mRNA_M-pyrifera_M_contig118706.3850.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118706.3850.1
Unique NamemRNA_M-pyrifera_M_contig118706.3850.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: U6CTD5_NEOVI (Bis(5'-adenosyl)-triphosphatase n=8 Tax=Carnivora TaxID=33554 RepID=U6CTD5_NEOVI)

HSP 1 Score: 140 bits (353), Expect = 7.820e-41
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR 288
            +A VN KP+VPGH LV PLRRV RF++L  +EVADL+Q  QRV + +E+HF+ TS+TF +QDGPEAGQTV HVHVHVLPRK GDF+ ND IYDE++
Sbjct:   23 FALVNRKPVVPGHVLVCPLRRVERFRDLRPDEVADLFQATQRVGMVVEKHFQGTSLTFSIQDGPEAGQTVKHVHVHVLPRKAGDFQRNDSIYDELQ 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: A0A455AF23_PHYMC (Bis(5'-adenosyl)-triphosphatase n=17 Tax=Cetacea TaxID=9721 RepID=A0A455AF23_PHYMC)

HSP 1 Score: 140 bits (352), Expect = 2.140e-40
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR 288
            +A VN KP+VPGH LV PLR V RF++L   EVADL+Q AQRV  A+E+HF+ TS+TF VQDGPEAGQTV HVH+HVLPRK GDF+ ND IYDE++
Sbjct:   45 FALVNRKPVVPGHVLVCPLRPVERFRDLRPNEVADLFQAAQRVGTAVEKHFQGTSLTFSVQDGPEAGQTVKHVHIHVLPRKAGDFRRNDSIYDELQ 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: L8ISG6_9CETA (Bis(5'-adenosyl)-triphosphatase (Fragment) n=3 Tax=Bovinae TaxID=27592 RepID=L8ISG6_9CETA)

HSP 1 Score: 137 bits (346), Expect = 3.440e-40
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEV 285
            +A VN KP+VPGH LV PLR V RF+++S EEVADL+Q AQRV   +E+HF+ TS+TF +QDGPEAGQTV HVHVH+LPRK GDF  ND IYD V
Sbjct:   23 FALVNRKPVVPGHVLVCPLRPVERFRDMSPEEVADLFQAAQRVGTVVEKHFQGTSLTFSMQDGPEAGQTVKHVHVHILPRKAGDFHRNDSIYDAV 117
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: A0A8I5ZQ19_RAT (Bis(5'-adenosyl)-triphosphatase n=7 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I5ZQ19_RAT)

HSP 1 Score: 138 bits (347), Expect = 6.590e-40
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR 288
            +A VN KP+VPGH LV PLR V RF++L  +EVADL+Q  QRV   +E+HF+ TS+TF +QDGPEAGQTV HVHVH+LPRK GDF+ ND+IYDE++
Sbjct:   23 FALVNRKPVVPGHVLVCPLRPVERFRDLRPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHILPRKSGDFRRNDNIYDELQ 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: UPI001D130490 (bis(5'-adenosyl)-triphosphatase isoform X8 n=1 Tax=Bubalus bubalis TaxID=89462 RepID=UPI001D130490)

HSP 1 Score: 137 bits (345), Expect = 7.700e-40
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR 288
            +A VN KP+VPGH LV PLR V RF+++S EEVADL+Q AQRV   +E+HF+ TS+TF +QDGPEAGQTV HVHVH+LPRK GDF  ND IYD  R
Sbjct:   23 FALVNRKPVVPGHVLVCPLRPVERFRDMSPEEVADLFQAAQRVGTVVEKHFQGTSLTFSMQDGPEAGQTVKHVHVHILPRKAGDFHRNDSIYDAER 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: UPI00109FB9DB (bis(5'-adenosyl)-triphosphatase n=1 Tax=Grammomys surdaster TaxID=491861 RepID=UPI00109FB9DB)

HSP 1 Score: 136 bits (343), Expect = 1.020e-39
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDE 282
            +A VN KP+VPGH LV PLR V RF++L  +EVADL+Q  QRV   +E+HF+ TS+TF +QDGPEAGQTV HVHVH+LPRK GDF+ ND+IYDE
Sbjct:   23 FALVNRKPVVPGHVLVCPLRPVERFRDLHPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHILPRKAGDFRRNDNIYDE 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: A0A2P6VHL1_9CHLO (Bis(5-adenosyl)-triphosphatase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHL1_9CHLO)

