mRNA_M-pyrifera_M_contig118912.3886.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118912.3886.1
Unique NamemRNA_M-pyrifera_M_contig118912.3886.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A1Y1YB28_9FUNG (RING-type domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YB28_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 3.270e-9
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   25 SATTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRK 132
            SA +C +C  PR+ TTA PCGHLFCW C+C WC  K
Sbjct:  271 SAQSCTLCLSPRKDTTATPCGHLFCWTCICEWCRNK 306          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A0L0H882_SPIPD (RING-type domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H882_SPIPD)

HSP 1 Score: 56.6 bits (135), Expect = 4.070e-8
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1
Query:   37 CVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRK 132
            C++C  PRR TTA PCGHLFCW+C+  WC  K
Sbjct:  266 CMLCLSPRRHTTATPCGHLFCWNCIAEWCRNK 297          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A8H7UBL1_MORIS (RING-type domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UBL1_MORIS)

HSP 1 Score: 56.6 bits (135), Expect = 4.290e-8
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 1
Query:   28 ATTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRK 132
            A  C +C  PR+ TTA PCGHLFCWDCV  WC  K
Sbjct:  314 ALKCALCLEPRKVTTATPCGHLFCWDCVVEWCHNK 348          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A4V1J1Z8_9FUNG (RING-type domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4V1J1Z8_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 7.070e-8
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1
Query:   37 CVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRK 132
            C +C  PR+ TTA PCGH+FCW C+C+WC  K
Sbjct:  183 CALCLAPRQHTTATPCGHMFCWLCICQWCQTK 214          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A8C9RMG4_SCLFO (Peroxisomal biogenesis factor 10 n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RMG4_SCLFO)

HSP 1 Score: 55.8 bits (133), Expect = 7.760e-8
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1
Query:    1 QSAAAPPASATTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRK 132
            Q A  P A A  C++C   RR +TA PCGHLFCW+C+  WC  K
Sbjct:  260 QPAEPPGAKAARCILCLEQRRHSTATPCGHLFCWECITEWCNTK 303          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: D2HPP3_AILME (Peroxin-2 (Fragment) n=9 Tax=Caniformia TaxID=379584 RepID=D2HPP3_AILME)

HSP 1 Score: 54.7 bits (130), Expect = 1.980e-7
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   31 TTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRKV 135
            +TC +C   RR +TA PCGHLFCW+C+ +WC  KV
Sbjct:  281 STCTLCLEERRHSTATPCGHLFCWECITQWCDTKV 315          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A8D0DKT8_9SAUR (Peroxin-2 n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DKT8_9SAUR)

HSP 1 Score: 54.7 bits (130), Expect = 2.030e-7
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1
Query:   37 CVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRKV 135
            C++C   RR TTA PCGHLFCW+C+  WC  KV
Sbjct:  281 CILCLEERRHTTATPCGHLFCWECITEWCNTKV 313          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A8H7UM68_9FUNG (Peroxin-2 n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UM68_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-7
Identity = 22/36 (61.11%), Postives = 23/36 (63.89%), Query Frame = 1
Query:   28 ATTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRKV 135
            A  C +C   R  TTA PCGHLFCWDCV  WC  KV
Sbjct:  344 ALKCALCLESRTITTATPCGHLFCWDCVVEWCQNKV 379          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: UPI0003316B4A (peroxisome biogenesis factor 10 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003316B4A)

HSP 1 Score: 53.1 bits (126), Expect = 3.020e-7
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 1
Query:   22 ASATTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRK 132
            A  + C +C   RR TTA PCGHLFCW+C+ +WC  K
Sbjct:  117 ARGSVCTLCLEERRHTTATPCGHLFCWECITQWCDTK 153          
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Match: A0A6G1AYP2_CROCR (Peroxin-2 (Fragment) n=1 Tax=Crocuta crocuta TaxID=9678 RepID=A0A6G1AYP2_CROCR)

