mRNA_M-pyrifera_M_contig118877.3874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118877.3874.1
Unique NamemRNA_M-pyrifera_M_contig118877.3874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: A0A8J4PZN6_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PZN6_9MYCE)

HSP 1 Score: 165 bits (417), Expect = 3.070e-47
Identity = 77/141 (54.61%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    7 TSLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            TS   FPT +  TI    T  +DFS FQPD VV+NLGTNDF ++P P ++ F+ GY  F+  I+S Y+ +   FLACGPMIG+PCCQYVQ V   V+ A Y+D Q IL   +YGC GHPNV+GH KMA++A PII   MGW
Sbjct:  215 TSNGTFPTFYPLTIPTESTNYWDFSDFQPDAVVINLGTNDFSSEPIPPQDIFQNGYISFVNFIKSKYTNNPTFFLACGPMIGNPCCQYVQNVATTVN-AIYIDMQGILNTNDYGCNGHPNVSGHSKMASIASPIIQKNMGW 354          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: F4PQZ2_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PQZ2_CAVFA)

HSP 1 Score: 161 bits (408), Expect = 1.280e-45
Identity = 76/141 (53.90%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    7 TSLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            TS++PFPT++ RTIA +P   + F  + P  VV+NLGTNDF +QP P +  FE GY +FI  IR+ Y+  T  FLACGPMI DPCCQYVQ V  A     Y+D QDIL++ + GC GHPNV GH KMA  + PII   +GW
Sbjct:  243 TSVDPFPTYYGRTIANNPNSTWTFQDWVPQAVVINLGTNDFSSQPYPPQTVFEQGYTNFIDSIRTKYNNGTVFFLACGPMISDPCCQYVQNVATATKSI-YIDLQDILDSSDLGCNGHPNVNGHLKMAMNSLPIIQKNLGW 382          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: A0A8J4Q1J5_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q1J5_9MYCE)

HSP 1 Score: 155 bits (392), Expect = 1.650e-43
Identity = 72/135 (53.33%), Postives = 92/135 (68.15%), Query Frame = 1
Query:   25 PTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            P  +  TI    T  ++F  F PD +V+NLGTND+ +QP P++  FE+ Y DFI  I+S Y+ +   FL CGPMIGDPCC+YVQ V +AV GA Y+D Q+ILE  EYGC  HPNVAGH KMA++A PII   + W
Sbjct:  221 PELYPLTIPTESTDYWNFEDFSPDAIVINLGTNDYNSQPIPSKHYFESSYIDFIKFIKSKYANNPSFFLVCGPMIGDPCCEYVQNVADAV-GAVYIDMQNILEPNEYGCNSHPNVAGHAKMASIALPIIQKNLAW 354          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: UPI00064498D9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064498D9)

HSP 1 Score: 149 bits (376), Expect = 5.350e-41
Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   10 SLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            S+  FP  + RT+A +P+ ++DF S+QP+ VV+NLGTNDF +QPNP  + FE  Y   I  + +VY     +FL CGPMI   CC YV+ V  + D   Y+D Q+ILE  + GC GHPN++GH KM+ ++ PII  VMGW
Sbjct:  229 SVLAFPDVFPRTLATNPSLLWDFDSYQPNAVVINLGTNDFDSQPNPPADLFEQTYLQLIKTLNTVYPNQPKIFLVCGPMISGACCDYVKSVAESSDQLTYIDLQNILEPSDIGCQGHPNISGHIKMSNISLPIIQKVMGW 368          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: UPI000644D8B8 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D8B8)

HSP 1 Score: 148 bits (374), Expect = 9.940e-41
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 DPTSLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDIL-EAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            D TS   F   W RT+A + +  ++   + PD V++NLGTNDF+TQPNP R+ F   Y + +  I ++YS    +FLACGPMIGDPCC YVQ V +++DG  Y+D Q+IL  A + GC GHP   G+ KMA +A PII  VM W
Sbjct:  221 DTTSKVVFKDMWTRTLATNSSLQWEAGLYLPDAVIINLGTNDFITQPNPPRDIFIEDYTNLVKAIHNIYSNKPKIFLACGPMIGDPCCSYVQSVADSIDGVTYIDMQNILVTANDIGCRGHPGKTGNIKMANIACPIIQKVMEW 364          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: A0A8J4PQC0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PQC0_9MYCE)

HSP 1 Score: 147 bits (371), Expect = 2.140e-40
Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   22 FPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            FP  +  TI    T  +DF+ F PD VV+NLG+ND+   P+P++  FE+ + +FI  I + YS    +FL CGPMIG+PCCQY+Q +  A+  A Y+D QDIL+  +YGC GHP V GH KMAA+A PII   MGW
Sbjct:  219 FPELYPLTIPTQSTDYWDFNDFLPDAVVINLGSNDYEQLPHPSQHLFESTFIEFINYISTKYSDKPTIFLICGPMIGNPCCQYIQNIAVAIS-AVYIDMQDILKPNDYGCAGHPGVEGHAKMAAIALPIIQKNMGW 353          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: F0ZTA6_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZTA6_DICPU)

