mRNA_M-pyrifera_M_contig118764.3862.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118764.3862.1
Unique NamemRNA_M-pyrifera_M_contig118764.3862.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A517PY77_9PLAN (Type II secretion system protein F n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517PY77_9PLAN)

HSP 1 Score: 284 bits (727), Expect = 9.810e-94
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1
Query:    1 RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPSV 441
            RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPSV
Sbjct:  222 RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPSV 368          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A518AFM3_9PLAN (Type II secretion system protein F n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AFM3_9PLAN)

HSP 1 Score: 226 bits (576), Expect = 6.730e-71
Identity = 109/146 (74.66%), Postives = 132/146 (90.41%), Query Frame = 1
Query:    1 RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPS 438
            +L+ DMNYSTF+EMAGVLLSYH+PL+DSL+LAAE TGN K+I QFRSVAEKLEQG  +  SIQSA + P Y++SM++NPAHQN+LP +M+E+ARVY+TR LNR+EWIK+I+PV LVVLVAGGIT+CYAL+VFLPFVEILKMLGSPS
Sbjct:  222 KLIQDMNYSTFSEMAGVLLSYHVPLTDSLILAAESTGNPKLITQFRSVAEKLEQGASLGVSIQSAGQFPEYVKSMMVNPAHQNQLPGVMTEMARVYRTRALNRMEWIKHILPVALVVLVAGGITICYALIVFLPFVEILKMLGSPS 367          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A518IL68_9PLAN (Type II secretion system protein F n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IL68_9PLAN)

HSP 1 Score: 182 bits (462), Expect = 9.330e-54
Identity = 87/145 (60.00%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    4 LVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPS 438
            LV +MNYSTFAEM+G+LL+Y +PL +SL LAAE TGN+K+I +  S++  L +G  ++  IQS  + P +I+ M+M   HQN LP IMSEIARVY+ RVLNRI+WIK I+PV L++++AGGIT CY L+VF+PFVEILKMLGSP+
Sbjct:  223 LVREMNYSTFAEMSGILLTYDVPLHESLTLAAESTGNTKIITESHSLSRLLVRGTSLKEGIQSCKQFPDFIKLMMMEKTHQNHLPQIMSEIARVYRARVLNRIDWIKRIIPVTLLIVIAGGITACYTLIVFIPFVEILKMLGSPT 367          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A517VNY5_9PLAN (Type II secretion system protein F n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VNY5_9PLAN)

HSP 1 Score: 179 bits (455), Expect = 1.040e-52
Identity = 84/146 (57.53%), Postives = 116/146 (79.45%), Query Frame = 1
Query:    1 RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPS 438
             L+ +MNYSTF EM  +LLSY++PL+++  LAAE TG+SK+I   +S+   LEQG  +E  IQS    P +I++M+M   +QN LP+I+SEI+RVY+TR+LNRI+W+KNI+PV L+++VAGGIT CY ++VFLPFVEILKMLGSP+
Sbjct:  222 NLIREMNYSTFTEMTSLLLSYNVPLTEAFTLAAESTGSSKVIADTKSLTNLLEQGVSLEEGIQSCRHFPVFIKTMIMEKTYQNHLPNILSEISRVYRTRILNRIDWLKNIIPVVLLIIVAGGITACYTIIVFLPFVEILKMLGSPT 367          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A517XK83_9PLAN (Type II secretion system protein F n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517XK83_9PLAN)

HSP 1 Score: 176 bits (445), Expect = 6.050e-51
Identity = 82/146 (56.16%), Postives = 114/146 (78.08%), Query Frame = 1
Query:    1 RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPS 438
            +L+L+MNYSTF +M  +LLSYH+PL +SLVLAAE TGNSK+I + + ++ KL+ G  +   ++++   P +I+ ML+   HQN L  I SE++RVY+TRV NRI+W K I+PV L+VL+AGGIT CYA++VFLPF+E+LKMLGSPS
Sbjct:  248 KLILEMNYSTFTKMVSILLSYHVPLHESLVLAAESTGNSKLITESKLLSAKLKHGSSLPDVVRNSDFYPSFIKKMLIKNVHQNHLVRIFSEMSRVYKTRVSNRIDWAKRIIPVSLLVLIAGGITACYAIIVFLPFIELLKMLGSPS 393          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A2E2BWI3_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BWI3_9PLAN)