HSP 1 Score: 138 bits (347), Expect = 1.130e-39
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEV 285
            +A VNLKP+VPGH LV P R V RF ELS EEV+DLW  AQRV  ALE HF A+S+T  +QDGP+AGQTVPHVHVH+LPRK GDF+ ND++YD +
Sbjct:   32 FAFVNLKPVVPGHVLVSPKRVVARFAELSPEEVSDLWCLAQRVGSALEPHFGASSLTLAIQDGPQAGQTVPHVHVHILPRKAGDFENNDEVYDAI 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: UPI001B351E00 (bis(5'-adenosyl)-triphosphatase n=2 Tax=Ochotona TaxID=9977 RepID=UPI001B351E00)

HSP 1 Score: 137 bits (345), Expect = 1.250e-39
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR 288
            +A VN KP+VPGH LV PLR V RF++L  +EVADL+Q +Q+V   +E+HF+ TS+T C+QDGPEAGQTV HVHVH+LPRK GDF+ ND IYDE++
Sbjct:   23 FALVNRKPVVPGHVLVCPLRPVERFRDLRPDEVADLFQASQKVGTVVEKHFQGTSLTVCIQDGPEAGQTVRHVHVHILPRKAGDFRRNDSIYDELQ 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: G1MFH2_AILME (Bis(5'-adenosyl)-triphosphatase n=4 Tax=Ursidae TaxID=9632 RepID=G1MFH2_AILME)

HSP 1 Score: 137 bits (345), Expect = 1.290e-39
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR 288
            +A VN KP+VPGH LV PLR V RF++L  EEVADL+Q  QRV + +E+HF+ TS+TF +QDGPEAGQTV HVHVHVLPRK GDF  ND IYDE++
Sbjct:   23 FALVNRKPVVPGHVLVCPLRPVERFRDLRPEEVADLFQATQRVGMVVEKHFQGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYDELQ 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Match: A0A6J0D426_PERMB (Bis(5'-adenosyl)-triphosphatase n=2 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A6J0D426_PERMB)

HSP 1 Score: 137 bits (346), Expect = 1.510e-39
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQHFEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR 288
            +A VN KP+VPGH LV PLR V RF++L  +EVADL+Q  QRV   +E+HF+ TS+TF +QDGPEAGQTV HVHVH+LPRK GDF+ ND+IYDE++
Sbjct:   39 FALVNRKPVVPGHVLVCPLRPVERFRDLRPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHILPRKAGDFRRNDNIYDELQ 134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118706.3850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U6CTD5_NEOVI7.820e-4166.67Bis(5'-adenosyl)-triphosphatase n=8 Tax=Carnivora ... [more]
A0A455AF23_PHYMC2.140e-4067.71Bis(5'-adenosyl)-triphosphatase n=17 Tax=Cetacea T... [more]
L8ISG6_9CETA3.440e-4067.37Bis(5'-adenosyl)-triphosphatase (Fragment) n=3 Tax... [more]
A0A8I5ZQ19_RAT6.590e-4064.58Bis(5'-adenosyl)-triphosphatase n=7 Tax=Rattus nor... [more]
UPI001D1304907.700e-4066.67bis(5'-adenosyl)-triphosphatase isoform X8 n=1 Tax... [more]
UPI00109FB9DB1.020e-3965.96bis(5'-adenosyl)-triphosphatase n=1 Tax=Grammomys ... [more]
A0A2P6VHL1_9CHLO1.130e-3967.37Bis(5-adenosyl)-triphosphatase n=1 Tax=Micractiniu... [more]
UPI001B351E001.250e-3963.54bis(5'-adenosyl)-triphosphatase n=2 Tax=Ochotona T... [more]
G1MFH2_AILME1.290e-3966.67Bis(5'-adenosyl)-triphosphatase n=4 Tax=Ursidae Ta... [more]
A0A6J0D426_PERMB1.510e-3964.58Bis(5'-adenosyl)-triphosphatase n=2 Tax=Peromyscus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118706contigM-pyrifera_M_contig118706:3..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score142.1
Seed ortholog evalue1.3e-31
Seed eggNOG ortholog28737.XP_006886406.1
Preferred nameFHIT
KEGG rclassRC00002
KEGG koko:K01522
KEGG ReactionR00187
KEGG Pathwayko00230,ko05222,ko05223,map00230,map05222,map05223
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003674,GO:0003824,GO:0004551,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009059,GO:0009117,GO:0009166,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010605,GO:0012501,GO:0015959,GO:0015961,GO:0015962,GO:0015964,GO:0016020,GO:0016151,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019899,GO:0023052,GO:0030162,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035556,GO:0042176,GO:0042177,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045861,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0047710,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0055086,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0071704,GO:0071944,GO:0072331,GO:0072332,GO:0072521,GO:0080090,GO:0090304,GO:0097190,GO:0097193,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901575,GO:1901576,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:2000058,GO:2000059
EggNOG free text desc.HIT domain
EggNOG OGs3533Y@311790,3A1SB@33154,3BQP9@33208,3D6TK@33213,3J1YK@40674,4888G@7711,498NV@7742,COG0537@1,KOG3379@2759
EC3.6.1.29
COG Functional cat.F
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size288
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118706.3850.1prot_M-pyrifera_M_contig118706.3850.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118706 3..420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.953076-CDS-M-pyrifera_M_contig118706:2..731622815705.953076-CDS-M-pyrifera_M_contig118706:2..73Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118706 3..73 +
1692277531.0019903-CDS-M-pyrifera_M_contig118706:2..731692277531.0019903-CDS-M-pyrifera_M_contig118706:2..73Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118706 3..73 +
1622815705.9664817-CDS-M-pyrifera_M_contig118706:150..3011622815705.9664817-CDS-M-pyrifera_M_contig118706:150..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118706 151..301 +
1692277531.0146909-CDS-M-pyrifera_M_contig118706:150..3011692277531.0146909-CDS-M-pyrifera_M_contig118706:150..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118706 151..301 +
1622815705.9772196-CDS-M-pyrifera_M_contig118706:354..4201622815705.9772196-CDS-M-pyrifera_M_contig118706:354..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118706 355..420 +
1692277531.0239942-CDS-M-pyrifera_M_contig118706:354..4201692277531.0239942-CDS-M-pyrifera_M_contig118706:354..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118706 355..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118706.3850.1

