mRNA_M-pyrifera_M_contig1189.3882.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1189.3882.1
Unique NamemRNA_M-pyrifera_M_contig1189.3882.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1189.3882.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 4.880e-52
Identity = 97/153 (63.40%), Postives = 111/153 (72.55%), Query Frame = 1 
Query:    1 MDDPPLPTCWAGLQAMGTLLGTMCGFVSAVLLTPSQG-ETTGGLPAAPGVIVGASLGVLAAHSAGESNQTLRQLIYLPIFTVGAAAAMTAVIYWLAGDVVSLSLAHRSIVQGGTLGVIVLAAAASLGPTAVFTVHNHNMLLRRAS---AFDDR 447
            MDD   PTCWAG+QAMGTLLGTM GFVSA LLTP  G E   GLPAAPGVI+G+SLGVLAA+SAGE  Q LRQL+YL + +VGAAA  TA   WL GDV+           GG++G++VLA  ASLG TAVFT+  HNMLL RA+   AFDDR
Sbjct:    1 MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIDGGEREHGLPAAPGVIMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQ---------NGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDR 144
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1189.3882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI4.880e-5263.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1189contigM-pyrifera_M_contig1189:16576..21202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Exons4
Model size447
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1189.3882.1prot_M-pyrifera_M_contig1189.3882.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1189 16576..21202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.718946-CDS-M-pyrifera_M_contig1189:16575..166171622815707.718946-CDS-M-pyrifera_M_contig1189:16575..16617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 16576..16617 +
1692277531.872009-CDS-M-pyrifera_M_contig1189:16575..166171692277531.872009-CDS-M-pyrifera_M_contig1189:16575..16617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 16576..16617 +
1622815707.7333298-CDS-M-pyrifera_M_contig1189:16801..169061622815707.7333298-CDS-M-pyrifera_M_contig1189:16801..16906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 16802..16906 +
1692277531.8922625-CDS-M-pyrifera_M_contig1189:16801..169061692277531.8922625-CDS-M-pyrifera_M_contig1189:16801..16906Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 16802..16906 +
1622815707.7472374-CDS-M-pyrifera_M_contig1189:20151..202971622815707.7472374-CDS-M-pyrifera_M_contig1189:20151..20297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 20152..20297 +
