mRNA_M-pyrifera_M_contig118750.3859.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118750.3859.1
Unique NamemRNA_M-pyrifera_M_contig118750.3859.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118750.3859.1 vs. uniprot
Match: A0A7X6APZ2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6APZ2_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 9.900e-11
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    7 GKAIEATYRLDEVVEPTRIVFTVDGKVTGRDVIDIAAREGGATVRLDLEVKMKGAARLLDRGLQLAFAGIGDN 225
            G   +  Y L +    TR+ F +DGKV GR+   +     G  + + LE+ ++G AR+LDRGLQLA +GIG+N
Sbjct:   47 GAXXQVEYALVDSEPGTRLEFAIDGKVRGRETFVLTPTGSGTRIEMVLEIGLRGPARVLDRGLQLAVSGIGEN 119
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118750.3859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X6APZ2_9ACTN9.900e-1141.10Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118750contigM-pyrifera_M_contig118750:48..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.5392962-CDS-M-pyrifera_M_contig118750:47..3021622815706.5392962-CDS-M-pyrifera_M_contig118750:47..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118750 48..302 +
1692277531.274916-CDS-M-pyrifera_M_contig118750:47..3021692277531.274916-CDS-M-pyrifera_M_contig118750:47..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118750 48..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118750.3859.1prot_M-pyrifera_M_contig118750.3859.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118750 48..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118750.3859.1

>prot_M-pyrifera_M_contig118750.3859.1 ID=prot_M-pyrifera_M_contig118750.3859.1|Name=mRNA_M-pyrifera_M_contig118750.3859.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
FYGKAIEATYRLDEVVEPTRIVFTVDGKVTGRDVIDIAAREGGATVRLDL
EVKMKGAARLLDRGLQLAFAGIGDNIVAELERRF*
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mRNA from alignment at M-pyrifera_M_contig118750:48..302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118750.3859.1 ID=mRNA_M-pyrifera_M_contig118750.3859.1|Name=mRNA_M-pyrifera_M_contig118750.3859.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig118750:48..302+ (Macrocystis pyrifera P11B4 male)
TTCTACGGGAAGGCCATCGAGGCGACCTATCGCCTCGATGAAGTCGTGGA
ACCGACCCGGATCGTGTTCACCGTCGACGGCAAGGTGACGGGACGCGACG
TGATCGACATCGCCGCACGCGAGGGCGGCGCGACCGTGCGCCTCGACCTC
GAGGTGAAGATGAAGGGCGCGGCGCGCCTGCTCGACCGGGGCCTGCAGCT
CGCGTTCGCCGGGATCGGCGACAACATCGTCGCCGAGTTGGAGCGCCGCT
TCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118750:48..302+

>mRNA_M-pyrifera_M_contig118750.3859.1 ID=mRNA_M-pyrifera_M_contig118750.3859.1|Name=mRNA_M-pyrifera_M_contig118750.3859.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig118750:48..302+ (Macrocystis pyrifera P11B4 male)
TTCTACGGGAAGGCCATCGAGGCGACCTATCGCCTCGATGAAGTCGTGGA
ACCGACCCGGATCGTGTTCACCGTCGACGGCAAGGTGACGGGACGCGACG
TGATCGACATCGCCGCACGCGAGGGCGGCGCGACCGTGCGCCTCGACCTC
GAGGTGAAGATGAAGGGCGCGGCGCGCCTGCTCGACCGGGGCCTGCAGCT
CGCGTTCGCCGGGATCGGCGACAACATCGTCGCCGAGTTGGAGCGCCGCT
TCTAGTTCTACGGGAAGGCCATCGAGGCGACCTATCGCCTCGATGAAGTC
GTGGAACCGACCCGGATCGTGTTCACCGTCGACGGCAAGGTGACGGGACG
CGACGTGATCGACATCGCCGCACGCGAGGGCGGCGCGACCGTGCGCCTCG
ACCTCGAGGTGAAGATGAAGGGCGCGGCGCGCCTGCTCGACCGGGGCCTG
CAGCTCGCGTTCGCCGGGATCGGCGACAACATCGTCGCCGAGTTGGAGCG
CCGCTTCTAG
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