mRNA_M-pyrifera_M_contig118765.3863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118765.3863.1
Unique NamemRNA_M-pyrifera_M_contig118765.3863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A517QGJ4_9PLAN (LL-diaminopimelate aminotransferase n=10 Tax=Gimesia TaxID=1649453 RepID=A0A517QGJ4_9PLAN)

HSP 1 Score: 280 bits (716), Expect = 1.170e-91
Identity = 133/139 (95.68%), Postives = 139/139 (100.00%), Query Frame = 1
Query:    1 STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            STGE+ADIHPLWNRRHCTKFNGVSYIIQRGAEAAYS+AGKEQI+GLI+FYLENARLLREGLE+VGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGA+GEGYFRLSAFNSRDNINEAVTRFQKVVS
Sbjct:  272 STGESADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSEAGKEQIKGLIAFYLENARLLREGLESVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGAAGEGYFRLSAFNSRDNINEAVTRFQKVVS 410          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A517VNE3_9PLAN (LL-diaminopimelate aminotransferase n=11 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VNE3_9PLAN)

HSP 1 Score: 261 bits (667), Expect = 2.980e-84
Identity = 122/139 (87.77%), Postives = 134/139 (96.40%), Query Frame = 1
Query:    1 STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            ++GE A+IHPLWNRRHCTKFNGVSYIIQ+GAEA YS+ G+EQIQ LI+FYLENARLLREGLE+VGISVYGGVNAPYVWLKTPG+STSW+FFDELLQKAHLVGTPGSGFGASGEGYFRLSAFN+R+NINEAVTRFQ VVS
Sbjct:  272 ASGEPAEIHPLWNRRHCTKFNGVSYIIQKGAEAVYSEQGQEQIQSLIAFYLENARLLREGLESVGISVYGGVNAPYVWLKTPGESTSWEFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNTRNNINEAVTRFQNVVS 410          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A2E7D6G8_9PLAN (LL-diaminopimelate aminotransferase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D6G8_9PLAN)

HSP 1 Score: 248 bits (632), Expect = 5.710e-79
Identity = 115/139 (82.73%), Postives = 127/139 (91.37%), Query Frame = 1
Query:    1 STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            S+GE+  IHP+WNRRHCTKFNGVSY IQRGAEAAYSDAGK+QI  L+SFYL NA++LREGLEAVGI+VYGGVNAPYVWLKTPG STSWDFFD+LLQK HLVGTPGSGFGA+GEGYFRLSAFNSR+N+ EAV RF  VVS
Sbjct:  272 SSGESTAIHPIWNRRHCTKFNGVSYPIQRGAEAAYSDAGKQQISDLVSFYLTNAKILREGLEAVGITVYGGVNAPYVWLKTPGGSTSWDFFDQLLQKGHLVGTPGSGFGAAGEGYFRLSAFNSRENVEEAVKRFTDVVS 410          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A2E9VKV0_9PLAN (LL-diaminopimelate aminotransferase (Fragment) n=1 Tax=Rubinisphaera sp. TaxID=2024857 RepID=A0A2E9VKV0_9PLAN)

HSP 1 Score: 236 bits (601), Expect = 2.480e-77
Identity = 112/139 (80.58%), Postives = 123/139 (88.49%), Query Frame = 1
Query:    1 STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            S+G+   +H LWNRR  TKFNGVSYI+QRGAEA YS  G+EQ + LI+FYL+NARLLREGLEAVGISVYGGVNAPYVWLKTP + TSWDFFDELL KAHLVGTPGSGFGASGEGYFRLSAFNSR+NI EAV RFQK+VS
Sbjct:   45 SSGKQVSLHQLWNRRQSTKFNGVSYIVQRGAEAVYSPEGQEQTKELIAFYLDNARLLREGLEAVGISVYGGVNAPYVWLKTPKEFTSWDFFDELLNKAHLVGTPGSGFGASGEGYFRLSAFNSRENIEEAVKRFQKIVS 183          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A3B1E102_9ZZZZ (L,L-diaminopimelate aminotransferase n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1E102_9ZZZZ)

