mRNA_M-pyrifera_M_contig118905.3884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118905.3884.1
Unique NamemRNA_M-pyrifera_M_contig118905.3884.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: G7YEK6_CLOSI (ADP-ribosylation factor 1 n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=G7YEK6_CLOSI)

HSP 1 Score: 155 bits (391), Expect = 1.270e-47
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG +F+ LFN    KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGQVFSNLFNRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87
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BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: A0A0R3SQ53_HYMDI (ADP-ribosylation factor n=9 Tax=cellular organisms TaxID=131567 RepID=A0A0R3SQ53_HYMDI)

HSP 1 Score: 158 bits (399), Expect = 1.320e-47
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MGSIF KLF+    KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K +NFTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGSIFTKLFDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVNFTVWDVGGQDKIRPLWRHYFQNTQG 87
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BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: F6U3B3_CIOIN (Uncharacterized protein n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6U3B3_CIOIN)

HSP 1 Score: 154 bits (390), Expect = 1.860e-47
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG  FAKLF+    KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGGSFAKLFSSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: UPI00155EA612 (ADP-ribosylation factor 1-like n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155EA612)

HSP 1 Score: 154 bits (390), Expect = 2.530e-47
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG+IFA LF     KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGNIFASLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: A0A250YMI1_CASCN (ADP-ribosylation factor-like protein 17 n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A250YMI1_CASCN)

HSP 1 Score: 154 bits (390), Expect = 2.610e-47
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG+IFA LF     KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: A0A1W7RJJ5_AGKCO (ADP-ribosylation factor n=1 Tax=Agkistrodon contortrix contortrix TaxID=8713 RepID=A0A1W7RJJ5_AGKCO)

HSP 1 Score: 154 bits (390), Expect = 2.610e-47
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG+IFA LF     KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: UPI0007DA9894 (ADP-ribosylation factor 1 isoform X1 n=2 Tax=Amniota TaxID=32524 RepID=UPI0007DA9894)

HSP 1 Score: 154 bits (390), Expect = 2.950e-47
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG+IFA LF     KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: UPI001C8AFE16 (ADP-ribosylation factor 1-like n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8AFE16)

HSP 1 Score: 155 bits (391), Expect = 3.110e-47
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 MGSIFAKLFNP--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG+IFA LF    KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    1 MGNIFANLFKVFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: V5IEQ3_IXORI (Putative sarcomere (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=V5IEQ3_IXORI)

HSP 1 Score: 154 bits (390), Expect = 3.240e-47
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG+IFA LF     KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    2 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Match: A0A212D9H4_CEREH (Uncharacterized protein (Fragment) n=2 Tax=Artiodactyla TaxID=91561 RepID=A0A212D9H4_CEREH)

HSP 1 Score: 154 bits (390), Expect = 3.240e-47
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MGSIFAKLFNP---KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE*KKINFTVWDVGGQDKIRPLWRHYFQNTQG 252
            MG++F KLF     KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE K I+FTVWDVGGQDKIRPLWRHYFQNTQG
Sbjct:    7 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118905.3884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G7YEK6_CLOSI1.270e-4787.36ADP-ribosylation factor 1 n=1 Tax=Clonorchis sinen... [more]
A0A0R3SQ53_HYMDI1.320e-4789.66ADP-ribosylation factor n=9 Tax=cellular organisms... [more]
F6U3B3_CIOIN1.860e-4788.51Uncharacterized protein n=1 Tax=Ciona intestinalis... [more]
UPI00155EA6122.530e-4788.51ADP-ribosylation factor 1-like n=1 Tax=Etheostoma ... [more]
A0A250YMI1_CASCN2.610e-4788.51ADP-ribosylation factor-like protein 17 n=1 Tax=Ca... [more]
A0A1W7RJJ5_AGKCO2.610e-4788.51ADP-ribosylation factor n=1 Tax=Agkistrodon contor... [more]
UPI0007DA98942.950e-4788.51ADP-ribosylation factor 1 isoform X1 n=2 Tax=Amnio... [more]
UPI001C8AFE163.110e-4789.53ADP-ribosylation factor 1-like n=1 Tax=Puntigrus t... [more]
V5IEQ3_IXORI3.240e-4788.51Putative sarcomere (Fragment) n=1 Tax=Ixodes ricin... [more]
A0A212D9H4_CEREH3.240e-4787.36Uncharacterized protein (Fragment) n=2 Tax=Artioda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118905contigM-pyrifera_M_contig118905:4..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score97.8
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog7897.ENSLACP00000021634
KEGG koko:K07937
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phospholipase D activator activity
EggNOG OGs38BDM@33154,3BC0T@33208,3CRK7@33213,4875I@7711,48XW5@7742,COG1100@1,KOG0070@2759
COG Functional cat.U
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons2
Model size252
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118905.3884.1prot_M-pyrifera_M_contig118905.3884.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118905 4..168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.8357925-CDS-M-pyrifera_M_contig118905:3..1681622815707.8357925-CDS-M-pyrifera_M_contig118905:3..168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118905 4..168 +
1692277531.9385328-CDS-M-pyrifera_M_contig118905:3..1681692277531.9385328-CDS-M-pyrifera_M_contig118905:3..168Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118905 4..168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.8492854-UTR-M-pyrifera_M_contig118905:168..2131622815707.8492854-UTR-M-pyrifera_M_contig118905:168..213Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118905 169..213 +
1692277531.9494655-UTR-M-pyrifera_M_contig118905:168..2131692277531.9494655-UTR-M-pyrifera_M_contig118905:168..213Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118905 169..213 +
1622815707.8588836-UTR-M-pyrifera_M_contig118905:476..5181622815707.8588836-UTR-M-pyrifera_M_contig118905:476..518Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118905 477..518 +
1692277531.9588819-UTR-M-pyrifera_M_contig118905:476..5181692277531.9588819-UTR-M-pyrifera_M_contig118905:476..518Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118905 477..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118905.3884.1

