mRNA_M-pyrifera_M_contig118778.3868.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118778.3868.1
Unique NamemRNA_M-pyrifera_M_contig118778.3868.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: A0A2J6LEV5_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6LEV5_LACSA)

HSP 1 Score: 72.4 bits (176), Expect = 2.060e-12
Identity = 59/174 (33.91%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   31 EMPCYNVVKNTTSYEIREFATETFEAWTSAATQG-PFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLKADGDSVVDPNSDMLFARVYAQLDSPI 531
            E P Y VV + + +EIR +   T   W SA  +   F  A ++GF   F YIEGAN   +++PMT PVL      A PL++S  A+ V F++P     TP   P P   +++V    T    AV +F GFA     ++   +L  +L     S    +S   FA   AQ +SP+
Sbjct:   26 ESPQYTVVHSESEFEIRLY---TDSVWMSAPVKEISFRKATRDGFHRLFQYIEGANLNNSRVPMTVPVLTSLVPGAGPLDSS--AYVVYFYLPEKFQSTP---PLPLPELNLVPDSWTSSCKAVRQFSGFARDNNIVEEAEKLATSLSK---SPYSTSSSSSFAYSIAQYNSPL 188          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: UPI001CFA49BF (heme-binding protein 2-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA49BF)

HSP 1 Score: 67.0 bits (162), Expect = 2.480e-10
Identity = 59/181 (32.60%), Postives = 88/181 (48.62%), Query Frame = 1
Query:    7 LLFCEQKIEMPCYNVVKNTTSYEIREFATETFEAWTSAATQG-PFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLKADGDSVVDPNSDMLFARVYAQLDSP 528
            LL     IE P Y VV + + +++R +A  T   W SA+ +   F+ A   GF   F +IEGAN   ++IPMTSPV+      A PL++S  A+ V F++P      P   PTP   + +         VAV +F G+A  +  +    QL ++L+    +     SD  +A   AQ  SP
Sbjct:   22 LLVLSNAIESPKYEVVHSESDFDVRLYAEST---WMSASVRELSFEKATLFGFHRLFQFIEGANLNYSRIPMTSPVVTSIVPGAGPLHSS--AYVVRFYLPVRFQADP---PTPLPELHLKPYVWGSHYVAVRKFSGYAKDENIVHEAEQLASSLRRSPWANCTA-SDSAYAYSIAQYSSP 193          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: UPI0005FB1786 (heme-binding protein 2 n=1 Tax=Jatropha curcas TaxID=180498 RepID=UPI0005FB1786)

HSP 1 Score: 66.6 bits (161), Expect = 2.940e-10
Identity = 61/175 (34.86%), Postives = 83/175 (47.43%), Query Frame = 1
Query:   28 IEMPCYNVVKNTTSYEIREFATETFEAWTSA-ATQGPFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLKADG-DSVVDPNSDMLFARVYAQLDSP 528
            IE P Y VV   + +E+R +   T   W SA ATQ  F+ A   GF   F YI+GAN   T+IPMT+PV+      A P  +S  A++V  ++P +    P   P P   + +         VAV  F GFAN    I+   +L  +L      +V    SD  FA   AQ D+P
Sbjct:   23 IESPRYEVVHEESDFEVRLYGEST---WMSAPATQISFEKATFNGFHRLFQYIQGANLNWTRIPMTAPVVTSIVSGAGPFQSS--AYSVLLYLPVNFQADP---PVPLPELHLKPYVWASHCVAVRTFSGFANDDNIIKEAEKLAVSLNRSLLANVTIAESD--FAYSIAQYDAP 187          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: UPI000B78E47D (heme-binding protein 2-like isoform X2 n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78E47D)

HSP 1 Score: 65.9 bits (159), Expect = 8.000e-10
Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   31 EMPCYNVVKNTTSYEIREFATETFEAWTSAATQGPFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLKADGDSVVDPNSDMLFARVYAQLDSP 528
            E P Y +V+  + +E+R +A  T+ A  ++ T+  F+ A  +GF   F +I+GAN   T+IPMT PV+      A P  +S  A++V F++P+     P   P P   + +         VAV +F GFAN    +    +L  +L     +    +++  FA   AQ DSP
Sbjct:   47 EKPQYEIVRAESEFEVRLYAQSTWMA--ASVTEISFEKATLDGFHRLFQFIQGANLNWTRIPMTVPVVTGIVLGAGPFQSS--AYSVLFYLPAEFQDEP---PVPIPELHLKPFAWDSHCVAVRKFSGFANDDNIVPKAKKLADSLSRSPWTNTT-SAESKFAYSIAQYDSP 210          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: UPI001263CF69 (heme-binding protein 2-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263CF69)