HSP 1 Score: 144 bits (363), Expect = 3.100e-39
Identity = 67/141 (47.52%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    7 TSLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            TS    P  +   +    T  +DF  FQPD VV+NLGTND+ TQP P++E F+ GY  F+  ++S Y      FL CGPMIG PCCQYV+ V + V GA Y+D + IL + + GC GHPN  GH  MA++A PII   +GW
Sbjct:  211 TSTQTMPDLYPYILPTDTTTNWDFDLFQPDAVVINLGTNDYSTQPAPSQEVFQNGYISFVNSLKSNYPNKPEFFLVCGPMIGQPCCQYVKNVSSIV-GATYIDLEGILTSDDIGCNGHPNEQGHSIMASIASPIIQKTLGW 350          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: D3AYD8_POLPP (Esterase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AYD8_POLPP)

HSP 1 Score: 144 bits (363), Expect = 4.160e-39
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    7 TSLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            TS NP P +  RT+A + +  +DF+++ PD VV+NLGTND+ TQP+P    FE  Y + I  I + Y     +FL CGPMI    C YV+ V   V+ A Y+D Q+IL+  +YGC GHPN +GH KMA +A PII  VM W
Sbjct:  224 TSTNPMPIYLPRTLANNASLEWDFANYVPDAVVINLGTNDYSTQPSPPENLFEQTYINLIQTINNWYPNKPKIFLVCGPMISGAVCDYVESVSETVESATYIDLQNILDDSDYGCNGHPNQSGHAKMAEIAYPIIQKVMQW 364          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: A0A8J4PRC7_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PRC7_9MYCE)

HSP 1 Score: 147 bits (372), Expect = 1.920e-38
Identity = 72/124 (58.06%), Postives = 87/124 (70.16%), Query Frame = 1
Query:   61 TPVYDFSSFQPDLVVVNLGTNDFL-TQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            T  +DF+ F PD VV+NLGTND+  T P P+++ FE  Y DFI  I+S Y  +   FL CGPMI DPCCQYVQ V +AVD A Y+D Q ILE  +YGC+GHPNV GH KMA++A PII   MGW
Sbjct:  721 TDYWDFNDFLPDAVVINLGTNDYDGTAPFPSKKLFEHTYIDFINFIKSKYINNPLFFLVCGPMITDPCCQYVQNVAHAVD-AIYIDMQGILEPNDYGCVGHPNVEGHAKMASIALPIIQKNMGW 843          
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Match: F4Q3Y4_CAVFA (Esterase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q3Y4_CAVFA)

HSP 1 Score: 139 bits (350), Expect = 2.460e-37
Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    7 TSLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPTREEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDGAHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW 429
            TS  PFP ++N T+A + + ++ +  FQPD VV+NLGTND+ TQP P +  F  GY  FI  ++S Y+ +   FLACGPMI +PCCQYV+++     G+ +++ Q +L     GC GHPN  GH  MA +A PII   M W
Sbjct:  208 TSQYPFPYYYNFTVANNASTIWTYEGFQPDAVVINLGTNDYSTQPAPPQSIFTQGYLAFIQLLKSKYTNNPTFFLACGPMISNPCCQYVKDIATQT-GSTFINLQGLLTPESTGCAGHPNQLGHTYMAKVAFPIIQQTMDW 347          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118877.3874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4PZN6_9MYCE3.070e-4754.61Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F4PQZ2_CAVFA1.280e-4553.90Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A8J4Q1J5_9MYCE1.650e-4353.33Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI00064498D95.350e-4147.86hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI000644D8B89.940e-4148.61hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PQC0_9MYCE2.140e-4050.00Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F0ZTA6_DICPU3.100e-3947.52Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
D3AYD8_POLPP4.160e-3947.52Esterase n=1 Tax=Polysphondylium pallidum (strain ... [more]
A0A8J4PRC7_9MYCE1.920e-3858.06Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F4Q3Y4_CAVFA2.460e-3745.39Esterase n=1 Tax=Cavenderia fasciculata (strain SH... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118877contigM-pyrifera_M_contig118877:3..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog5786.XP_003290646.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CJ6Z@1,2S3T0@2759,3X92X@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.3869696-CDS-M-pyrifera_M_contig118877:2..3501622815707.3869696-CDS-M-pyrifera_M_contig118877:2..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118877 3..350 +
1692277531.7409406-CDS-M-pyrifera_M_contig118877:2..3501692277531.7409406-CDS-M-pyrifera_M_contig118877:2..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118877 3..350 +
1622815707.4010992-CDS-M-pyrifera_M_contig118877:409..4931622815707.4010992-CDS-M-pyrifera_M_contig118877:409..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118877 410..493 +
1692277531.754299-CDS-M-pyrifera_M_contig118877:409..4931692277531.754299-CDS-M-pyrifera_M_contig118877:409..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118877 410..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118877.3874.1prot_M-pyrifera_M_contig118877.3874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118877 3..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118877.3874.1

