mRNA_M-pyrifera_M_contig118770.3866.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118770.3866.1
Unique NamemRNA_M-pyrifera_M_contig118770.3866.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A7Y1XCM0_9ACTN (TerC family protein n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1XCM0_9ACTN)

HSP 1 Score: 128 bits (322), Expect = 2.630e-34
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 IVCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRRDASVAAG 258
            +V ASNAFAILGLRAMYFLLA+ARQRFHYLSHALGG+L+FVG KM  + WYHLDTY +LG I+V LVAAIVFSERK R+   V  G
Sbjct:  238 LVFASNAFAILGLRAMYFLLANARQRFHYLSHALGGILIFVGFKMTIAPWYHLDTYFALGFIIVALVAAIVFSERKARKLGLVETG 323          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A7Y2N8U2_9ACTN (TerC family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8U2_9ACTN)

HSP 1 Score: 126 bits (317), Expect = 1.660e-33
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 1
Query:    1 IVCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRR 237
            IV A+NAFAILGLRAMYFLLADARQRFHYLSH LGG+L+FVG KM  S WYHL+T++SLGVI+ +L AAIVFSERK R+
Sbjct:  243 IVFAANAFAILGLRAMYFLLADARQRFHYLSHGLGGILIFVGLKMVISPWYHLNTFLSLGVIVAMLTAAIVFSERKARQ 321          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A7Y2DPF5_9ACTN (TerC family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DPF5_9ACTN)

HSP 1 Score: 126 bits (316), Expect = 2.040e-33
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 IVCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTR 234
            IV A+NAFAILGLRAMYFLLADARQRFHYLSHALGG+L+FVG KM  S WYHL+TY+SL +IL +LV A++FSERK R
Sbjct:  243 IVFAANAFAILGLRAMYFLLADARQRFHYLSHALGGILMFVGLKMTVSPWYHLNTYVSLAIILAMLVGAMIFSERKAR 320          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A7Y3MGC6_9ACTN (TerC family protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3MGC6_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 2.300e-33
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    4 VCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRRDASVA 252
            V ASNAFAILGLRAMYFLLA+ARQRFHYLSHALG +L+FVG KM A+ WYH+DTY+SL +I  ILVAAIV SERKT+R A+ A
Sbjct:  224 VFASNAFAILGLRAMYFLLANARQRFHYLSHALGAILIFVGLKMVAANWYHVDTYVSLAIIGGILVAAIVLSERKTKRLAAEA 306          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A7Y2GLH1_9ACTN (TerC family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GLH1_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 1.120e-32
Identity = 56/84 (66.67%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    1 IVCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRRDASVA 252
            +V ASNAFAILGLRAMYFLLA+A++RFHYLSHALGG+L+FVG KM  S WYHL+TY++LG I+ +L+ A++FSERK+R + + A
Sbjct:  242 LVFASNAFAILGLRAMYFLLANAKERFHYLSHALGGILIFVGIKMTISHWYHLNTYVALGAIIAMLIGAVLFSERKSRAELAAA 325          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A539E2E0_9ACTN (Putative TerC family integral membrane protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E2E0_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 6.170e-32
Identity = 57/84 (67.86%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    1 IVCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRRDASVA 252
            +V ASNAFAILGLRAMYFLLA+A++RFHYLSHALGG+L+FVG KMA S WYH++TY+SL +I+ +L+AAIVFS+R   R  ++A
Sbjct:  239 LVFASNAFAILGLRAMYFLLANAKERFHYLSHALGGILIFVGLKMAISHWYHMNTYVSLAIIVTMLIAAIVFSQRHANRVDALA 322          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A6I3C6V1_9ACTN (TerC/Alx family metal homeostasis membrane protein n=2 Tax=root TaxID=1 RepID=A0A6I3C6V1_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 9.090e-32
Identity = 56/76 (73.68%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   10 ASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRR 237
            ASNAFAILGLRAMYFLLA+AR RFHYLSHALGG+L+FVG KM  S W+H++TY+SLG+IL++L  A+VFSERK R+
Sbjct:  174 ASNAFAILGLRAMYFLLANARNRFHYLSHALGGILIFVGLKMTFSHWFHVNTYLSLGLILLMLALAVVFSERKARQ 249          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A350XU30_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A350XU30_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 4.080e-31
Identity = 61/79 (77.22%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 IVCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRR 237
            +V ASNAFAILGLRAMYFLLA AR RFHYLSH LG VL FVG KM  + W H+DTY+SLGVI  ILVAAI FSERKTRR
Sbjct:  237 LVFASNAFAILGLRAMYFLLATARGRFHYLSHGLGAVLAFVGLKMVLAPWVHIDTYLSLGVITAILVAAIYFSERKTRR 315          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A6J7AVM4_9ZZZZ (Unannotated protein n=3 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7AVM4_9ZZZZ)