HSP 1 Score: 65.5 bits (158), Expect = 8.470e-10
Identity = 60/185 (32.43%), Postives = 89/185 (48.11%), Query Frame = 1
Query:    7 LLFCEQKIEMPCYNVVKNTTSYEIREFATETFEAWTSAATQG-PFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLK----ADGDSVVDPNSDMLFARVYAQLDSP 528
            L+     IE P Y VV + + +++R +   T   W SA  +   F+ A   GF   F +IEGAN   ++IPMTSPV+      A PL++S  A+ V F++P      P   PTP   + +         VAV +F GFA  +  ++   +L  +L+    A+G S     SD  +A   AQ  SP
Sbjct:   16 LVVLSNAIESPKYEVVHSESDFDVRLYTEST---WMSAPVRELSFEKATLFGFHRLFQFIEGANLNYSRIPMTSPVVTSIVPGAGPLHSS--AYVVRFYLPVKFQADP---PTPLPELHLKPYVWDSRCVAVRKFSGFAKDENIVREAEKLAISLRRSPWANGTS-----SDSDYAYSIAQYSSP 187          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: A0A7C9DTG1_OPUST (Uncharacterized protein n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DTG1_OPUST)

HSP 1 Score: 65.5 bits (158), Expect = 9.310e-10
Identity = 57/181 (31.49%), Postives = 84/181 (46.41%), Query Frame = 1
Query:    7 LLFCEQKIEMPCYNVVKNTTSYEIREFATETFEAWTSAATQG-PFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLKADGDSVVDPNSDMLFARVYAQLDSP 528
            ++   +  E P Y VV + + +EIR +       W SA      F  A + GF   F YI+GAN   ++IPMT PVL      A PL++S  A+ V F++P     TP   P P   +++  V  +   VAV +F GFA     ++   +L  +L          ++D   A   AQ DSP
Sbjct:   23 MMVVSEATESPLYTVVHSESEFEIRFYRDS---VWMSAPVNDLSFHQATKFGFHRLFQYIQGANLNFSRIPMTKPVLTSIVPGAGPLHSS--AYVVHFYLPVKFQETP---PLPLPELNLKPVSWSSHCVAVRKFSGFARDSNVVKEAEKLATSL-GRSPWANSTSADSKHAYSIAQYDSP 194          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: A0A0K9QVV3_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QVV3_SPIOL)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-9
Identity = 50/147 (34.01%), Postives = 73/147 (49.66%), Query Frame = 1
Query:   31 EMPCYNVVKNTTSYEIREFATETFEAWTSAATQG-PFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANL 450
            E P Y+V+ + + +EIR +   T   W SA      F  A + GF   F YI+GAN   ++IPMT PVL      A PL++S  A+ V+F++P     TP   P P   +D+  +      VAV +F GFA     +    +L  +L
Sbjct:   18 ESPKYSVIHSESDFEIRVYKEST---WMSAPVDHLSFRQATKLGFHRLFQYIQGANLNSSRIPMTKPVLTSIVPEAGPLHSS--AYLVNFYLPLKFQGTP---PLPLPELDLKPISWPSHCVAVRKFSGFAGDSNVVTEADKLATSL 156          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: A0A2U1P4M8_ARTAN (SOUL heme-binding protein, Regulatory factor, effector binding domain protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P4M8_ARTAN)

HSP 1 Score: 64.7 bits (156), Expect = 1.540e-9
Identity = 55/180 (30.56%), Postives = 88/180 (48.89%), Query Frame = 1
Query:   10 LFCEQKIEMPCYNVVKNTTSYEIREFATETFEAWTSAATQGPFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLKADGDSVVDPNSDMLFARVYAQLDSPI 531
            L C +  E P Y V+   + YE+R +    +   T+   +  F +A  +GF   F YIEGAN   +++PMT PVL      A PL++S  A+ V F++P+    +P  I  P   +   + P +    AV +F GFA  K  +    +L  +L     S    +SD+ ++   AQ +SP+
Sbjct:   20 LVCSKDYESPGYTVIHTESEYEVRLYKESVW--MTAPVKETSFRSATNDGFHRLFQYIEGANLNNSRVPMTVPVLTSLVPGAGPLDSS--AYVVYFYLPAEFQASPP-IGLPELNLKPDSWPIS--CKAVRQFSGFARDKNVVSEAEKLATSLSTSQYST-SSSSDITYS--VAQYNSPL 189          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: A0A164XIP5_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164XIP5_DAUCS)

