mRNA_M-pyrifera_M_contig118771.3867.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118771.3867.1
Unique NamemRNA_M-pyrifera_M_contig118771.3867.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A2D4JNT4_MICLE (N-acetyltransferase domain-containing protein (Fragment) n=2 Tax=Sauria TaxID=32561 RepID=A0A2D4JNT4_MICLE)

HSP 1 Score: 288 bits (737), Expect = 7.920e-96
Identity = 135/181 (74.59%), Postives = 158/181 (87.29%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRCT 543
            AG K+V HMMPDLPN G ERD+  FVE FENPA RPDG+KLYPTLV+RGTGL+ELWKTGRY+SYPP TLV+LVA+ LAL+PP+ RVYRVQRDIPMPLVTSGVE GN+RELA+AR++DLG EC++VR+RE G + IHH+VRP QVELVRRDY A  GWETFL+YE   QDIL+GLLRLR+C+
Sbjct:   14 AGFKVVAHMMPDLPNMGLERDINQFVEFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYKSYPPSTLVDLVARILALVPPWTRVYRVQRDIPMPLVTSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWETFLSYEDPEQDILIGLLRLRKCS 194
[Close]
BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A482RAZ2_9ARCH (tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RAZ2_9ARCH)

HSP 1 Score: 288 bits (737), Expect = 8.930e-95
Identity = 135/179 (75.42%), Postives = 158/179 (88.27%), Query Frame = 1 
Query:    4 GLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRC 540
            G K+VTHMMPDLPN G+ERDLEGF E FENP  RPDGLK+YPTLV+RGTGL+ELWKTG Y++YPPE LV+LVA+ LA++PP+ RVYR+QRDIPMPLVTSGVE GN+RELA+AR+RDLGL C++VR+RE G K IHHRVRP+QVEL+RRDY A  GWETFL+YE   QDILVGLLRLR+C
Sbjct:  101 GFKVVTHMMPDLPNMGWERDLEGFKEFFENPMFRPDGLKVYPTLVIRGTGLYELWKTGAYKNYPPEMLVDLVARILAMVPPWTRVYRIQRDIPMPLVTSGVEYGNLRELALARMRDLGLPCRDVRTREVGIKDIHHRVRPDQVELIRRDYYANGGWETFLSYEDPQQDILVGLLRLRKC 279
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BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A4W3IN75_CALMI (Elongator complex protein 3 n=3 Tax=Gnathostomata TaxID=7776 RepID=A0A4W3IN75_CALMI)

HSP 1 Score: 288 bits (736), Expect = 1.150e-94
Identity = 135/181 (74.59%), Postives = 158/181 (87.29%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRCT 543
            AG K+V HMMPDLPN G ERD+E F+E FENPA RPDG+KLYPTLV+RGTGL+ELWKTGRY+SY P TLVELVA+ LAL+PP+ RVYRVQRDIPMPLVTSGVE GN+RELA+AR++DLG EC++VR+RE G + IHH+VRP QVELVRRDY A  GWE+FL+YE   QDIL+GLLRLRRC+
Sbjct:   86 AGFKVVAHMMPDLPNVGLERDIEQFIEFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYKSYTPSTLVELVARILALVPPWTRVYRVQRDIPMPLVTSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWESFLSYEDPEQDILIGLLRLRRCS 266
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BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: UPI0005205E94 (elongator complex protein 3-like n=1 Tax=Cariama cristata TaxID=54380 RepID=UPI0005205E94)

HSP 1 Score: 286 bits (732), Expect = 1.570e-94
Identity = 133/181 (73.48%), Postives = 159/181 (87.85%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRCT 543
            AG K+V HMMPDLPN G ERD++ FVE FENPA RPDG+KLYPTLV+RGTGL+ELWKTGRY+SYPP TLV+LVA+ LAL+PP+ RVYRVQRDIPMPLV+SGVE GN+RELA+AR++DLG +C++VR+RE G + IHH+VRP Q+ELVRRDY A  GWETFL+YE   QDILVGLLRLR+C+
Sbjct:   17 AGFKVVAHMMPDLPNMGLERDMDQFVEFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYKSYPPSTLVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQIELVRRDYVANGGWETFLSYEDPEQDILVGLLRLRKCS 197
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BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A7S1GDJ4_9STRA (Elongator complex protein 3 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDJ4_9STRA)