>prot_M-pyrifera_M_contig118905.3884.1 ID=prot_M-pyrifera_M_contig118905.3884.1|Name=mRNA_M-pyrifera_M_contig118905.3884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MGSIFAKLFNPKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV
ETVE*
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mRNA from alignment at M-pyrifera_M_contig118905:4..518+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118905.3884.1 ID=mRNA_M-pyrifera_M_contig118905.3884.1|Name=mRNA_M-pyrifera_M_contig118905.3884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=515bp|location=Sequence derived from alignment at M-pyrifera_M_contig118905:4..518+ (Macrocystis pyrifera P11B4 male)
ATGGGTTCCATCTTTGCTAAGCTCTTCAACCCCAAGAAGGAGATGCGCAT
CCTGATGGTTGGCCTCGATGCCGCCGGCAAGACCACCATCCTCTACAAGC
TCAAGCTGGGCGAGATCGTCACCACCATTCCCACCATTGGCTTCAACGTG
GAGACGGTCGAGTAAAAGAAGATCAACTTCACCGTTTGGGACGTCGGCGG
TCAGGACAAGGTGCGCCTTCTTCGCCTCCACTGTTCCTCTCCCTCGCCTC
TCCTTCTCGTTCACCTTTGGTCTAGTCCCTTTTCTGCTTCGTCTCCTCCC
TTCGCTCCGCTCTTCCCTGCCTTCCTTTGTGTATCTCCATCCCTTGTCTC
TTTCCCTTGCGCCTCACGCCACTCTGTCACTTCCCCGCTTGCAGTTCTGT
GTTCTCTGTGCTCGACCCCGCTTGCGCAGTTCACTAGCTCTACCAATGCT
AGGCTCCTGACCTTTTTGTGCAGATCCGTCCGCTCTGGAGGCACTACTTC
CAGAACACCCAGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118905:4..518+

>mRNA_M-pyrifera_M_contig118905.3884.1 ID=mRNA_M-pyrifera_M_contig118905.3884.1|Name=mRNA_M-pyrifera_M_contig118905.3884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig118905:4..518+ (Macrocystis pyrifera P11B4 male)
ATGGGTTCCATCTTTGCTAAGCTCTTCAACCCCAAGAAGGAGATGCGCAT
CCTGATGGTTGGCCTCGATGCCGCCGGCAAGACCACCATCCTCTACAAGC
TCAAGCTGGGCGAGATCGTCACCACCATTCCCACCATTGGCTTCAACGTG
GAGACGGTCGAGTAAATGGGTTCCATCTTTGCTAAGCTCTTCAACCCCAA
GAAGGAGATGCGCATCCTGATGGTTGGCCTCGATGCCGCCGGCAAGACCA
CCATCCTCTACAAGCTCAAGCTGGGCGAGATCGTCACCACCATTCCCACC
ATTGGCTTCAACGTGGAGACGGTCGAGTAA
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