HSP 1 Score: 171 bits (434), Expect = 1.190e-49
Identity = 80/146 (54.79%), Postives = 114/146 (78.08%), Query Frame = 1
Query:    1 RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPS 438
            +L+ +MN+STF +M  +LLSYH+PL ++LVLAA  TGNSK+I++   +++KL+ G  +   IQ++   P YI+ ML+  AHQN L  I SEI+RVYQ+RV NRI+W+K I+P+ L+V+VAGGIT  YA++VFLPF+E+LKMLGSP+
Sbjct:  214 KLISEMNFSTFTKMISILLSYHVPLHEALVLAAGSTGNSKLISESELLSKKLKSGSSLPDGIQNSEYFPSYIKKMLIKDAHQNHLVRIFSEISRVYQSRVSNRIDWVKRILPISLLVIVAGGITASYAIIVFLPFIELLKMLGSPT 359          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A2E7D8G4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D8G4_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 1.350e-19
Identity = 40/143 (27.97%), Postives = 89/143 (62.24%), Query Frame = 1
Query:    4 LVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGS 432
            ++ + + + FA++  +L+ + +PL+++  LAA  TG  + ++   ++ ++L++G+ +  S++    +P ++  M+++   Q  +P  + +IA +Y+ R   + +W K +VP+ L+V+VAGG T+ YAL +F P  E+L+ L +
Sbjct:  207 ILRNYHLANFADLLSMLIGHQVPLAEAFSLAARATGRERFVSAAETIGKRLKEGKSLTDSLKGVDAIPSFMAWMMVSAEAQASMPRTLKQIADLYRRRAAFQADWFKMMVPIFLIVIVAGGATLLYALSLFAPLSELLRRLDA 349          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A517ZHB1_9PLAN (Type II secretion system protein F n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZHB1_9PLAN)

HSP 1 Score: 90.9 bits (224), Expect = 7.610e-19
Identity = 43/141 (30.50%), Postives = 81/141 (57.45%), Query Frame = 1
Query:   13 DMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSP 435
            +   + F+++ G+L    +PL   ++LAA+ TG+ +MI     ++ KL+ GE +  +++SA   P Y++ ++     Q  L D ++  A VY++R L R+E +   +P+  V ++ GG T+ YA  +F P +E L+ L +P
Sbjct:  219 NQQLANFSDLLGLLTEQEVPLHTGILLAADSTGDRRMIQSSEEISLKLQSGESLAEAMESAKAYPSYLRWLMQTGEQQRTLADSLTRAAGVYRSRALERLETLSLALPLIAVAVIGGGATLIYAFALFAPMIESLRNLAAP 359          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A6I6ADI7_9PLAN (T2SSF domain-containing protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ADI7_9PLAN)

HSP 1 Score: 84.3 bits (207), Expect = 1.950e-16
Identity = 42/145 (28.97%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 RLVLDMNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSP 435
            R+     Y  FAE+  +L+   IP S+S+VLAAE TG+ +++     +A++  + +   G        P  +  +L    H+  L   +   A +Y+ +  +   W + I P+    ++ GG  +CY L++FLPF ++LK LG+P
Sbjct:  218 RIASYYRYGNFAELMALLIQQQIPFSESIVLAAEATGDDQLVQSAELMADRHARSQLESGESAKFYGWPPLLTWLLTTKNHEGELSLALKNAADMYRRKAAHYTRWFRVIFPIFTGAIIGGGTVLCYCLVLFLPFTDMLKQLGNP 362          
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Match: A0A518I4S4_9PLAN (Type II secretion system protein F n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I4S4_9PLAN)

HSP 1 Score: 79.7 bits (195), Expect = 9.290e-15
Identity = 39/138 (28.26%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   22 YSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQGEGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIEWIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSP 435
            Y  F+E+  +L+  +IP ++S+VLAAE TG+ +++     +AE+    +   G        P  +  +L    HQ  L   +   A +Y+ +  +   W + + P+    ++ GG  +CY+L++FLPF ++LK L +P
Sbjct:  225 YGNFSELMSLLIQQNIPFAESIVLAAEATGDDQLVKSANLMAERHLSSQFETGDTTKEYGWPPLLTWLLTTKNHQGELSLALKNAADMYRRKATHYTRWFRVLFPIFTGTIIGGGAVLCYSLVLFLPFSDMLKQLANP 362          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118764.3862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A517PY77_9PLAN9.810e-94100.00Type II secretion system protein F n=8 Tax=Gimesia... [more]
A0A518AFM3_9PLAN6.730e-7174.66Type II secretion system protein F n=4 Tax=Gimesia... [more]
A0A518IL68_9PLAN9.330e-5460.00Type II secretion system protein F n=2 Tax=Gimesia... [more]
A0A517VNY5_9PLAN1.040e-5257.53Type II secretion system protein F n=2 Tax=Gimesia... [more]
A0A517XK83_9PLAN6.050e-5156.16Type II secretion system protein F n=5 Tax=Gimesia... [more]
A0A2E2BWI3_9PLAN1.190e-4954.79Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A2E7D8G4_9PLAN1.350e-1927.97Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A517ZHB1_9PLAN7.610e-1930.50Type II secretion system protein F n=3 Tax=Symmach... [more]
A0A6I6ADI7_9PLAN1.950e-1628.97T2SSF domain-containing protein n=7 Tax=Gimesia Ta... [more]
A0A518I4S4_9PLAN9.290e-1528.26Type II secretion system protein F n=2 Tax=Gimesia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118764contigM-pyrifera_M_contig118764:103..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score170.2
Seed ortholog evalue6.8e-40
Seed eggNOG ortholog344747.PM8797T_10799
KEGG koko:K02455,ko:K02653
KEGG TC3.A.15,3.A.15.2
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein transport across the cell outer membrane
EggNOG OGsCOG1459@1,COG1459@2
COG Functional cat.U
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02035,ko02044
Exons1
Model size444
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.671658-CDS-M-pyrifera_M_contig118764:102..5311622815706.671658-CDS-M-pyrifera_M_contig118764:102..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118764 103..531 -
1692277531.3210855-CDS-M-pyrifera_M_contig118764:102..5311692277531.3210855-CDS-M-pyrifera_M_contig118764:102..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118764 103..531 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.6847138-UTR-M-pyrifera_M_contig118764:531..5461622815706.6847138-UTR-M-pyrifera_M_contig118764:531..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118764 532..546 -
1692277531.3311684-UTR-M-pyrifera_M_contig118764:531..5461692277531.3311684-UTR-M-pyrifera_M_contig118764:531..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118764 532..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118764.3862.1prot_M-pyrifera_M_contig118764.3862.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118764 103..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118764.3862.1

