mRNA_M-pyrifera_M_contig118685.3845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118685.3845.1
Unique NamemRNA_M-pyrifera_M_contig118685.3845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: UPI000C6CADC6 (telomerase Cajal body protein 1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6CADC6)

HSP 1 Score: 91.7 bits (226), Expect = 1.780e-19
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGRGRVRL-LRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++CFA S+S+   LFAAGS+ R++G+YS +    L L   +MGGV  L FS++G+ L++  RK   ILCWD+RN  K  YS  R   TNQR+ F +    Q+L+SG
Sbjct:  253 GIISCFAFSSSSN-HLFAAGSYCRTIGIYSAQELDLLFLLSGQMGGVTHLIFSSDGIKLFSGGRKDCEILCWDIRNPGKVFYSMRRIVTTNQRMYFDIDSTGQYLISG 359
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: A0A2B4RQF2_STYPI (Telomerase Cajal body protein 1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQF2_STYPI)

HSP 1 Score: 86.7 bits (213), Expect = 1.310e-17
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGR-GRVRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A S    G ++A GS+ +SVG+YS   G +  L   + GGV  + FS +G  LY+  RK + ILCWD+RN  K +YS  R   TNQR+ F +  + Q+++SG
Sbjct:  351 GIISCIAFSPDNSG-VYALGSYSKSVGVYSDTDGELIFLLQGQQGGVTHVMFSPDGTKLYSGGRKDNEILCWDVRNPGKVLYSMMRSVDTNQRVYFDIDRSGQYIISG 457
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: UPI00155F704E (LOW QUALITY PROTEIN: telomerase Cajal body protein 1 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI00155F704E)

HSP 1 Score: 85.5 bits (210), Expect = 3.400e-17
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYS-GRGRVRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A S +    L+A GS+ R+VGLYS   G    +     GG+  L FS +G  LY+  RK   ILCWDLR   + ++S  R   TNQR+ F + P+ Q+LLSG
Sbjct:  420 GIISCIAFSPAQD--LYACGSYSRTVGLYSRAEGLPIAVLQGHQGGLTHLRFSPDGTLLYSGGRKDPEILCWDLREPGRVLFSMRRAVSTNQRMYFDLEPSGQYLLSG 525
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: UPI001C0A5E87 (telomerase Cajal body protein 1 isoform X1 n=2 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C0A5E87)

HSP 1 Score: 85.1 bits (209), Expect = 4.630e-17
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGRGR--VRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GIV+C A S      L+A GS+ R+VG+YS      + LL     GG+  L F+ +G  LY  +RK   ILCWDLRN  + ++S  R  +TNQRI F + P  ++LLSG
Sbjct:  382 GIVSCMAFSPCQS--LYACGSYSRTVGVYSCEDGELLALLPPRHQGGITHLLFAPDGHHLYTGARKDKEILCWDLRNPGRVLFSIHRSVNTNQRIYFDLDPTGRYLLSG 488
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: A0A674EEL3_SALTR (Telomerase Cajal body protein 1-like n=2 Tax=Salmoninae TaxID=504568 RepID=A0A674EEL3_SALTR)

HSP 1 Score: 84.7 bits (208), Expect = 5.960e-17
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGR--GRVRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A S      ++A GS+ R+ GLYS +   ++ LL     GG+  L FS +G +LY   RK   ILCWDLR+  K ++S  R   TNQRI F + P+ ++LLSG
Sbjct:  282 GIISCMAFSPCQS--VYACGSYSRTAGLYSCQDGSQLALLPPRHHGGITHLAFSPDGHYLYTGGRKDPEILCWDLRDPGKILFSLKRNVATNQRIYFDLDPSGRYLLSG 388
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: W5K705_ASTMX (WD repeat containing antisense to TP53 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K705_ASTMX)

HSP 1 Score: 84.7 bits (208), Expect = 6.170e-17
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGR--GRVRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A S S    ++A GS+ R+VGLYS      + LL     GGV  L FS +G  LY   RK   ILCWDLR+  + ++S  R   TNQRI F + P+ ++L+SG
Sbjct:  326 GIISCLAFSPSQP--VYACGSYSRTVGLYSCEDGSLLALLPQRHNGGVTHLLFSPDGYHLYTGGRKDPEILCWDLRDPGRVLFSLPRTVSTNQRIYFDLDPSGRYLMSG 432
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: A0A6P3W0N7_CLUHA (telomerase Cajal body protein 1 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W0N7_CLUHA)