HSP 1 Score: 243 bits (621), Expect = 2.600e-77
Identity = 112/138 (81.16%), Postives = 124/138 (89.86%), Query Frame = 1
Query:    1 STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVV 414
            STGE+ DIH +WNRRHCTKFNGVSYI+Q+GAEA YS+AGK QI  LI+FYL NA+LLREGLEA G+++YGG+NAPYVWLKTP + TSWDFFD LL K HLVGTPGSGFGASGEGYFRLSAFNSRDNINEAV RFQKVV
Sbjct:  272 STGESVDIHSVWNRRHCTKFNGVSYIVQKGAEAVYSEAGKAQIAELINFYLTNAQLLREGLEAAGMTIYGGINAPYVWLKTPNNMTSWDFFDHLLSKGHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVKRFQKVV 409          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A518CRR0_9PLAN (LL-diaminopimelate aminotransferase n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A518CRR0_9PLAN)

HSP 1 Score: 235 bits (600), Expect = 3.790e-74
Identity = 112/137 (81.75%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    7 GETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            GE  DIHPLWNRRH TKFNGV Y+IQRGAEAAYS AGK QI  L+ FYLENA LLR+GLEAVGI VYGGV+APYVWLKTP   TSW+FFD LLQ+AHLVGTPGSGFGASGEGYFRLSAFNSR+N+ EAV RFQKVVS
Sbjct:  274 GELVDIHPLWNRRHSTKFNGVPYVIQRGAEAAYSPAGKAQINELVRFYLENASLLRKGLEAVGIDVYGGVDAPYVWLKTPRGLTSWEFFDRLLQQAHLVGTPGSGFGASGEGYFRLSAFNSRENVEEAVKRFQKVVS 410          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A2E7NSJ9_9PLAN (LL-diaminopimelate aminotransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NSJ9_9PLAN)

HSP 1 Score: 233 bits (595), Expect = 2.150e-73
Identity = 109/139 (78.42%), Postives = 124/139 (89.21%), Query Frame = 1
Query:    1 STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            +TGE  ++H LWNRRH TKFNGVSY +QRGAEAAYS  G+EQ+  LISFYLENARLLREGLEAVGISV+GG+NAPYVWLKTPG   SW FFD+LLQ+AHLVGTPGSGFGASGEGYFRLSAFNSR+N+ EAV RFQ++V+
Sbjct:  272 ATGERIEVHGLWNRRHSTKFNGVSYPVQRGAEAAYSSDGQEQVGQLISFYLENARLLREGLEAVGISVFGGINAPYVWLKTPGSVDSWTFFDQLLQQAHLVGTPGSGFGASGEGYFRLSAFNSRENVQEAVRRFQQLVA 410          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A5C5X9A9_9PLAN (LL-diaminopimelate aminotransferase n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5X9A9_9PLAN)

HSP 1 Score: 233 bits (594), Expect = 3.040e-73
Identity = 112/139 (80.58%), Postives = 121/139 (87.05%), Query Frame = 1
Query:    1 STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            ST +   +H LWNRR  TKFNGVSYI+QRGAEA YS  G+EQ + LI+FYL+NARLLREGLEAVGISVYGGVNAPYVWLKTP   TSWDFFDELL KAHLVGTPGSGFGASGEGYFRLSAFNSR+NI EAV RFQK+VS
Sbjct:  272 STEKQVSLHQLWNRRQSTKFNGVSYIVQRGAEAVYSPEGQEQSKALIAFYLDNARLLREGLEAVGISVYGGVNAPYVWLKTPQAFTSWDFFDELLNKAHLVGTPGSGFGASGEGYFRLSAFNSRENIEEAVKRFQKIVS 410          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A3N5R502_9PLAN (LL-diaminopimelate aminotransferase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5R502_9PLAN)