HSP 1 Score: 293 bits (750), Expect = 5.670e-94
Identity = 138/181 (76.24%), Postives = 161/181 (88.95%), Query Frame = 1 
Query:    4 GLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRCTS 546
            G K+VTHMMPDLPN G+ERDLEGF E FENPA RPDGLKLYPTLV+RGTGL+ELWKTG Y++YPPE LV+LVA+ LA++PP+ RVYRVQRDIPMPLVTSGVE GN+RELAMAR+R+LGL C++VRSRE G K IHHRVRP+QVEL+RRDY A  GWETFL+YE   QDIL+GLLRLR+C++
Sbjct:  283 GFKVVTHMMPDLPNMGWERDLEGFREFFENPAFRPDGLKLYPTLVIRGTGLYELWKTGAYKNYPPEQLVDLVARVLAMVPPWTRVYRVQRDIPMPLVTSGVEHGNLRELAMARMRELGLLCRDVRSREVGIKDIHHRVRPDQVELIRRDYVANGGWETFLSYEDPQQDILIGLLRLRKCSA 463
[Close]
BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A8B9MN35_9AVES (Elongator complex protein 3 n=1 Tax=Accipiter nisus TaxID=211598 RepID=A0A8B9MN35_9AVES)

HSP 1 Score: 286 bits (732), Expect = 6.170e-94
Identity = 133/181 (73.48%), Postives = 159/181 (87.85%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRCT 543
            AG K+V HMMPDLPN G ERD++ FVE FENPA RPDG+KLYPTLV+RGTGL+ELWKTGRY+SYPP TLV+LVA+ LAL+PP+ RVYRVQRDIPMPLV+SGVE GN+RELA+AR++DLG +C++VR+RE G + IHH+VRP Q+ELVRRDY A  GWETFL+YE   QDILVGLLRLR+C+
Sbjct:   95 AGFKVVAHMMPDLPNMGLERDMDQFVEFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYKSYPPSTLVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQIELVRRDYVANGGWETFLSYEDPEQDILVGLLRLRKCS 275
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BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A0L8FYS2_OCTBM (Elongator complex protein 3 (Fragment) n=2 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8FYS2_OCTBM)

HSP 1 Score: 288 bits (738), Expect = 6.590e-94
Identity = 134/181 (74.03%), Postives = 160/181 (88.40%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRCT 543
            AG K+V+HMMPDLPN G ERD++ FVE FENPA RPDGLKLYPTLV+RGTGL+ELWKTGRY+SYPP TLV+LVA+ LAL+PP+ RVYRVQRDIPMPLVTSGVE GN+RELA+AR++DLG +C++VR+RE G + IHH+VRP +VEL+RRDY A  GWETFL+YE   QDILVGLLRLR+C+
Sbjct:  164 AGFKVVSHMMPDLPNVGLERDIQQFVEFFENPAFRPDGLKLYPTLVIRGTGLYELWKTGRYKSYPPSTLVDLVARILALIPPWTRVYRVQRDIPMPLVTSGVEHGNLRELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYEVELIRRDYVANKGWETFLSYEDPEQDILVGLLRLRKCS 344
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BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A7J9BXZ3_GOSGO (N-acetyltransferase domain-containing protein n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A7J9BXZ3_GOSGO)

HSP 1 Score: 283 bits (725), Expect = 9.830e-94
Identity = 132/180 (73.33%), Postives = 159/180 (88.33%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRC 540
            AG K+V HMMPDLPN G ERDLE F E FE+P  R DGLK+YPTLV+RGTGL+ELWKTGRYR+YPPE LV++VA+ LA++PP+ RVYRVQRDIPMPLVTSGVE+GN+RELA+AR+ DLGL+C++VR+REAG + IHH++RPE+VELVRRDY A +GWETFL+YE   QDILVGLLRLR+C
Sbjct:   35 AGFKVVAHMMPDLPNVGVERDLESFKEFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMDDLGLKCRDVRTREAGIQDIHHKIRPEEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKC 214
[Close]
BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A7L0LPI2_9SYLV (ELP3 protein (Fragment) n=7 Tax=Euteleostomi TaxID=117571 RepID=A0A7L0LPI2_9SYLV)