HSP 1 Score: 120 bits (301), Expect = 4.160e-31
Identity = 56/76 (73.68%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   10 ASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRR 237
            ASNAFAILGLRAMYFLLA+AR RFHYLSHALGG+L+FVG KM  S W+H++TY+SLG+IL++L  A+VFSERK R+
Sbjct:  248 ASNAFAILGLRAMYFLLANARNRFHYLSHALGGILIFVGLKMTFSHWFHVNTYLSLGLILLMLALAVVFSERKARQ 323          
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Match: A0A7Y3GGJ9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3GGJ9_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 6.980e-30
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   40 RAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEWYHLDTYISLGVILVILVAAIVFSERKTRRDASVA 252
            RAMYFLLADARQRFHYLSHALGG+L+FVG KM  + WYH+DTY+SL +I  ILVAAIV SERKTRR A  A
Sbjct:    1 RAMYFLLADARQRFHYLSHALGGILIFVGIKMTLANWYHVDTYVSLLIIGSILVAAIVLSERKTRRLAEAA 71          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118770.3866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y1XCM0_9ACTN2.630e-3474.42TerC family protein n=3 Tax=Acidimicrobiia bacteri... [more]
A0A7Y2N8U2_9ACTN1.660e-3377.22TerC family protein n=1 Tax=Acidimicrobiales bacte... [more]
A0A7Y2DPF5_9ACTN2.040e-3376.92TerC family protein n=1 Tax=Acidimicrobiales bacte... [more]
A0A7Y3MGC6_9ACTN2.300e-3375.90TerC family protein n=2 Tax=Acidimicrobiia bacteri... [more]
A0A7Y2GLH1_9ACTN1.120e-3266.67TerC family protein n=1 Tax=Acidimicrobiales bacte... [more]
A0A539E2E0_9ACTN6.170e-3267.86Putative TerC family integral membrane protein n=1... [more]
A0A6I3C6V1_9ACTN9.090e-3273.68TerC/Alx family metal homeostasis membrane protein... [more]
A0A350XU30_9ACTN4.080e-3177.22Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A6J7AVM4_9ZZZZ4.160e-3173.68Unannotated protein n=3 Tax=freshwater metagenome ... [more]
A0A7Y3GGJ9_9ACTN6.980e-3076.06Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118770contigM-pyrifera_M_contig118770:3..266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.0
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog1313172.YM304_22760
Preferred namealx
KEGG koko:K05794
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.membrane protein terC
EggNOG OGs2GIWU@201174,COG0861@1,COG0861@2
COG Functional cat.P
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.8365164-CDS-M-pyrifera_M_contig118770:2..2661622815706.8365164-CDS-M-pyrifera_M_contig118770:2..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118770 3..266 +
1692277531.3983207-CDS-M-pyrifera_M_contig118770:2..2661692277531.3983207-CDS-M-pyrifera_M_contig118770:2..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118770 3..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118770.3866.1prot_M-pyrifera_M_contig118770.3866.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118770 3..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118770.3866.1

>prot_M-pyrifera_M_contig118770.3866.1 ID=prot_M-pyrifera_M_contig118770.3866.1|Name=mRNA_M-pyrifera_M_contig118770.3866.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
IVCASNAFAILGLRAMYFLLADARQRFHYLSHALGGVLVFVGAKMAASEW
YHLDTYISLGVILVILVAAIVFSERKTRRDASVAAGR*
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mRNA from alignment at M-pyrifera_M_contig118770:3..266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118770.3866.1 ID=mRNA_M-pyrifera_M_contig118770.3866.1|Name=mRNA_M-pyrifera_M_contig118770.3866.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig118770:3..266+ (Macrocystis pyrifera P11B4 male)
ATCGTGTGCGCGTCCAACGCCTTCGCGATCCTCGGCTTGCGGGCGATGTA CTTCCTGCTGGCCGACGCCCGCCAGCGTTTCCACTATCTCTCGCACGCCC TGGGCGGCGTGCTCGTCTTCGTCGGGGCGAAGATGGCCGCTAGCGAGTGG TACCACCTCGACACCTACATCTCGCTCGGGGTGATCCTCGTGATCCTGGT GGCCGCGATCGTGTTCAGCGAACGCAAGACCCGACGCGACGCTAGCGTGG CCGCGGGGCGTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118770:3..266+

>mRNA_M-pyrifera_M_contig118770.3866.1 ID=mRNA_M-pyrifera_M_contig118770.3866.1|Name=mRNA_M-pyrifera_M_contig118770.3866.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig118770:3..266+ (Macrocystis pyrifera P11B4 male)
ATCGTGTGCGCGTCCAACGCCTTCGCGATCCTCGGCTTGCGGGCGATGTA
CTTCCTGCTGGCCGACGCCCGCCAGCGTTTCCACTATCTCTCGCACGCCC
TGGGCGGCGTGCTCGTCTTCGTCGGGGCGAAGATGGCCGCTAGCGAGTGG
TACCACCTCGACACCTACATCTCGCTCGGGGTGATCCTCGTGATCCTGGT
GGCCGCGATCGTGTTCAGCGAACGCAAGACCCGACGCGACGCTAGCGTGG
CCGCGGGGCGTTAGATCGTGTGCGCGTCCAACGCCTTCGCGATCCTCGGC
TTGCGGGCGATGTACTTCCTGCTGGCCGACGCCCGCCAGCGTTTCCACTA
TCTCTCGCACGCCCTGGGCGGCGTGCTCGTCTTCGTCGGGGCGAAGATGG
CCGCTAGCGAGTGGTACCACCTCGACACCTACATCTCGCTCGGGGTGATC
CTCGTGATCCTGGTGGCCGCGATCGTGTTCAGCGAACGCAAGACCCGACG
CGACGCTAGCGTGGCCGCGGGGCGTTAG
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