HSP 1 Score: 222 bits (566), Expect = 1.360e-72
Identity = 102/136 (75.00%), Postives = 117/136 (86.03%), Query Frame = 1
Query:    7 GETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVV 414
            GE   +H LWNRRH TKFNGVSY +QR AEA YS  GK Q++G+I FYL NARL+REGL+A GI+VYGGVNAPYVW+KTPG+ +SWDFFD LL++AHLVGTPGSGFGASGEG+FRLSAFNSR N+ EAV RFQKVV
Sbjct:    6 GERVPLHGLWNRRHTTKFNGVSYPVQRAAEAIYSPLGKTQVRGMIDFYLTNARLIREGLQAAGITVYGGVNAPYVWVKTPGNESSWDFFDRLLRQAHLVGTPGSGFGASGEGFFRLSAFNSRANVEEAVRRFQKVV 141          
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Match: A0A2E7LBH2_9PLAN (LL-diaminopimelate aminotransferase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7LBH2_9PLAN)

HSP 1 Score: 230 bits (587), Expect = 3.440e-72
Identity = 106/137 (77.37%), Postives = 122/137 (89.05%), Query Frame = 1
Query:    7 GETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFYLENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHLVGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS 417
            G+   IH LWNRR  TKFNGVSY+IQ+GA AAYSD GK+QIQ L++FY+ NARLLREGLEAVGI VYGGVNAPYVWLKTPG+ +SWDFFD+LL+++HLVGTPGSGFGASGEGYFRLSAFNSR+NI +AV RFQ +VS
Sbjct:  274 GQRESIHALWNRRQSTKFNGVSYVIQQGAAAAYSDEGKQQIQELVAFYMTNARLLREGLEAVGIQVYGGVNAPYVWLKTPGEQSSWDFFDQLLEQSHLVGTPGSGFGASGEGYFRLSAFNSRENIEQAVKRFQSLVS 410          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118765.3863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517QGJ4_9PLAN1.170e-9195.68LL-diaminopimelate aminotransferase n=10 Tax=Gimes... [more]
A0A517VNE3_9PLAN2.980e-8487.77LL-diaminopimelate aminotransferase n=11 Tax=Planc... [more]
A0A2E7D6G8_9PLAN5.710e-7982.73LL-diaminopimelate aminotransferase n=1 Tax=Planct... [more]
A0A2E9VKV0_9PLAN2.480e-7780.58LL-diaminopimelate aminotransferase (Fragment) n=1... [more]
A0A3B1E102_9ZZZZ2.600e-7781.16L,L-diaminopimelate aminotransferase n=1 Tax=hydro... [more]
A0A518CRR0_9PLAN3.790e-7481.75LL-diaminopimelate aminotransferase n=2 Tax=Planct... [more]
A0A2E7NSJ9_9PLAN2.150e-7378.42LL-diaminopimelate aminotransferase n=2 Tax=Planct... [more]
A0A5C5X9A9_9PLAN3.040e-7380.58LL-diaminopimelate aminotransferase n=1 Tax=Rubini... [more]
A0A3N5R502_9PLAN1.360e-7275.00LL-diaminopimelate aminotransferase (Fragment) n=1... [more]
A0A2E7LBH2_9PLAN3.440e-7277.37LL-diaminopimelate aminotransferase n=1 Tax=Planct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118765contigM-pyrifera_M_contig118765:3..422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score269.6
Seed ortholog evalue8e-70
Seed eggNOG ortholog344747.PM8797T_09459
Preferred namedapL
KEGG rclassRC00006,RC01847
KEGG koko:K10206
KEGG ReactionR07613
KEGG Pathwayko00300,ko01100,ko01110,ko01130,ko01230,map00300,map01100,map01110,map01130,map01230
KEGG ModuleM00527
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008483,GO:0016740,GO:0016769
EggNOG free text desc.Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate
EggNOG OGs2IX3B@203682,COG0436@1,COG0436@2
EC2.6.1.83
COG Functional cat.H
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.717456-CDS-M-pyrifera_M_contig118765:2..4221622815706.717456-CDS-M-pyrifera_M_contig118765:2..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118765 3..422 +
1692277531.3456793-CDS-M-pyrifera_M_contig118765:2..4221692277531.3456793-CDS-M-pyrifera_M_contig118765:2..422Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118765 3..422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118765.3863.1prot_M-pyrifera_M_contig118765.3863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118765 3..422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118765.3863.1