1692277531.9034522-CDS-M-pyrifera_M_contig1189:20151..202971692277531.9034522-CDS-M-pyrifera_M_contig1189:20151..20297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 20152..20297 +
1622815707.760191-CDS-M-pyrifera_M_contig1189:21048..212021622815707.760191-CDS-M-pyrifera_M_contig1189:21048..21202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 21049..21202 +
1692277531.9131615-CDS-M-pyrifera_M_contig1189:21048..212021692277531.9131615-CDS-M-pyrifera_M_contig1189:21048..21202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1189 21049..21202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1189.3882.1

>prot_M-pyrifera_M_contig1189.3882.1 ID=prot_M-pyrifera_M_contig1189.3882.1|Name=mRNA_M-pyrifera_M_contig1189.3882.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MDDPPLPTCWAGLQAMGTLLGTMCGFVSAVLLTPSQGETTGGLPAAPGVI
VGASLGVLAAHSAGESNQTLRQLIYLPIFTVGAAAAMTAVIYWLAGDVVS
LSLAHRSIVQGGTLGVIVLAAAASLGPTAVFTVHNHNMLLRRASAFDDR
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mRNA from alignment at M-pyrifera_M_contig1189:16576..21202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1189.3882.1 ID=mRNA_M-pyrifera_M_contig1189.3882.1|Name=mRNA_M-pyrifera_M_contig1189.3882.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4627bp|location=Sequence derived from alignment at M-pyrifera_M_contig1189:16576..21202+ (Macrocystis pyrifera P11B4 male)
ATGGACGATCCGCCGCTGCCGACTTGTTGGGCAGGGTTGCAGGTAAAGGA
CACATGAGCTTAGCATTTTTCCAGGCGAAGCATACTGTAGAAGGGTTTGG
CAGAACGCACCGAGAGCGAACACAATGCGTGATCATTGACAATGGCTTCG
AACGACGCAACTGGTAAATAACATACCTGGTACATGGTTCCGCGTTCCGA
ATTGTTACCACGTGTCGTAATACCAGGCGATGGGCACCTTGCTCGGCACC
ATGTGCGGCTTTGTATCTGCTGTCCTCCTGACCCCAAGCCAAGGGGAAAC
CACAGGCGGGCTACCTGCTGCTCCAGGCGTGGTGAGTTTTGCTCTGGATC
CCGTGGCAATTACACGAAGAAATTCAACCTTTGCGGAGACTATTGATACT
GCTGTAATAAGCCTTTTGAGACTTCGAAGGGTAAACTTGATGCCAAAATG
TGTCACGTACTACTTGATCAACAGGAAACAGCACTTATTGGCACCCCTTG
GCAAACAACTTCTCCTTGACATGCCTTGACTTACACCAAAACTATTAATA
TTAATACTACTCGTATAAATACCTGTGTGGTACCTGGTCTTTTAGTCTGG
ATCACTCGGCCCACACCGTTGACAGCGCACATTTTGCCTCGCTGTCTCAG
GGACGTAGTATTTGATAAAAACGAACCACTGACAGCGAACGCCACTCCGT
GCTTGGGGGATGATGATTCACCAGTATTGGTTGTTGTCCGAGTAACAGCA
GTGCAAGGAAGCCGGCGTCCCCGTTGTCTTGGCAGGTGGTCCGCGTGCCT
ACTAAGATCAATTTCTTGGGCTCGAGTCTCACCGAGTGCATACTCGTATG
GACTTTATTATTAATAGCGGAAAGCGCGACAGCGTGAGTTAGCAACAATT
GATGGATTATCGACGTGGGAATGTTGAAGGCTCACCTCCTAGGGATAGGG
ACAACTTTTGTCAATTAAACGATTTTGAGGCGTTTCAGTCGATTTTCGTC
CGCCTCAATGCCGGTCGAACAACGTTTGCACAGCAAGATATACGCGGTGT
GTATGGTGTGGAGGCAATGGACGACCACAGGAACTATACGACGTACTGCT