HSP 1 Score: 53.9 bits (128), Expect = 3.760e-7
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   19 PASATTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRKVRV 141
            P+  + C +C   RR +TA PCGHLFCW+C+ +WC  KV V
Sbjct:  283 PSRNSLCTLCLEERRHSTATPCGHLFCWECITQWCDTKVGV 323          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118912.3886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1YB28_9FUNG3.270e-961.11RING-type domain-containing protein n=1 Tax=Basidi... [more]
A0A0L0H882_SPIPD4.070e-862.50RING-type domain-containing protein n=2 Tax=Spizel... [more]
A0A8H7UBL1_MORIS4.290e-862.86RING-type domain-containing protein n=1 Tax=Mortie... [more]
A0A4V1J1Z8_9FUNG7.070e-859.38RING-type domain-containing protein n=1 Tax=Syncep... [more]
A0A8C9RMG4_SCLFO7.760e-852.27Peroxisomal biogenesis factor 10 n=1 Tax=Scleropag... [more]
D2HPP3_AILME1.980e-757.14Peroxin-2 (Fragment) n=9 Tax=Caniformia TaxID=3795... [more]
A0A8D0DKT8_9SAUR2.030e-760.61Peroxin-2 n=2 Tax=Salvator merianae TaxID=96440 Re... [more]
A0A8H7UM68_9FUNG2.840e-761.11Peroxin-2 n=1 Tax=Umbelopsis vinacea TaxID=44442 R... [more]
UPI0003316B4A3.020e-754.05peroxisome biogenesis factor 10 n=1 Tax=Sorex aran... [more]
A0A6G1AYP2_CROCR3.760e-751.22Peroxin-2 (Fragment) n=1 Tax=Crocuta crocuta TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118912contigM-pyrifera_M_contig118912:42..182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.9240203-CDS-M-pyrifera_M_contig118912:41..1821622815707.9240203-CDS-M-pyrifera_M_contig118912:41..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118912 42..182 -
1692277531.9818668-CDS-M-pyrifera_M_contig118912:41..1821692277531.9818668-CDS-M-pyrifera_M_contig118912:41..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118912 42..182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118912.3886.1prot_M-pyrifera_M_contig118912.3886.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118912 42..182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118912.3886.1

>prot_M-pyrifera_M_contig118912.3886.1 ID=prot_M-pyrifera_M_contig118912.3886.1|Name=mRNA_M-pyrifera_M_contig118912.3886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
QSAAAPPASATTCVVCHGPRRFTTAAPCGHLFCWDCVCRWCIRKVRV
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mRNA from alignment at M-pyrifera_M_contig118912:42..182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118912.3886.1 ID=mRNA_M-pyrifera_M_contig118912.3886.1|Name=mRNA_M-pyrifera_M_contig118912.3886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig118912:42..182- (Macrocystis pyrifera P11B4 male)
CAGTCCGCCGCCGCCCCGCCCGCGTCGGCCACCACGTGCGTGGTGTGCCA CGGCCCCCGTCGCTTCACCACGGCTGCACCGTGCGGCCACCTGTTCTGCT GGGACTGCGTGTGCAGGTGGTGCATCAGGAAGGTGCGAGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118912:42..182-

>mRNA_M-pyrifera_M_contig118912.3886.1 ID=mRNA_M-pyrifera_M_contig118912.3886.1|Name=mRNA_M-pyrifera_M_contig118912.3886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig118912:42..182- (Macrocystis pyrifera P11B4 male)
CAGTCCGCCGCCGCCCCGCCCGCGTCGGCCACCACGTGCGTGGTGTGCCA
CGGCCCCCGTCGCTTCACCACGGCTGCACCGTGCGGCCACCTGTTCTGCT
GGGACTGCGTGTGCAGGTGGTGCATCAGGAAGGTGCGAGTTCAGTCCGCC
GCCGCCCCGCCCGCGTCGGCCACCACGTGCGTGGTGTGCCACGGCCCCCG
TCGCTTCACCACGGCTGCACCGTGCGGCCACCTGTTCTGCTGGGACTGCG
TGTGCAGGTGGTGCATCAGGAAGGTGCGAGTT
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