>prot_M-pyrifera_M_contig118765.3863.1 ID=prot_M-pyrifera_M_contig118765.3863.1|Name=mRNA_M-pyrifera_M_contig118765.3863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
STGETADIHPLWNRRHCTKFNGVSYIIQRGAEAAYSDAGKEQIQGLISFY
LENARLLREGLEAVGISVYGGVNAPYVWLKTPGDSTSWDFFDELLQKAHL
VGTPGSGFGASGEGYFRLSAFNSRDNINEAVTRFQKVVS*
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mRNA from alignment at M-pyrifera_M_contig118765:3..422+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118765.3863.1 ID=mRNA_M-pyrifera_M_contig118765.3863.1|Name=mRNA_M-pyrifera_M_contig118765.3863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig118765:3..422+ (Macrocystis pyrifera P11B4 male)
TCGACCGGAGAAACTGCCGATATTCATCCACTCTGGAACCGCCGACATTG CACGAAATTCAACGGCGTTTCTTACATCATCCAGCGGGGTGCGGAAGCAG CTTACTCCGATGCTGGTAAAGAGCAGATCCAGGGACTGATTTCCTTCTAT CTCGAGAATGCACGTTTGTTACGTGAAGGTCTGGAAGCAGTGGGCATCTC AGTCTATGGCGGCGTCAACGCCCCTTATGTCTGGCTCAAGACCCCCGGCG ATTCAACGAGCTGGGACTTTTTCGATGAACTGCTCCAGAAAGCACACCTC GTCGGAACGCCGGGCAGCGGCTTTGGTGCCTCAGGGGAAGGTTACTTCCG GTTAAGTGCTTTCAATAGCCGGGATAATATCAACGAAGCGGTGACCCGCT TCCAGAAAGTCGTGAGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118765:3..422+

>mRNA_M-pyrifera_M_contig118765.3863.1 ID=mRNA_M-pyrifera_M_contig118765.3863.1|Name=mRNA_M-pyrifera_M_contig118765.3863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig118765:3..422+ (Macrocystis pyrifera P11B4 male)
TCGACCGGAGAAACTGCCGATATTCATCCACTCTGGAACCGCCGACATTG
CACGAAATTCAACGGCGTTTCTTACATCATCCAGCGGGGTGCGGAAGCAG
CTTACTCCGATGCTGGTAAAGAGCAGATCCAGGGACTGATTTCCTTCTAT
CTCGAGAATGCACGTTTGTTACGTGAAGGTCTGGAAGCAGTGGGCATCTC
AGTCTATGGCGGCGTCAACGCCCCTTATGTCTGGCTCAAGACCCCCGGCG
ATTCAACGAGCTGGGACTTTTTCGATGAACTGCTCCAGAAAGCACACCTC
GTCGGAACGCCGGGCAGCGGCTTTGGTGCCTCAGGGGAAGGTTACTTCCG
GTTAAGTGCTTTCAATAGCCGGGATAATATCAACGAAGCGGTGACCCGCT
TCCAGAAAGTCGTGAGCTAGTCGACCGGAGAAACTGCCGATATTCATCCA
CTCTGGAACCGCCGACATTGCACGAAATTCAACGGCGTTTCTTACATCAT
CCAGCGGGGTGCGGAAGCAGCTTACTCCGATGCTGGTAAAGAGCAGATCC
AGGGACTGATTTCCTTCTATCTCGAGAATGCACGTTTGTTACGTGAAGGT
CTGGAAGCAGTGGGCATCTCAGTCTATGGCGGCGTCAACGCCCCTTATGT
CTGGCTCAAGACCCCCGGCGATTCAACGAGCTGGGACTTTTTCGATGAAC
TGCTCCAGAAAGCACACCTCGTCGGAACGCCGGGCAGCGGCTTTGGTGCC
TCAGGGGAAGGTTACTTCCGGTTAAGTGCTTTCAATAGCCGGGATAATAT
CAACGAAGCGGTGACCCGCTTCCAGAAAGTCGTGAGCTAG
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