HSP 1 Score: 64.3 bits (155), Expect = 2.540e-9
Identity = 55/175 (31.43%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   31 EMPCYNVVKNTTSYEIREFATETFEAWTSAA--TQGPFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANLKADGDSVVDPNSDMLFARVYAQLDSPI 531
            E P Y +V + + YEIR +      AW  A   +Q  F+ A + GF   F YIEGAN   +++PMT PVL      A PL +S   ++V F++P     TP   P P   +++         +AV +F GFA  K  +    +L  +L     +    +S+  +A   AQ +SP+
Sbjct:   36 ESPEYTLVHSESDYEIRLYRVA---AWMIAPVKSQISFEKATRNGFHRLFQYIEGANLNSSRVPMTIPVLTSIVPGAGPLRSS--GYSVQFYLPVKFQATP---PLPLPELELEPDHWNSRCIAVRKFSGFAKDKNIVTEAEKLAISLSRSPWANYT-SSETEYAYSIAQYNSPL 201          
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Match: A0A2I0I2H1_PUNGR (heme-binding protein 2-like n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I2H1_PUNGR)

HSP 1 Score: 63.9 bits (154), Expect = 3.180e-9
Identity = 51/155 (32.90%), Postives = 75/155 (48.39%), Query Frame = 1
Query:    7 LLFCEQKIEMPCYNVVKNTTSYEIREFATETFEAWTSAATQG-PFDTAVQEGFQANFAYIEGANSQKTKIPMTSPVL------ARPLNTSDVAWNVSFFVPSSLYPTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANL 450
            LL     IE P Y +V   + +E+R +   T   W +A  +   F+ A   GF   F +IEGAN   ++IPMT PV+      A PL++S  A+ V F++P+    TP   PTP   + +     T   VA  +F GFA  +  +    QL  +L
Sbjct:   20 LLAAAGAIESPRYTIVHAESDFEVRLYGNST---WMAAPVRDLSFEKATLNGFHRLFQFIEGANLNYSRIPMTLPVVTSIVPGAGPLHSS--AYAVLFYLPAKFQATP---PTPLPELHLKPFNWTSHCVAARKFPGFAKDENIVHEAEQLAFSL 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118778.3868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2J6LEV5_LACSA2.060e-1233.91Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
UPI001CFA49BF2.480e-1032.60heme-binding protein 2-like n=1 Tax=Mangifera indi... [more]
UPI0005FB17862.940e-1034.86heme-binding protein 2 n=1 Tax=Jatropha curcas Tax... [more]
UPI000B78E47D8.000e-1030.81heme-binding protein 2-like isoform X2 n=2 Tax=Hev... [more]
UPI001263CF698.470e-1032.43heme-binding protein 2-like n=1 Tax=Pistacia vera ... [more]
A0A7C9DTG1_OPUST9.310e-1031.49Uncharacterized protein n=3 Tax=Opuntia streptacan... [more]
A0A0K9QVV3_SPIOL1.500e-934.01Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A2U1P4M8_ARTAN1.540e-930.56SOUL heme-binding protein, Regulatory factor, effe... [more]
A0A164XIP5_DAUCS2.540e-931.43Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A2I0I2H1_PUNGR3.180e-932.90heme-binding protein 2-like n=1 Tax=Punica granatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118778contigM-pyrifera_M_contig118778:1..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.0
Seed ortholog evalue3e-13
Seed eggNOG ortholog38833.XP_003059554.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SOUL heme-binding protein
EggNOG OGs2CXHJ@1,2RXJR@2759,34MJD@3041,37ZBG@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.9238548-CDS-M-pyrifera_M_contig118778:0..5341622815706.9238548-CDS-M-pyrifera_M_contig118778:0..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118778 1..534 -
1692277531.4325745-CDS-M-pyrifera_M_contig118778:0..5341692277531.4325745-CDS-M-pyrifera_M_contig118778:0..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118778 1..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118778.3868.1prot_M-pyrifera_M_contig118778.3868.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118778 1..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118778.3868.1