HSP 1 Score: 282 bits (722), Expect = 1.830e-93
Identity = 132/179 (73.74%), Postives = 157/179 (87.71%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRR 537
            AG K+V HMMPDLPN G ERD++ FVE FENPA RPDG+KLYPTLV+RGTGL+ELWKTGRYRSYPP TLV+LVA+ LAL+PP+ RVYRVQRDIPMPLV+SGVE GN+RELA+AR++DLG +C++VR+RE G + IHH+VRP QVEL+RRDY A  GWETFL+YE   +DILVGLLRLR+
Sbjct:   72 AGFKVVAHMMPDLPNVGLERDMDQFVEFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYRSYPPSTLVDLVARILALVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDLGTQCRDVRTREVGIQEIHHKVRPYQVELIRRDYVANGGWETFLSYEDPERDILVGLLRLRK 250
[Close]
BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Match: A0A4W3IK00_CALMI (Elongator complex protein 3 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3IK00_CALMI)

HSP 1 Score: 288 bits (736), Expect = 1.930e-93
Identity = 135/181 (74.59%), Postives = 158/181 (87.29%), Query Frame = 1 
Query:    1 AGLKIVTHMMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKTGRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIRELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWETFLAYEYVSQDILVGLLRLRRCT 543
            AG K+V HMMPDLPN G ERD+E F+E FENPA RPDG+KLYPTLV+RGTGL+ELWKTGRY+SY P TLVELVA+ LAL+PP+ RVYRVQRDIPMPLVTSGVE GN+RELA+AR++DLG EC++VR+RE G + IHH+VRP QVELVRRDY A  GWE+FL+YE   QDIL+GLLRLRRC+
Sbjct:  179 AGFKVVAHMMPDLPNVGLERDIEQFIEFFENPAFRPDGMKLYPTLVIRGTGLYELWKTGRYKSYTPSTLVELVARILALVPPWTRVYRVQRDIPMPLVTSGVEHGNLRELALARMKDLGTECRDVRTREVGIQEIHHKVRPYQVELVRRDYVANGGWESFLSYEDPEQDILIGLLRLRRCS 359
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118771.3867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4JNT4_MICLE7.920e-9674.59N-acetyltransferase domain-containing protein (Fra... [more]
A0A482RAZ2_9ARCH8.930e-9575.42tRNA uridine(34) 5-carboxymethylaminomethyl modifi... [more]
A0A4W3IN75_CALMI1.150e-9474.59Elongator complex protein 3 n=3 Tax=Gnathostomata ... [more]
UPI0005205E941.570e-9473.48elongator complex protein 3-like n=1 Tax=Cariama c... [more]
A0A7S1GDJ4_9STRA5.670e-9476.24Elongator complex protein 3 n=1 Tax=Bicosoecida sp... [more]
A0A8B9MN35_9AVES6.170e-9473.48Elongator complex protein 3 n=1 Tax=Accipiter nisu... [more]
A0A0L8FYS2_OCTBM6.590e-9474.03Elongator complex protein 3 (Fragment) n=2 Tax=Oct... [more]
A0A7J9BXZ3_GOSGO9.830e-9473.33N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7L0LPI2_9SYLV1.830e-9373.74ELP3 protein (Fragment) n=7 Tax=Euteleostomi TaxID... [more]
A0A4W3IK00_CALMI1.930e-9374.59Elongator complex protein 3 n=1 Tax=Callorhinchus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118771contigM-pyrifera_M_contig118771:3..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score282.3
Seed ortholog evalue1.5e-73
Seed eggNOG ortholog176946.XP_007435180.1
Preferred nameELP3
KEGG koko:K07739
