig11895:2135..2260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11895 2136..2260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11895.3898.1

>prot_M-pyrifera_M_contig11895.3898.1 ID=prot_M-pyrifera_M_contig11895.3898.1|Name=mRNA_M-pyrifera_M_contig11895.3898.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MTKLMPTIKEVKCVMNPLDGGRSTAAKEVWRRLQSGVLTSASPETKIVRE
YKTEACWPMVEATYVDGTVRKWWAHVLPAHTLLAEVFMYAQMAHNNPDNP
ANKTK*
back to top

mRNA from alignment at M-pyrifera_M_contig11895:604..2260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11895.3898.1 ID=mRNA_M-pyrifera_M_contig11895.3898.1|Name=mRNA_M-pyrifera_M_contig11895.3898.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1657bp|location=Sequence derived from alignment at M-pyrifera_M_contig11895:604..2260+ (Macrocystis pyrifera P11B4 male)
ATGACAAAGTTGATGCCAACAATCAAGGAGGTCAAATGCGTCATGAACCC
CTTGGACGGCGGCCGCAGCACGGCAGCCAAGTGAGATACAGAGGGGATGA
GAGAGAGAGGCAGAAGGGGATACTGAGGGAGGGAGGGAGGGAGAGAGACG
GAGAGGACGAGAGCGGCAGCCAGACAGATCATTTGAGCGAGAGGCAGACA
CACTAGTCGTGGACCTACGTTCTGGGAGGTGTCATCACCCGAATCGACAA
TCTTACGCGTGACAACGGCACCGATACAGCCATACTAGTCTTGTACTTGT
CCCTGGTCTTGTTTGTACTCTTGTGTGTGCTTGTTCTTGTTATTTCGCTT
ATCCTTGTTGCTGCGCTTGTCCTCGTTCTCTTTGTTTTTCCTTTTTCGCT
CTTCTTTTCGCTCGTCGTCAACGGATGCGCCACTTCTTCTGTCCGGGCAG
GGAGGTGTGGCGACGTCTCCAATCCGGAGTTGTGAGTGAAATCGACGGTC
TTCAAGTGTTTTGCATGAGTGTATCATATGCCCTGTCTTGCGGGCGACCG
GCTGAACATCCCTCGGTTATATTAGTTTCGTCGATGACTGATTTTGCGGT
AATGTACCTGGGTAGTATATTCATGTGCTTCATATACGTAGAAAATGGGT
GTGTTTATTGTTGTATGTTACATGTGTTTGGGTTTGTTGTTTATGTTCGT
GTGCGTTTGTGTCGGCTTTCATTTGTTTATTTTTGGGTTTGATTGAGTGT
CTGAGTGTGTGCGTGTGTGCTTACCTCGGCCGTCGGCTACTCGTCCGTCG
AACAGCTAACGAGCGCCAGCCCGGAAACGAAGATCGTCCGCGAATACAAG
ACCGAGGCCTGCTGGCCCATGGTTGAGGCTACGTACGGTGAGTCTCCCGC
TGCCAGCACCAATGCTATCGCCAACACTAATGCTAACGGCAACGCTAAAC
GCTAAACGATGTAGCCAACGCTCAACACTACGAGCGTTAACAACGGCGCT
GTAGCTGACGCTAACGCCAATGCCAATGCTGACGCTGAACGTAGTGCTGA
CGCTAATGTTGTCGCAAGACGATAACGATATATCTCTATCGGTAACGATG
ATGCTATCGCTGACGCTGGCACCGATGCTGACGCTGGAAGACTTTAGGGG
TCCCAGCGCTTCTGTTGTGCTCACGACGCTTGTTCACGCTCATCCTAACG
TTGTTGCTACGTAACGCTAGCGCACAGTGCGAACGCTTTTGCCAACGCCA
GCTGCTGGCGATGATGCCGACGCTAAATGCTAACGATAAAGCCCAACATT
AAGGGTGATGCTATTACTAATTATAATTCTAGCGCTAACCCCAATGCTAG
CTCTAAACGCTAACGCTGAAGCCAACGCATACCAATGCTGATGCTCACGT
AAATGCTAGCACTAACTCTATTTTCTTATGGCAAACGCCAACCCTAACGA
GGCGTTACGACGATAACGACGGCGACTGTTTTTTTCCTTCGTTCCGTTTC
CGTTTCCGTTTCCGTTTCATTCGTTTTTGCAGTGGATGGTACGGTAAGGA
AGTGGTGGGCGCACGTTCTCCCCGCGCACACGCTGTTGGCGGAAGTTTTC
ATGTACGCACAGATGGCGCACAACAATCCCGACAATCCGGCTAACAAAAC
TAAATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11895:604..2260+

>mRNA_M-pyrifera_M_contig11895.3898.1 ID=mRNA_M-pyrifera_M_contig11895.3898.1|Name=mRNA_M-pyrifera_M_contig11895.3898.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig11895:604..2260+ (Macrocystis pyrifera P11B4 male)
ATGACAAAGTTGATGCCAACAATCAAGGAGGTCAAATGCGTCATGAACCC
CTTGGACGGCGGCCGCAGCACGGCAGCCAAATGACAAAGTTGATGCCAAC
AATCAAGGAGGTCAAATGCGTCATGAACCCCTTGGACGGCGGCCGCAGCA
CGGCAGCCAAGGAGGTGTGGCGACGTCTCCAATCCGGAGTTGGAGGTGTG
GCGACGTCTCCAATCCGGAGTTCTAACGAGCGCCAGCCCGGAAACGAAGA
TCGTCCGCGAATACAAGACCGAGGCCTGCTGGCCCATGGTTGAGGCTACG
TACGCTAACGAGCGCCAGCCCGGAAACGAAGATCGTCCGCGAATACAAGA
CCGAGGCCTGCTGGCCCATGGTTGAGGCTACGTACGTGGATGGTACGGTA
AGGAAGTGGTGGGCGCACGTTCTCCCCGCGCACACGCTGTTGGCGGAAGT
TTTCATGTACGCACAGATGGCGCACAACAATCCCGACAATCCGGCTAACA
AAACTAAATAGTGGATGGTACGGTAAGGAAGTGGTGGGCGCACGTTCTCC
CCGCGCACACGCTGTTGGCGGAAGTTTTCATGTACGCACAGATGGCGCAC
AACAATCCCGACAATCCGGCTAACAAAACTAAATAG
back to top