>prot_M-pyrifera_M_contig118764.3862.1 ID=prot_M-pyrifera_M_contig118764.3862.1|Name=mRNA_M-pyrifera_M_contig118764.3862.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MNYSTFAEMAGVLLSYHIPLSDSLVLAAECTGNSKMINQFRSVAEKLEQG
EGIEGSIQSAAELPGYIQSMLMNPAHQNRLPDIMSEIARVYQTRVLNRIE
WIKNIVPVGLVVLVAGGITVCYALLVFLPFVEILKMLGSPSV*
back to top

mRNA from alignment at M-pyrifera_M_contig118764:103..546-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118764.3862.1 ID=mRNA_M-pyrifera_M_contig118764.3862.1|Name=mRNA_M-pyrifera_M_contig118764.3862.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig118764:103..546- (Macrocystis pyrifera P11B4 male)
AGGTTGGTGCTCGATATGAACTATTCCACTTTTGCGGAAATGGCCGGTGT TTTGCTTTCATATCATATTCCTTTATCTGATTCACTCGTACTCGCAGCAG AGTGTACGGGCAATTCGAAAATGATCAATCAATTCCGTTCAGTGGCGGAA AAACTTGAACAGGGGGAGGGAATTGAAGGCAGTATTCAGTCTGCAGCAGA ATTACCTGGATATATTCAATCCATGTTGATGAATCCCGCACATCAAAATC GCCTGCCGGACATCATGTCCGAAATTGCCCGTGTTTATCAGACGCGCGTA TTAAACCGTATTGAATGGATCAAAAACATCGTCCCTGTGGGATTAGTCGT ATTAGTCGCAGGCGGTATTACAGTCTGTTATGCACTGCTCGTTTTTTTAC CCTTCGTCGAGATTTTAAAAATGCTGGGAAGTCCTTCGGTCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118764:103..546-

>mRNA_M-pyrifera_M_contig118764.3862.1 ID=mRNA_M-pyrifera_M_contig118764.3862.1|Name=mRNA_M-pyrifera_M_contig118764.3862.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig118764:103..546- (Macrocystis pyrifera P11B4 male)
ATGAACTATTCCACTTTTGCGGAAATGGCCGGTGTTTTGCTTTCATATCA
TATTCCTTTATCTGATTCACTCGTACTCGCAGCAGAGTGTACGGGCAATT
CGAAAATGATCAATCAATTCCGTTCAGTGGCGGAAAAACTTGAACAGGGG
GAGGGAATTGAAGGCAGTATTCAGTCTGCAGCAGAATTACCTGGATATAT
TCAATCCATGTTGATGAATCCCGCACATCAAAATCGCCTGCCGGACATCA
TGTCCGAAATTGCCCGTGTTTATCAGACGCGCGTATTAAACCGTATTGAA
TGGATCAAAAACATCGTCCCTGTGGGATTAGTCGTATTAGTCGCAGGCGG
TATTACAGTCTGTTATGCACTGCTCGTTTTTTTACCCTTCGTCGAGATTT
TAAAAATGCTGGGAAGTCCTTCGGTCTAAATGAACTATTCCACTTTTGCG
GAAATGGCCGGTGTTTTGCTTTCATATCATATTCCTTTATCTGATTCACT
CGTACTCGCAGCAGAGTGTACGGGCAATTCGAAAATGATCAATCAATTCC
GTTCAGTGGCGGAAAAACTTGAACAGGGGGAGGGAATTGAAGGCAGTATT
CAGTCTGCAGCAGAATTACCTGGATATATTCAATCCATGTTGATGAATCC
CGCACATCAAAATCGCCTGCCGGACATCATGTCCGAAATTGCCCGTGTTT
ATCAGACGCGCGTATTAAACCGTATTGAATGGATCAAAAACATCGTCCCT
GTGGGATTAGTCGTATTAGTCGCAGGCGGTATTACAGTCTGTTATGCACT
GCTCGTTTTTTTACCCTTCGTCGAGATTTTAAAAATGCTGGGAAGTCCTT
CGGTCTAA
back to top