mRNA_M-pyrifera_M_contig118767.3865.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E8N7D5_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8N7D5_9ACTN) HSP 1 Score: 84.7 bits (208), Expect = 2.320e-18 Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRR 174
RVP IMVTS LLGAVAVV GLLVS+HHGTAGGATIAG+SV QFF++LA+REA AL+R
Sbjct: 217 RVPVIMVTSMLLGAVAVVSGLLVSYHHGTAGGATIAGISVTQFFLLLAVREAAEALKR 274
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A7Y2DSL9_9ACTN (Metal ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DSL9_9ACTN) HSP 1 Score: 84.0 bits (206), Expect = 4.590e-18 Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRTR 180
RVPAIM S LLGA+AV+ GL+VSFH+GTAGGATIAG SVL+FF+VLA REAL ALRR R
Sbjct: 217 RVPAIMAASILLGALAVIAGLVVSFHYGTAGGATIAGFSVLEFFVVLAGREALVALRRAR 276
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E5NQ91_9ACTN (ABC transporter permease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NQ91_9ACTN) HSP 1 Score: 79.0 bits (193), Expect = 3.500e-16 Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRR 174
RVPAIM+TS LLGA+AVV GLLVS+H+ TAGGATIAG SV QFF+VLA+RE ALRR
Sbjct: 217 RVPAIMMTSILLGALAVVSGLLVSYHYNTAGGATIAGFSVAQFFLVLAVREITEALRR 274
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A520Y499_9ACTN (Metal ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y499_9ACTN) HSP 1 Score: 77.8 bits (190), Expect = 9.520e-16 Identity = 45/59 (76.27%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRT 177
RVP IM S LLGAVAV GLLVSFH GTAGGATIAG SVL+FF+VL REA ALRRT
Sbjct: 217 RVPLIMALSMLLGAVAVFAGLLVSFHFGTAGGATIAGFSVLEFFVVLLAREAREALRRT 275
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A4R7I3B5_9ACTN (Manganese/iron transport system permease protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I3B5_9ACTN) HSP 1 Score: 69.7 bits (169), Expect = 9.780e-13 Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRTR 180
RVP +M+ S + GAVAVV GL +SFH+GTAGGAT+AGLSV QFF+VLA E + A+R R
Sbjct: 215 RVPVMMIVSMVFGAVAVVAGLTISFHYGTAGGATMAGLSVAQFFVVLAGVEIIRAVREYR 274
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E9XAH9_9ACTN (ABC transporter permease n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XAH9_9ACTN) HSP 1 Score: 69.3 bits (168), Expect = 1.380e-12 Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIRE 153
RVP IM+ S LLGA+AV VGLL+SFH+GTAGGAT+AGL VL+FF+VLA R
Sbjct: 217 RVPVIMLVSMLLGALAVFVGLLLSFHYGTAGGATVAGLCVLEFFLVLAWRS 267
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E7QB18_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7QB18_9ACTN) HSP 1 Score: 68.9 bits (167), Expect = 1.910e-12 Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRRTR 180
RVP IM S LLG +AVV GL+VSFH+GTAGGAT+AG SVLQFFIVL +E + L + +
Sbjct: 217 RVPGIMFVSILLGILAVVAGLVVSFHYGTAGGATMAGFSVLQFFIVLVGKELIQTLNKLK 276
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A2E0EDT8_9ACTN (ABC transporter permease n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A2E0EDT8_9ACTN) HSP 1 Score: 68.9 bits (167), Expect = 2.040e-12 Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIRE 153
RVP IM+ S +GA+AV VGLL+SFH+GTAGGATIAGL VLQFF+VL IR
Sbjct: 217 RVPLIMLVSMFVGALAVFVGLLLSFHYGTAGGATIAGLCVLQFFLVLGIRS 267
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A7M3MNZ8_9ACTN (Metal ABC transporter permease n=2 Tax=Nitriliruptor sp. TaxID=2448056 RepID=A0A7M3MNZ8_9ACTN) HSP 1 Score: 68.6 bits (166), Expect = 2.800e-12 Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAALRR 174
RVP +M + L+G+V+V+ GLLVSFH+GTA ATIAGL+VL FF+VL +REA+ A+RR
Sbjct: 218 RVPVMMAVAVLVGSVSVIAGLLVSFHYGTATAATIAGLTVLLFFLVLTVREAVDAVRR 275
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Match: A0A351DFJ5_9ACTN (Metal ABC transporter permease (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351DFJ5_9ACTN) HSP 1 Score: 64.3 bits (155), Expect = 3.920e-12 Identity = 32/47 (68.09%), Postives = 42/47 (89.36%), Query Frame = 1
Query: 1 RVPAIMVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVL 141
+VP IM+ S L+G +AVV GLL+SFH+GTAGGAT+AG+SVL+FFIV+
Sbjct: 16 KVPLIMLVSILVGFIAVVAGLLISFHYGTAGGATMAGISVLEFFIVM 62 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118767.3865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig118767.3865.1 >prot_M-pyrifera_M_contig118767.3865.1 ID=prot_M-pyrifera_M_contig118767.3865.1|Name=mRNA_M-pyrifera_M_contig118767.3865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp MVTSTLLGAVAVVVGLLVSFHHGTAGGATIAGLSVLQFFIVLAIREALAAback to top mRNA from alignment at M-pyrifera_M_contig118767:6..185+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig118767.3865.1 ID=mRNA_M-pyrifera_M_contig118767.3865.1|Name=mRNA_M-pyrifera_M_contig118767.3865.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig118767:6..185+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig118767:6..185+ >mRNA_M-pyrifera_M_contig118767.3865.1 ID=mRNA_M-pyrifera_M_contig118767.3865.1|Name=mRNA_M-pyrifera_M_contig118767.3865.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig118767:6..185+ (Macrocystis pyrifera P11B4 male)back to top |