>prot_M-pyrifera_M_contig118877.3874.1 ID=prot_M-pyrifera_M_contig118877.3874.1|Name=mRNA_M-pyrifera_M_contig118877.3874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
DPTSLNPFPTHWNRTIAVHPTPVYDFSSFQPDLVVVNLGTNDFLTQPNPT
REEFETGYYDFITDIRSVYSADTPLFLACGPMIGDPCCQYVQEVVNAVDG
AHYLDFQDILEAGEYGCIGHPNVAGHRKMAALAEPIIASVMGW*
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mRNA from alignment at M-pyrifera_M_contig118877:3..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118877.3874.1 ID=mRNA_M-pyrifera_M_contig118877.3874.1|Name=mRNA_M-pyrifera_M_contig118877.3874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=491bp|location=Sequence derived from alignment at M-pyrifera_M_contig118877:3..493+ (Macrocystis pyrifera P11B4 male)
GACCCGACTTCCCTTAATCCCTTCCCCACCCACTGGAACCGCACCATTGC AGTGCACCCAACGCCAGTGTACGACTTCTCCAGCTTCCAGCCTGACCTCG TCGTCGTCAACCTCGGCACGAACGACTTCCTCACCCAGCCCAACCCCACA CGTGAGGAGTTCGAGACAGGCTACTACGACTTCATCACGGATATTCGCAG TGTCTACAGTGCTGACACTCCCCTTTTCCTTGCCTGCGGCCCCATGATTG GCGATCCTTGCTGTCAATACGTCCAGGAAGTAGTGAATGCTGTGGACGGC GCTCATTACCTGGACTTCCAGGATATTCTGGAAGCCGGTGAATATGGTGT ACGTTAGCTCTCTGGTCGTTGCAGCATCATAGCATGGAACTGACGTTGGT GCTGCAGTGCATTGGACATCCGAATGTCGCTGGCCACCGGAAGATGGCAG CGCTTGCAGAGCCTATCATTGCGTCTGTGATGGGCTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118877:3..493+

>mRNA_M-pyrifera_M_contig118877.3874.1 ID=mRNA_M-pyrifera_M_contig118877.3874.1|Name=mRNA_M-pyrifera_M_contig118877.3874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig118877:3..493+ (Macrocystis pyrifera P11B4 male)
GACCCGACTTCCCTTAATCCCTTCCCCACCCACTGGAACCGCACCATTGC
AGTGCACCCAACGCCAGTGTACGACTTCTCCAGCTTCCAGCCTGACCTCG
TCGTCGTCAACCTCGGCACGAACGACTTCCTCACCCAGCCCAACCCCACA
CGTGAGGAGTTCGAGACAGGCTACTACGACTTCATCACGGATATTCGCAG
TGTCTACAGTGCTGACACTCCCCTTTTCCTTGCCTGCGGCCCCATGATTG
GCGATCCTTGCTGTCAATACGTCCAGGAAGTAGTGAATGCTGTGGACGGC
GCTCATTACCTGGACTTCCAGGATATTCTGGAAGCCGGTGAATATGGTGA
CCCGACTTCCCTTAATCCCTTCCCCACCCACTGGAACCGCACCATTGCAG
TGCACCCAACGCCAGTGTACGACTTCTCCAGCTTCCAGCCTGACCTCGTC
GTCGTCAACCTCGGCACGAACGACTTCCTCACCCAGCCCAACCCCACACG
TGAGGAGTTCGAGACAGGCTACTACGACTTCATCACGGATATTCGCAGTG
TCTACAGTGCTGACACTCCCCTTTTCCTTGCCTGCGGCCCCATGATTGGC
GATCCTTGCTGTCAATACGTCCAGGAAGTAGTGAATGCTGTGGACGGCGC
TCATTACCTGGACTTCCAGGATATTCTGGAAGCCGGTGAATATGGTTGCA
TTGGACATCCGAATGTCGCTGGCCACCGGAAGATGGCAGCGCTTGCAGAG
CCTATCATTGCGTCTGTGATGGGCTGGTGATGCATTGGACATCCGAATGT
CGCTGGCCACCGGAAGATGGCAGCGCTTGCAGAGCCTATCATTGCGTCTG
TGATGGGCTGGTGA
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