ACCACTACATCTGTGCTCTCAAGTGGTTGCAGGGGACACCCTGCTACTGT
GACGCAGCTTTTCGGTCCACTACATACGTCAATGAAATTGTGACGAGCTT
GTCGATCCAAAGTACCAATCGCACAGCTCGAACAACAGCAGAGACGGCGG
TGCGTGGTGGTGGCGCAGGCAAACGGTGGCGACAGCAGGCACATGCGTAC
TGCTGTCCTCTCGATTGGCTGTGAGAATTGCACTGCTGCTCAGAACAACG
GCAGAGGAGTACAGCAGTAGTTTTTTTCTGGTGGCGGTTGTTGATCGTTG
TGGTCGGTGTCGTTTGGAGTCGGGATGTCATTCATGCTGTACATGCGCCC
GCGCCCCCAGCTCTGCCTACTATCCATCCTCGGTGCTGCATCGTAGGCTC
CGATAAGATGTGCACCTCACGCGCTGGTTTGGCCTGTTACCATGCTGCTG
GGCAACAGCAGGTGGCGGTTGTTTTTGTTGGTCGTCGCGGTGGGTGTGGT
CGGGAGTCGGGATACATATATGTGCCGGCACCCCAAACTCTACCTATCCA
TCCTCCGTGATGCATCGCAGGCCCCGATACAAGCCATAGGAGAGTATACT
GCGAATGTGCCACCTCACGCGCATGGTTTTGCCTGCTGCTGCTGCTGGGC
GGCATGGCCGCAGCGATGTACAACAGCCTGCATGTCGTACTCGTAGCACG
CTCAATACGATATTTGTGCTCAGCAGCAGTTGTAACGGCACTGTTGGCCA
ATCACGGCCATTTTGCAAGTCATACGGCAAGTCATAGCTCTGCTTTGATT
GGTGCAAGCTCGAAAAGTCTTGTCTGTTTTTACGTTGTTTTTTGCTTGTA
AGTCATAAAGTTGTCCCTATTGCTTGGCCCGGTGCCATGCTGGGCTCACC
TCCTAGGGGTAGGGACAGCTTTCGCGGACTTTAATTGCGCGCCGTGCATG
TATATAAAACCCCTGTTCTGACAAGTTTGTACATTACAATGGGAATGTTT
AGTCATTCCCACTGCTAGAGACTGTAGCCAACTTTTATCAGAATCCTCGG
CAGACATCGATCGACAAAACCAACGACGCCGTCATGAAATCTGAACGGAA
TGCGCTGGTTAAGGTCTCCGACCCACCCTAGTGTCACAGCAGTGCTCACT
CCTCGGTCGGTGATATGTGGCTTGGGCTGACCAGGCGTCTGTTAAGAAAA
CATTTTGGCACTGGTCTGTAGAAGACAGACGACAAATTTTGCAAGAAGGT
ATCAGCAGCACGTGCAGTAGTGGAATTTCATATCGCCGTACCACTCACTC
TATGCGGAATTGTAAGGACTGTTGGGGTCTAAATATGACGATTAAACGGT
CCTTGCATTTGCGTCCAGATCGGTACGTATCTTTCAGCCTCGTGAATGGC
TGATCTTAGGGCAGTGGATTAATATATCACGTACTCCAACGAAATTGAAT
TGGTTTTAACACCCTCGATAATTCTTGGCAATGTTGTTCGAATGACTTCA
TTTACAAGGCGAGGTTCCAACTGTAACGCTCGTGGTGGCGTCGCTGCAGA
GGGCACTTTTCACGGGCCAGAAATGTAGATATCTCAAAACGTATAGCCAT
CCGTGTCGAAAGTCCCTCCGAAAGCCTTGGAAACTTATCATTCTTTTTCC
CCCTTTCCCGGGCCCCTCTTGTAAAAAAGTGCCTTTTTGGCGTGCGAGTT
GTAGTTCGCGAGATACGGGTATTGTTCGTAGTACGTGGGGAGGCGTTATT
TCATGGAGATTTTAATGTATAATATAATCTTTACAATTTGTTTTCAGGCC
ATACATCGGCCAATACGACGAATAATTCGACACGATAATAGAGACGTGTT
GAAATGATCTCAACAAATGGACGACGTCCATGTGACTTGTTTTGCTTCAC
GAGCCGTACAAGGTTGTTGTGAGAAACGCCAGCCAGAGTACTACTGCGAG
AACAATGTATTGAGGTCTTTGAAACCCTAGGGAATAATTTACTCTTTATG
GGAATCGTTTTTGCGCTGGTTCTCGAGAGCTGGAAAACGAAATTTGGGCA
TGGCCGTGCGTCATTACCAGACAAACAAACTACAAGGTGGATTTTTTTAG
AGTTCGCTTTTTTCGTGAACCAGGGAGAGTCGAAGTTGCCGAACGAATCA
GAAAAAAACAGAAAACTTTATCTCAAGAACCATAAAAATAACCTAAAAAA
GTCCGGTTGGTATTTCGTTCGTCTTGCCATGACGCACATCGATGCCAAAG
TTCGTTTTCCAACTCTCGAAAACCAAAGCACGAAAGTAAAGAAGTTAAAT
ATCGTCTGTCGCTGAAACCAGCTGGAACCAGCTTGTACCAAGTATACGTC
AGCTGTTGTTTCTAGGATATGCTTGTGCGTGCAATGTTGATTTTCGACGG