HSP 1 Score: 84.7 bits (208), Expect = 6.250e-17
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGRGR--VRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A S      L+A GS+ RSVG+Y+ +    + LL     GG+  L F+ NG  LY   RK   ILCWDLR+  + ++S  R  +TNQRI F + P+ ++LLSG
Sbjct:  348 GIISCMAFSPCKS--LYACGSYSRSVGVYACQDGELLALLPSRHRGGITHLLFAPNGHHLYTGGRKDKEILCWDLRDPGRVLFSVNRSVNTNQRIYFDLDPSGRYLLSG 454
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: A0A443SU65_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SU65_9ACAR)

HSP 1 Score: 84.0 bits (206), Expect = 6.390e-17
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGRGRVRL-LRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A++      L+AAGS+G+ VG+Y       + + + + GG+  L FS +G  LY+  RK   ILCWDLRN    M++  R   TNQRI F VSP   FL+SG
Sbjct:  151 GIISCIATTPQKPS-LYAAGSYGKHVGIYDENSEEEICVLEGQNGGITHLMFSVDGNMLYSGGRKDDEILCWDLRNYGDVMFAMQRSVTTNQRIYFDVSPDGCFLVSG 257
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: A0A3B4C879_PYGNA (WD repeat containing antisense to TP53 n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4C879_PYGNA)

HSP 1 Score: 84.0 bits (206), Expect = 1.150e-16
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGR--GRVRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A S S    ++  GS+ R+VGLYS      + LL     GGV  L FS +G  LY   RK   ILCWDLR+  + ++S  R  +TNQRI F + P+ ++L+SG
Sbjct:  333 GIISCLAFSPSQA--VYVCGSYSRTVGLYSCEDGSLLALLPQRHHGGVTHLLFSPDGYHLYTGGRKDPEILCWDLRDPGRVLFSLPRTINTNQRIYFDLDPSGRYLVSG 439
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BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Match: A0A2D0RD99_ICTPU (telomerase Cajal body protein 1 n=3 Tax=Ictaluridae TaxID=7996 RepID=A0A2D0RD99_ICTPU)

HSP 1 Score: 83.6 bits (205), Expect = 1.560e-16
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    1 GIVNCFASSASAGGWLFAAGSFGRSVGLYSGR--GRVRLLRDERMGGVNQLHFSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPAEQFLLSG 321
            GI++C A S+S    ++A GS+ R+VGLYS        LL     GGV  L FS +G  LY   RK   ILCWDLR+  + ++S  R   TNQRI F + P+ ++L+SG
Sbjct:  320 GIISCMAFSSSQP--VYACGSYSRTVGLYSCEDGSMFALLPQRHHGGVTHLLFSPDGNHLYTGGRKDPEILCWDLRDPGRVLFSLPRNVSTNQRIYFDLDPSGRYLVSG 426
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118685.3845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C6CADC61.780e-1946.30telomerase Cajal body protein 1-like n=1 Tax=Centr... [more]
A0A2B4RQF2_STYPI1.310e-1741.67Telomerase Cajal body protein 1 n=2 Tax=Stylophora... [more]
UPI00155F704E3.400e-1742.59LOW QUALITY PROTEIN: telomerase Cajal body protein... [more]
UPI001C0A5E874.630e-1743.12telomerase Cajal body protein 1 isoform X1 n=2 Tax... [more]
A0A674EEL3_SALTR5.960e-1742.20Telomerase Cajal body protein 1-like n=2 Tax=Salmo... [more]
W5K705_ASTMX6.170e-1743.12WD repeat containing antisense to TP53 n=2 Tax=Ast... [more]
A0A6P3W0N7_CLUHA6.250e-1742.20telomerase Cajal body protein 1 n=1 Tax=Clupea har... [more]
A0A443SU65_9ACAR6.390e-1742.59Uncharacterized protein (Fragment) n=1 Tax=Leptotr... [more]
A0A3B4C879_PYGNA1.150e-1642.20WD repeat containing antisense to TP53 n=2 Tax=Ser... [more]
A0A2D0RD99_ICTPU1.560e-1643.12telomerase Cajal body protein 1 n=3 Tax=Ictalurida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118685contigM-pyrifera_M_contig118685:28..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.0
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog3055.EDP05920
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0006996,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0015030,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032202,GO:0032203,GO:0032991,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051972,GO:0051973,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.WD40 repeats
EggNOG OGs34JTR@3041,37RTG@33090,KOG2919@1,KOG2919@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.712367-CDS-M-pyrifera_M_contig118685:27..3481622815705.712367-CDS-M-pyrifera_M_contig118685:27..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118685 28..348 -
1692277530.9200616-CDS-M-pyrifera_M_contig118685:27..3481692277530.9200616-CDS-M-pyrifera_M_contig118685:27..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118685 28..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118685.3845.1prot_M-pyrifera_M_contig118685.3845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118685 28..348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118685.3845.1