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000123,GO:0000902,GO:0000904,GO:0001764,GO:0001932,GO:0002097,GO:0002098,GO:0002119,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0002926,GO:0003006,GO:0003008,GO:0003674,GO:0003824,GO:0004402,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006325,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006464,GO:0006473,GO:0006475,GO:0006518,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007409,GO:0007416,GO:0007417,GO:0007528,GO:0007610,GO:0007611,GO:0007612,GO:0007626,GO:0007635,GO:0008023,GO:0008033,GO:0008080,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0008607,GO:0009058,GO:0009059,GO:0009451,GO:0009653,GO:0009790,GO:0009791,GO:0009889,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010484,GO:0010485,GO:0010556,GO:0010769,GO:0010975,GO:0016043,GO:0016070,GO:0016407,GO:0016410,GO:0016477,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0030234,GO:0030334,GO:0030335,GO:0030431,GO:0030865,GO:0031175,GO:0031248,GO:0031323,GO:0031326,GO:0031344,GO:0031399,GO:0031974,GO:0031981,GO:0032101,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032989,GO:0032990,GO:0032991,GO:0033588,GO:0034212,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036211,GO:0040007,GO:0040011,GO:0040012,GO:0040017,GO:0040025,GO:0042048,GO:0042221,GO:0042325,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043549,GO:0043603,GO:0043604,GO:0043966,GO:0043967,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045202,GO:0045595,GO:0045664,GO:0045859,GO:0046483,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048569,GO:0048583,GO:0048589,GO:0048598,GO:0048599,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048789,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050808,GO:0050877,GO:0050890,GO:0050896,GO:0050920,GO:0051124,GO:0051128,GO:0051171,GO:0051174,GO:0051179,GO:0051239,GO:0051246,GO:0051252,GO:0051270,GO:0051272,GO:0051276,GO:0051338,GO:0051674,GO:0051704,GO:0051960,GO:0060255,GO:0060284,GO:0061564,GO:0061733,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0120035,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902493,GO:1902494,GO:1902667,GO:1903506,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000147,GO:2000289,GO:2001141
EggNOG free text desc.phosphorylase kinase regulator activity
EggNOG OGs38CUP@33154,3BDGU@33208,3CT1Y@33213,483X9@7711,48YYX@7742,COG1243@1,KOG2535@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03036
Exons1
Model size546
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.875512-UTR-M-pyrifera_M_contig118771:2..261622815706.875512-UTR-M-pyrifera_M_contig118771:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118771 3..26 +
1692277531.4111772-UTR-M-pyrifera_M_contig118771:2..261692277531.4111772-UTR-M-pyrifera_M_contig118771:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118771 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.8860075-CDS-M-pyrifera_M_contig118771:26..5481622815706.8860075-CDS-M-pyrifera_M_contig118771:26..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118771 27..548 +
1692277531.4227273-CDS-M-pyrifera_M_contig118771:26..5481692277531.4227273-CDS-M-pyrifera_M_contig118771:26..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118771 27..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118771.3867.1prot_M-pyrifera_M_contig118771.3867.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118771 27..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118771.3867.1