GCCATTCGGTCATGGCGCGCTAAAACTGACAACTGCTGTCACGTTTGTGC
GTGTTTTCGACGTGGGGCGATCGCAGATTGTCGGGGCCTCATTAGGCGTG
CTCGCGGCACATTCTGCCGGTGAGAGCAATCAGACTTTGCGGCAGCTCAT
TTACCTGCCGATTTTCACCGTGGGGGCGGCGGCAGCGATGACCGCAGTGA
TCTACTGGCTAGCGGGCGATGTGTTGAAACAGGCGAGTTTGTGCAACTCC
TTGAATCTTGAGGCATTCTGTTTTTTTCGGCCTATCACATCAAGCTTTGC
CGTGTAGAGCGATGCGCAGATTTTTTAGAGATGCTGGGGAAATATTGACC
TGGCGTCAAGCTTTAGATGATGTCCGTAGAGTGCGTCCAGCTAACAGCCT
GTTGACTAATCTGGCTTGTGCGAAGCTCCGTGCTGTCTCTTAGCGGTTCA
TCAGTACTGTAATACCTTCACACTGGAAACCGGTTCTGCCACTTGAGAGC
ACGCGCCTGATCTTGACTTGAGAACACACACCCGATCTTGATGTAGAAAC
AAGCGTTTCATTGGAAACAGAGACGGGCACGGCCGTATTACGCAGTTATG
CTGTTGTAGCGCGTAAACCACAGCATCATGTCGGCCATATATGACCAAAG
TCGTTTTTACCAAAAGACGCATCTGCCATTGTGGCAGTATCGAGCACAAT
ACGAGGAGAGATTCTGCTGCTCCTGGCGCTCGCAGTGCCGACGGGGTTGG
GGCAAGAACACTCGCACCGCCCTGATATCTCTTGAATCCATGTTTGTGTA
CTGAAGCAGGGTGGTGGCGATTGAAGACGGACATAGATGGGGTGCGGGTT
CGAGGGGTTCGTGCATTTACGTATTATCCGACACCTTCGTGTGTGCGAAA
AACCCGGTCCTCCGTAACCCCCGCTGTGTGTGATACCTCCCGAAGCCTGA
GTCCATGTCCGCAATATGATAAGCGTGTCACTCTCCCTTGCACATCGTTC
GATTGTCCAGGGCGGGACCCTCGGCGTCATTGTTTTAGCGGCAGCGGCAT
CGCTCGGCCCAACGGCGGTGTTTACCGTGCACAACCACAACATGCTGCTG
AGAAGAGCGTCCGCCTTTGACGATCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1189:16576..21202+

>mRNA_M-pyrifera_M_contig1189.3882.1 ID=mRNA_M-pyrifera_M_contig1189.3882.1|Name=mRNA_M-pyrifera_M_contig1189.3882.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig1189:16576..21202+ (Macrocystis pyrifera P11B4 male)
ATGGACGATCCGCCGCTGCCGACTTGTTGGGCAGGGTTGCAGATGGACGA
TCCGCCGCTGCCGACTTGTTGGGCAGGGTTGCAGGCGATGGGCACCTTGC
TCGGCACCATGTGCGGCTTTGTATCTGCTGTCCTCCTGACCCCAAGCCAA
GGGGAAACCACAGGCGGGCTACCTGCTGCTCCAGGCGTGGCGATGGGCAC
CTTGCTCGGCACCATGTGCGGCTTTGTATCTGCTGTCCTCCTGACCCCAA
GCCAAGGGGAAACCACAGGCGGGCTACCTGCTGCTCCAGGCGTGATTGTC
GGGGCCTCATTAGGCGTGCTCGCGGCACATTCTGCCGGTGAGAGCAATCA
GACTTTGCGGCAGCTCATTTACCTGCCGATTTTCACCGTGGGGGCGGCGG
CAGCGATGACCGCAGTGATCTACTGGCTAGCGGGCGATGTATTGTCGGGG
CCTCATTAGGCGTGCTCGCGGCACATTCTGCCGGTGAGAGCAATCAGACT
TTGCGGCAGCTCATTTACCTGCCGATTTTCACCGTGGGGGCGGCGGCAGC
GATGACCGCAGTGATCTACTGGCTAGCGGGCGATGTCGTGTCACTCTCCC
TTGCACATCGTTCGATTGTCCAGGGCGGGACCCTCGGCGTCATTGTTTTA
GCGGCAGCGGCATCGCTCGGCCCAACGGCGGTGTTTACCGTGCACAACCA
CAACATGCTGCTGAGAAGAGCGTCCGCCTTTGACGATCGCCGTGTCACTC
TCCCTTGCACATCGTTCGATTGTCCAGGGCGGGACCCTCGGCGTCATTGT
TTTAGCGGCAGCGGCATCGCTCGGCCCAACGGCGGTGTTTACCGTGCACA
ACCACAACATGCTGCTGAGAAGAGCGTCCGCCTTTGACGATCGC
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