>prot_M-pyrifera_M_contig118778.3868.1 ID=prot_M-pyrifera_M_contig118778.3868.1|Name=mRNA_M-pyrifera_M_contig118778.3868.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
SSLLFCEQKIEMPCYNVVKNTTSYEIREFATETFEAWTSAATQGPFDTAV
QEGFQANFAYIEGANSQKTKIPMTSPVLARPLNTSDVAWNVSFFVPSSLY
PTPSSIPTPTNGVDIVAVPRTGVTVAVVEFGGFANHKEFIQAETQLRANL
KADGDSVVDPNSDMLFARVYAQLDSPIT
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mRNA from alignment at M-pyrifera_M_contig118778:1..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118778.3868.1 ID=mRNA_M-pyrifera_M_contig118778.3868.1|Name=mRNA_M-pyrifera_M_contig118778.3868.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig118778:1..534- (Macrocystis pyrifera P11B4 male)
TCCTCTCTTCTTTTCTGCGAGCAGAAGATTGAAATGCCATGCTACAATGT GGTGAAGAACACAACTTCGTATGAAATTCGTGAATTTGCAACCGAGACCT TTGAAGCTTGGACATCAGCGGCAACGCAAGGCCCTTTCGACACTGCTGTG CAAGAAGGGTTCCAAGCAAACTTTGCATACATCGAAGGAGCCAACAGTCA AAAGACAAAGATCCCAATGACGTCACCAGTGCTTGCACGACCTCTCAACA CCTCTGATGTTGCATGGAACGTGTCCTTCTTCGTTCCATCATCTCTCTAT CCAACTCCATCTTCCATCCCCACACCAACCAATGGAGTTGACATTGTTGC TGTGCCACGAACTGGAGTGACTGTAGCAGTGGTAGAATTCGGAGGATTTG CAAACCACAAAGAGTTTATCCAAGCAGAAACACAACTTCGTGCGAACCTC AAAGCTGATGGAGACAGTGTAGTTGATCCAAACTCCGACATGCTCTTTGC ACGTGTGTATGCGCAGTTGGATTCACCAATCACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118778:1..534-

>mRNA_M-pyrifera_M_contig118778.3868.1 ID=mRNA_M-pyrifera_M_contig118778.3868.1|Name=mRNA_M-pyrifera_M_contig118778.3868.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig118778:1..534- (Macrocystis pyrifera P11B4 male)
TCCTCTCTTCTTTTCTGCGAGCAGAAGATTGAAATGCCATGCTACAATGT
GGTGAAGAACACAACTTCGTATGAAATTCGTGAATTTGCAACCGAGACCT
TTGAAGCTTGGACATCAGCGGCAACGCAAGGCCCTTTCGACACTGCTGTG
CAAGAAGGGTTCCAAGCAAACTTTGCATACATCGAAGGAGCCAACAGTCA
AAAGACAAAGATCCCAATGACGTCACCAGTGCTTGCACGACCTCTCAACA
CCTCTGATGTTGCATGGAACGTGTCCTTCTTCGTTCCATCATCTCTCTAT
CCAACTCCATCTTCCATCCCCACACCAACCAATGGAGTTGACATTGTTGC
TGTGCCACGAACTGGAGTGACTGTAGCAGTGGTAGAATTCGGAGGATTTG
CAAACCACAAAGAGTTTATCCAAGCAGAAACACAACTTCGTGCGAACCTC
AAAGCTGATGGAGACAGTGTAGTTGATCCAAACTCCGACATGCTCTTTGC
ACGTGTGTATGCGCAGTTGGATTCACCAATCACATCCTCTCTTCTTTTCT
GCGAGCAGAAGATTGAAATGCCATGCTACAATGTGGTGAAGAACACAACT
TCGTATGAAATTCGTGAATTTGCAACCGAGACCTTTGAAGCTTGGACATC
AGCGGCAACGCAAGGCCCTTTCGACACTGCTGTGCAAGAAGGGTTCCAAG
CAAACTTTGCATACATCGAAGGAGCCAACAGTCAAAAGACAAAGATCCCA
ATGACGTCACCAGTGCTTGCACGACCTCTCAACACCTCTGATGTTGCATG
GAACGTGTCCTTCTTCGTTCCATCATCTCTCTATCCAACTCCATCTTCCA
TCCCCACACCAACCAATGGAGTTGACATTGTTGCTGTGCCACGAACTGGA
GTGACTGTAGCAGTGGTAGAATTCGGAGGATTTGCAAACCACAAAGAGTT
TATCCAAGCAGAAACACAACTTCGTGCGAACCTCAAAGCTGATGGAGACA
GTGTAGTTGATCCAAACTCCGACATGCTCTTTGCACGTGTGTATGCGCAG
TTGGATTCACCAATCACA
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