>prot_M-pyrifera_M_contig118771.3867.1 ID=prot_M-pyrifera_M_contig118771.3867.1|Name=mRNA_M-pyrifera_M_contig118771.3867.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MMPDLPNTGFERDLEGFVELFENPALRPDGLKLYPTLVLRGTGLFELWKT
GRYRSYPPETLVELVAQTLALLPPFVRVYRVQRDIPMPLVTSGVEEGNIR
ELAMARLRDLGLECKEVRSREAGQKLIHHRVRPEQVELVRRDYCAADGWE
TFLAYEYVSQDILVGLLRLRRCTS
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mRNA from alignment at M-pyrifera_M_contig118771:3..548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118771.3867.1 ID=mRNA_M-pyrifera_M_contig118771.3867.1|Name=mRNA_M-pyrifera_M_contig118771.3867.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig118771:3..548+ (Macrocystis pyrifera P11B4 male)
GCTGGGCTCAAGATCGTGACGCACATGATGCCTGATTTGCCCAACACTGG
GTTTGAGCGCGACTTGGAAGGGTTTGTGGAGCTGTTTGAGAACCCAGCCT
TGCGGCCAGACGGACTCAAGCTCTACCCCACGTTGGTGCTTCGTGGCACG
GGTCTGTTTGAGCTGTGGAAGACTGGTCGATATCGCTCGTACCCCCCCGA
GACGCTGGTGGAGCTTGTGGCGCAGACTCTGGCGCTACTGCCGCCATTTG
TGCGCGTGTACAGGGTGCAGCGGGACATCCCCATGCCTCTGGTGACGTCT
GGGGTGGAGGAAGGCAACATTCGCGAACTGGCCATGGCGCGGCTTCGAGA
TTTGGGCTTGGAGTGCAAGGAGGTGAGGTCGCGAGAAGCAGGTCAAAAGC
TGATCCACCACCGGGTGAGGCCGGAACAGGTGGAGCTGGTGCGAAGAGAC
TATTGCGCTGCGGATGGGTGGGAGACGTTTCTGGCCTATGAATACGTGAG
CCAGGACATTCTCGTGGGTCTTCTTCGGCTCCGACGATGCACATCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118771:3..548+

>mRNA_M-pyrifera_M_contig118771.3867.1 ID=mRNA_M-pyrifera_M_contig118771.3867.1|Name=mRNA_M-pyrifera_M_contig118771.3867.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig118771:3..548+ (Macrocystis pyrifera P11B4 male)
ATGATGCCTGATTTGCCCAACACTGGGTTTGAGCGCGACTTGGAAGGGTT
TGTGGAGCTGTTTGAGAACCCAGCCTTGCGGCCAGACGGACTCAAGCTCT
ACCCCACGTTGGTGCTTCGTGGCACGGGTCTGTTTGAGCTGTGGAAGACT
GGTCGATATCGCTCGTACCCCCCCGAGACGCTGGTGGAGCTTGTGGCGCA
GACTCTGGCGCTACTGCCGCCATTTGTGCGCGTGTACAGGGTGCAGCGGG
ACATCCCCATGCCTCTGGTGACGTCTGGGGTGGAGGAAGGCAACATTCGC
GAACTGGCCATGGCGCGGCTTCGAGATTTGGGCTTGGAGTGCAAGGAGGT
GAGGTCGCGAGAAGCAGGTCAAAAGCTGATCCACCACCGGGTGAGGCCGG
AACAGGTGGAGCTGGTGCGAAGAGACTATTGCGCTGCGGATGGGTGGGAG
ACGTTTCTGGCCTATGAATACGTGAGCCAGGACATTCTCGTGGGTCTTCT
TCGGCTCCGACGATGCACATCTATGATGCCTGATTTGCCCAACACTGGGT
TTGAGCGCGACTTGGAAGGGTTTGTGGAGCTGTTTGAGAACCCAGCCTTG
CGGCCAGACGGACTCAAGCTCTACCCCACGTTGGTGCTTCGTGGCACGGG
TCTGTTTGAGCTGTGGAAGACTGGTCGATATCGCTCGTACCCCCCCGAGA
CGCTGGTGGAGCTTGTGGCGCAGACTCTGGCGCTACTGCCGCCATTTGTG
CGCGTGTACAGGGTGCAGCGGGACATCCCCATGCCTCTGGTGACGTCTGG
GGTGGAGGAAGGCAACATTCGCGAACTGGCCATGGCGCGGCTTCGAGATT
TGGGCTTGGAGTGCAAGGAGGTGAGGTCGCGAGAAGCAGGTCAAAAGCTG
ATCCACCACCGGGTGAGGCCGGAACAGGTGGAGCTGGTGCGAAGAGACTA
TTGCGCTGCGGATGGGTGGGAGACGTTTCTGGCCTATGAATACGTGAGCC
AGGACATTCTCGTGGGTCTTCTTCGGCTCCGACGATGCACATCT
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