>prot_M-pyrifera_M_contig118685.3845.1 ID=prot_M-pyrifera_M_contig118685.3845.1|Name=mRNA_M-pyrifera_M_contig118685.3845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
GIVNCFASSASAGGWLFAAGSFGRSVGLYSGRGRVRLLRDERMGGVNQLH
FSTNGLFLYAASRKSSHILCWDLRNDAKAMYSFARPAHTNQRISFSVSPA
EQFLLSG
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mRNA from alignment at M-pyrifera_M_contig118685:28..348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118685.3845.1 ID=mRNA_M-pyrifera_M_contig118685.3845.1|Name=mRNA_M-pyrifera_M_contig118685.3845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig118685:28..348- (Macrocystis pyrifera P11B4 male)
GGGATCGTGAACTGCTTCGCGAGCAGCGCCAGCGCGGGGGGGTGGCTCTT
CGCCGCCGGCTCCTTCGGCCGCTCCGTGGGCCTCTACAGCGGCAGAGGCA
GAGTCCGTCTCTTGCGCGACGAACGCATGGGGGGCGTGAACCAATTGCAC
TTCTCGACCAACGGTCTCTTTCTCTACGCAGCCTCGCGGAAATCCTCCCA
CATTCTCTGCTGGGATTTGCGTAACGACGCGAAGGCCATGTACAGTTTCG
CGCGCCCTGCCCACACCAATCAACGGATTTCCTTCTCCGTCAGCCCCGCG
GAGCAATTCCTCCTCTCCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118685:28..348-

>mRNA_M-pyrifera_M_contig118685.3845.1 ID=mRNA_M-pyrifera_M_contig118685.3845.1|Name=mRNA_M-pyrifera_M_contig118685.3845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig118685:28..348- (Macrocystis pyrifera P11B4 male)
GGGATCGTGAACTGCTTCGCGAGCAGCGCCAGCGCGGGGGGGTGGCTCTT
CGCCGCCGGCTCCTTCGGCCGCTCCGTGGGCCTCTACAGCGGCAGAGGCA
GAGTCCGTCTCTTGCGCGACGAACGCATGGGGGGCGTGAACCAATTGCAC
TTCTCGACCAACGGTCTCTTTCTCTACGCAGCCTCGCGGAAATCCTCCCA
CATTCTCTGCTGGGATTTGCGTAACGACGCGAAGGCCATGTACAGTTTCG
CGCGCCCTGCCCACACCAATCAACGGATTTCCTTCTCCGTCAGCCCCGCG
GAGCAATTCCTCCTCTCCGGGGGGATCGTGAACTGCTTCGCGAGCAGCGC
CAGCGCGGGGGGGTGGCTCTTCGCCGCCGGCTCCTTCGGCCGCTCCGTGG
GCCTCTACAGCGGCAGAGGCAGAGTCCGTCTCTTGCGCGACGAACGCATG
GGGGGCGTGAACCAATTGCACTTCTCGACCAACGGTCTCTTTCTCTACGC
AGCCTCGCGGAAATCCTCCCACATTCTCTGCTGGGATTTGCGTAACGACG
CGAAGGCCATGTACAGTTTCGCGCGCCCTGCCCACACCAATCAACGGATT
TCCTTCTCCGTCAGCCCCGCGGAGCAATTCCTCCTCTCCGGG
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