>prot_M-pyrifera_M_contig118706.3850.1 ID=prot_M-pyrifera_M_contig118706.3850.1|Name=mRNA_M-pyrifera_M_contig118706.3850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
YASVNLKPIVPGHSLVLPLRRVMRFKELSSEEVADLWQTAQRVSVALEQH
FEATSVTFCVQDGPEAGQTVPHVHVHVLPRKEGDFKWNDDIYDEVR
back to top

mRNA from alignment at M-pyrifera_M_contig118706:3..420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118706.3850.1 ID=mRNA_M-pyrifera_M_contig118706.3850.1|Name=mRNA_M-pyrifera_M_contig118706.3850.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=418bp|location=Sequence derived from alignment at M-pyrifera_M_contig118706:3..420+ (Macrocystis pyrifera P11B4 male)
TATGCGTCTGTGAATCTGAAGCCGATAGTGCCCGGCCACAGCCTGGTGCT
CCCTCTTCGCAGGGTGATGCGGTACGTGTCAAAGGAGCACTCTCAGATGG
CTATGTTGCTGCAGTAGACGTAAAGAGAGGAGTCTGACCCGGTCGCAGAT
TCAAGGAGCTCTCGAGCGAGGAGGTGGCCGACTTGTGGCAGACAGCCCAG
AGAGTGTCAGTCGCGCTCGAGCAGCACTTTGAAGCGACGTCAGTGACTTT
TTGCGTGCAAGACGGCCCGGAAGCAGGCCAAACAGTACCGCATGTACATG
TGCGCTTTCCTCCTTCCTGCCCGCAAGGCGCAACATTCGCTGACCGCTCC
AGGTCCATGTGCTGCCCCGCAAGGAAGGCGATTTCAAGTGGAACGATGAC
ATCTACGATGAGGTGAGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118706:3..420+

>mRNA_M-pyrifera_M_contig118706.3850.1 ID=mRNA_M-pyrifera_M_contig118706.3850.1|Name=mRNA_M-pyrifera_M_contig118706.3850.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig118706:3..420+ (Macrocystis pyrifera P11B4 male)
TATGCGTCTGTGAATCTGAAGCCGATAGTGCCCGGCCACAGCCTGGTGCT
CCCTCTTCGCAGGGTGATGCGTATGCGTCTGTGAATCTGAAGCCGATAGT
GCCCGGCCACAGCCTGGTGCTCCCTCTTCGCAGGGTGATGCGATTCAAGG
AGCTCTCGAGCGAGGAGGTGGCCGACTTGTGGCAGACAGCCCAGAGAGTG
TCAGTCGCGCTCGAGCAGCACTTTGAAGCGACGTCAGTGACTTTTTGCGT
GCAAGACGGCCCGGAAGCAGGCCAAACAGTACCGCATGTACATATTCAAG
GAGCTCTCGAGCGAGGAGGTGGCCGACTTGTGGCAGACAGCCCAGAGAGT
GTCAGTCGCGCTCGAGCAGCACTTTGAAGCGACGTCAGTGACTTTTTGCG
TGCAAGACGGCCCGGAAGCAGGCCAAACAGTACCGCATGTACATGTCCAT
GTGCTGCCCCGCAAGGAAGGCGATTTCAAGTGGAACGATGACATCTACGA
TGAGGTGAGAGTCCATGTGCTGCCCCGCAAGGAAGGCGATTTCAAGTGGA
ACGATGACATCTACGATGAGGTGAGA
back to top